Paenibacillus brasilensis strain KACC 13842 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Complete genome of Paenibacillus brasilensis KACC 13842
Submitted (17-OCT-2019) College of Agriculture and Life Sciences, Kyungpook National University, Daehak-ro, Daegu 41566, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP045297.1.\nBacteria and source DNA available from Shin's Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 27-SEP-2019\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 137.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:55:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,395\nCDSs (total) :: 5,265\nGenes (coding) :: 5,011\nCDSs (with protein) :: 5,011\nGenes (RNA) :: 130\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 92\nncRNAs :: 4\nPseudo Genes (total) :: 254\nCDSs (without protein) :: 254\nPseudo Genes (ambiguous residues) :: 0 of 254\nPseudo Genes (frameshifted) :: 141 of 254\nPseudo Genes (incomplete) :: 132 of 254\nPseudo Genes (internal stop) :: 51 of 254\nPseudo Genes (multiple problems) :: 62 of 254\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010349931.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017815231.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349929.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349928.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010349926.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349925.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349924.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349923.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349922.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349920.1
COORDINATES: similar to AA sequence:RefSeq:WP_010347028.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014280169.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010349916.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349915.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010349914.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349912.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349911.1
COORDINATES: similar to AA sequence:RefSeq:WP_014279295.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_017425659.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008787624.1
COORDINATES: similar to AA sequence:RefSeq:WP_013371208.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010349910.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349908.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349907.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010349906.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349905.1
COORDINATES: similar to AA sequence:RefSeq:WP_020621166.1
COORDINATES: similar to AA sequence:RefSeq:WP_010349902.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010349901.1
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_010349898.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_010349897.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009676115.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]