Corynebacterium casei LMG S-19264 plasmid pCASE2, complete sequence.
type: Entry
definition: Corynebacterium casei LMG S-19264 plasmid pCASE2, complete sequence.
sequence version: NZ_CP004352.1
sequence date: 2023-07-16
sequence: sequence
division: CON
label: NZ_CP004352.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03081454
keyword: RefSeq
source: Corynebacterium casei LMG S-19264
organism: Corynebacterium casei LMG S-19264
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP004352.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 203.59\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/16/2023 10:30:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,875\nCDSs (total) :: 2,810\nGenes (coding) :: 2,741\nCDSs (with protein) :: 2,741\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 26 of 69\nPseudo Genes (incomplete) :: 43 of 69\nPseudo Genes (internal stop) :: 8 of 69\nPseudo Genes (multiple problems) :: 8 of 69\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16264
topology: circular
so has quality: SO_0000988
location: 1..16264
location: region:1-16264:1
RO_0002162: 1285583

NZ_CP004352
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03081454
type: BioSample
SIO_000068: biosample

1
title: The complete genome sequence of Corynebacterium casei LMG S-19264 (=DSM 44701)
author: Ruckert, C.
author: Albersmeier, A.
author: Kalinowski, J.
journal: Unpublished

2
title: Direct Submission
author: Ruckert, C.
author: Albersmeier, A.
author: Kalinowski, J.
journal: Submitted (23-FEB-2013) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16264:1
position: 16264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16264:1:source
so part of: sequence
organism: Corynebacterium casei LMG S-19264
mol type: genomic DNA
strain: LMG S-19264
culture collection: DSM:44701
type material: type strain of Corynebacterium casei
plasmid: pCASE2

1285583
type: Taxonomy
SIO_000068: taxonomy

CCASEI_RS14250
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14250
old locus tag: CCASEI_14293
so part of: sequence
location: complement(join(15298..16264,1..314))
location: region:1-16264:-1
so has part: feature:1-314:-1:exon
so has part: feature:15298-16264:-1:exon
subclass of: SO_0000010

82878932
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16264:-1
position: 16264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-314:-1:exon

position:314:-1
position: 314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15298-16264:-1:exon

position:15298:-1
position: 15298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCASEI_RS14250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14250
old locus tag: CCASEI_14293
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014301991.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MDKETGEKRSVPNLYRIDSDKLGRCEYVMLTSKQYASVMVIDVDQIGKAGGHPENLNSYVKGVIWALVQHGIGPAWAGINPISGKAQFIWLIDPVYAGKNHTSRNMELLKATSHELGELLDHDPHFAHRFSRSPFYTGKSPEAYRWYCQHDRVIRLQDFLRQVREMAGQSQHVKNKRQQFNSGRELINTVKTRREEAQAFKALADDVENEINAELDQYDPELIDGVRVRWISQGVTARDETAFSHALKIGHRLRKAGKRLTDAAIIDAYEHAYNVAQQQGSAGRDSEMPPMRDRQTMARRVRGYVTQSKTNTSLGSNAPGRATSSERKALATMGRKGGLKAAQRWKTDPDGEYAQGRREALAAANRRKKASGNSTRAQVLSVISQTYEQTGQIPTWQELMQEVGVSRRTVAYHVAALKKAGLYPDV
SIO_010081: CCASEI_RS14250
subclass of: SO_0000673
so part of: CCASEI_RS14250
location: complement(join(15298..16264,1..314))
location: region:1-16264:-1
so has part: feature:1-314:-1:exon
so has part: feature:15298-16264:-1:exon

WP_025388374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-314:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15298-16264:-1:exon

CCASEI_RS14175
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14175
old locus tag: CCASEI_14298
so part of: sequence
location: complement(797..1150)
location: region:797-1150:-1
so has part: feature:797-1150:-1:exon
subclass of: SO_0000010

82878920
type: Gene
SIO_000068: ncbigene

position:797:-1
position: 797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1150:-1
position: 1150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:797-1150:-1:exon

CCASEI_RS14175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14175
old locus tag: CCASEI_14298
function: 5.2 Protein of unknown function similar to proteins from other organisms
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRFDGSQRDYEMHIRNRARKLIDPVDTGHLTYGEAYAAALAISTQNDLRAEDPELTEAGAKAIGEVVADAIKRAESERAEAERTRNITGAVGKNYFRLINAAHENAIQQALDAVEE
SIO_010081: CCASEI_RS14175
subclass of: SO_0000673
so part of: CCASEI_RS14175
location: complement(797..1150)
location: region:797-1150:-1
so has part: feature:797-1150:-1:exon

WP_006822442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:797-1150:-1:exon

CCASEI_RS14865
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14865
so part of: sequence
location: 1397..1660
location: region:1397-1660:1
so has part: feature:1397-1660:1:exon
subclass of: SO_0000010

82879007
type: Gene
SIO_000068: ncbigene

position:1397:1
position: 1397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1660:1
position: 1660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1397-1660:1:exon

CCASEI_RS14865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14865
function: 5.2 Protein of unknown function similar to proteins from other organisms
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770530.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MTKQGVHPSGRVVSVRLDEETIERLDNLSERTGRSRGFYLKLAIRAMLPAIEQKHWEHAAAQFEEDVIDRRFREIMTQALGSDNDQK
SIO_010081: CCASEI_RS14865
subclass of: SO_0000673
so part of: CCASEI_RS14865
location: 1397..1660
location: region:1397-1660:1
so has part: feature:1397-1660:1:exon

WP_006822443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1397-1660:1:exon

CCASEI_RS14185
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14185
old locus tag: CCASEI_14308
so part of: sequence
location: 1780..2364
location: region:1780-2364:1
so has part: feature:1780-2364:1:exon
subclass of: SO_0000010

82878921
type: Gene
SIO_000068: ncbigene

position:1780:1
position: 1780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2364:1
position: 2364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1780-2364:1:exon

CCASEI_RS14185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14185
old locus tag: CCASEI_14308
function: 3.1 DNA replication
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006822444.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MILGIVNIKGGVGKTTTAIYLGSALAAEGKKVTLIDLDRQGTAMDWAESAQEAGTPLGFEVSIAIPRQLERITSSLADDEVVIIDTPPGDEPSINATLQVSDFIIIPAAPRGADVAQMWKVIDVLEQTPYAALLTQVRAGTTAISEAIDALKEADVSFFETVIPLREAFHRSFRTKPTDLGEYAQVLAEIKESF
SIO_010081: CCASEI_RS14185
subclass of: SO_0000673
so part of: CCASEI_RS14185
location: 1780..2364
location: region:1780-2364:1
so has part: feature:1780-2364:1:exon

WP_006822444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1780-2364:1:exon

CCASEI_RS14190
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14190
old locus tag: CCASEI_14313
so part of: sequence
location: 2364..2603
location: region:2364-2603:1
so has part: feature:2364-2603:1:exon
subclass of: SO_0000010

82878922
type: Gene
SIO_000068: ncbigene

position:2603:1
position: 2603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2364-2603:1:exon

CCASEI_RS14190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14190
old locus tag: CCASEI_14313
function: 5.2 Protein of unknown function similar to proteins from other organisms
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006822445.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVQKTNSMKRQPKSAARESADISKAFTSRNQSDHTVKLTVELDSRLHRELKAAAALQSVTMREIIHDAVEAELQKYKN
SIO_010081: CCASEI_RS14190
subclass of: SO_0000673
so part of: CCASEI_RS14190
location: 2364..2603
location: region:2364-2603:1
so has part: feature:2364-2603:1:exon

WP_006822445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2364-2603:1:exon

CCASEI_RS14195
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14195
old locus tag: CCASEI_14318
so part of: sequence
location: complement(2685..3305)
location: region:2685-3305:-1
so has part: feature:2685-3305:-1:exon
subclass of: SO_0000010

82878923
type: Gene
SIO_000068: ncbigene

position:2685:-1
position: 2685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3305:-1
position: 3305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2685-3305:-1:exon

CCASEI_RS14195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14195
old locus tag: CCASEI_14318
function: 3.1 DNA replication
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: division plane positioning ATPase MipZ
translation: MIISVANLKGGLMRSTNAALLAEAYSRMGKNVAIADTSWDGGAAHWLKLAHQNGNVSPIEVHKFPIDAMLQAHHIAELGDELRANIQQLEESLGDDAVVIVDTNARQEQKLRELDSIVDRVAVPFDGSSMSVEPTRRTLVAINAPTIMFGCGPRADEPMYQEMLNKVGVKATREASVAIGYSEDAQCCRIPDDMPDYEALASELIQ
SIO_010081: CCASEI_RS14195
subclass of: SO_0000673
so part of: CCASEI_RS14195
location: complement(2685..3305)
location: region:2685-3305:-1
so has part: feature:2685-3305:-1:exon

WP_006822446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2685-3305:-1:exon

CCASEI_RS14870
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14870
old locus tag: CCASEI_14323
so part of: sequence
location: 3392..3637
location: region:3392-3637:1
so has part: feature:3392-3637:1:exon
subclass of: SO_0000010

82879008
type: Gene
SIO_000068: ncbigene

position:3392:1
position: 3392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3637:1
position: 3637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3392-3637:1:exon

CCASEI_RS14870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14870
old locus tag: CCASEI_14323
function: 3.5.2 Transcription regulation
inference: COORDINATES: protein motif:HMM:NF024949.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MVEDQRLLQEVGNRVRSARKKKGLSQESLAHLSGLHRTYVSSIERGERNLSVLNLLTLATVLDVDAATIVASLKRAPKNNV
SIO_010081: CCASEI_RS14870
subclass of: SO_0000673
so part of: CCASEI_RS14870
location: 3392..3637
location: region:3392-3637:1
so has part: feature:3392-3637:1:exon

WP_006821242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3392-3637:1:exon

CCASEI_RS14205
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
gene: mobF
locus tag: CCASEI_RS14205
old locus tag: CCASEI_14328
so part of: sequence
location: complement(3792..7190)
location: region:3792-7190:-1
so has part: feature:3792-7190:-1:exon
subclass of: SO_0000010

82878924
type: Gene
SIO_000068: ncbigene

position:3792:-1
position: 3792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7190:-1
position: 7190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3792-7190:-1:exon

CCASEI_RS14205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
gene: mobF
locus tag: CCASEI_RS14205
old locus tag: CCASEI_14328
inference: COORDINATES: protein motif:HMM:NF041492.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MNAHSVAYYQSTVEENQGPDSYYSEDGTKPAEVWIKAAHATNSTFVSTHLGVENGETVDGKTVHDWFDNAVAPSGAKLGRAPGADGVPGFDLTFCAPKSVSLLWGLGDDPELRTLIDHAHQEAVSEALDYVSEHAGYTRRQDPTVSEKRLMIEKLRGISGVKYEHRTSRAGDPHVHSHVLLANKQLCQDGKIRTLDSKGIYHEARAAGMVYQATLREILSRKLGLEWGEIVNGCAEISGLDDRKVLADFSTRAREIDQWQENNGLETRSNYQRIAQKITRQTKDLDVSLDELETQWAQREHSETVRGFIASLDKNPGGDGAQIYHYGGKTLPDSADILAEVIAERSTFTRADVAEKVAELLPVGAVEPHLMLRTIESLTDAALTSDDSLSVTPDKDPAVDNTQREGAQRFTTTAVIDEVEQAVRLATAVVDAGVSAESIKPIPGALSENQASAMRQVVKSPYRASVIVAPAGAGKTSSLKAARSAWEHAGKTVVGLAPTGKAADVMVGEAVADESMTIARALRAGNASTPGQRVRALGWDRNTVVVVDEAGMVASPELVEILSTVKAAGARTVLVGDPEQYAAVKARSGLLATLSEELPDAVELTEVFRQRSEKEREASTWLRSGDEGLIERAAQWYADNNRVHAGSVTAMLDDALAGWAKDTEHGKQSLLIASTHEQVRALNAAAQKTRAQRKELDLQQPHTRLSDGLEAYIDDTILTRSNDYELVTSAGDVVRNGQRWMVESFTADGSAQVRRLDDTSATVTLSSDYLRDSAQLGYASTGHSAQGATVDIARVVSGVGQLDKASVYVPMTRGRDGNFLYITEEQPGDSETGHGKALPKQRREPKEYARELLTHAVQRDRGDATPHTLYGQARRDWALNRLLTGAVKDPFKGTAIAAYMKGFEQRRSNRFHAHFDMSPELLTEKSSSAQGGTREERIARRHTQFLDERAQAQQQRDKVAEQLTQEIGKLAMLKEQDRDLESRVWDAQRIYDKAERSLSWAQSTQQSRGLFKKLLHGASDQAKVDELTQELEQAQQAYEEISQQHDALASELEVQKDTVERLHERDGELDDRMRFLDSMLFLTENGTSPFAEDQLDSFSSSADSYLGYDDSYDMSSSPVLGLSDDSSDGMEL
SIO_010081: CCASEI_RS14205
subclass of: SO_0000673
so part of: CCASEI_RS14205
location: complement(3792..7190)
location: region:3792-7190:-1
so has part: feature:3792-7190:-1:exon

WP_169731196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3792-7190:-1:exon

CCASEI_RS15520
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS15520
pseudo: true
so part of: sequence
location: <7347..7562
location: region:7347-7562:1
so has part: feature:7347-7562:1:exon
subclass of: SO_0000010

82879096
type: Gene
SIO_000068: ncbigene

position:7347:1
position: 7347
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:7562:1
position: 7562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7347-7562:1:exon

CCASEI_RS15520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS15520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003897969.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: iron ABC transporter permease
SIO_010081: CCASEI_RS15520
subclass of: SO_0000673
so part of: CCASEI_RS15520
location: <7347..7562
location: region:7347-7562:1
so has part: feature:7347-7562:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7347-7562:1:exon

CCASEI_RS14215
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14215
old locus tag: CCASEI_14338
so part of: sequence
location: complement(7816..8529)
location: region:7816-8529:-1
so has part: feature:7816-8529:-1:exon
subclass of: SO_0000010

82878925
type: Gene
SIO_000068: ncbigene

position:7816:-1
position: 7816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8529:-1
position: 8529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7816-8529:-1:exon

CCASEI_RS14215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14215
old locus tag: CCASEI_14338
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019618883.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator
translation: MMLVRLTLLLVWRGRNRTWQDGVMIRSGRPRRLTTAAIVDAGTKLTLPKLTVRGIASELGVSEMSIYRRAGSIQGLRDLVAEGIVERADFALPNLDDPEDALVDLARRLRDFVLTNPGIAEHLTRLSSATPVSVGRIDRSQAEFAERYGISAAQASILVSTIAEHAVALAAVNPRSHSQVRDSTSLSAAVSTVRAGALATAALSPEERFCWSIRATARGMLGMLGLPIRTDTPLSGG
SIO_010081: CCASEI_RS14215
subclass of: SO_0000673
so part of: CCASEI_RS14215
location: complement(7816..8529)
location: region:7816-8529:-1
so has part: feature:7816-8529:-1:exon

WP_211475973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7816-8529:-1:exon

CCASEI_RS14220
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14220
old locus tag: CCASEI_14343
so part of: sequence
location: 8545..9435
location: region:8545-9435:1
so has part: feature:8545-9435:1:exon
subclass of: SO_0000010

82878926
type: Gene
SIO_000068: ncbigene

position:8545:1
position: 8545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9435:1
position: 9435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8545-9435:1:exon

CCASEI_RS14220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14220
old locus tag: CCASEI_14343
function: 1.2.3 Transport/binding of inorganic ions
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019618882.1
GO function: GO:0071949 - FAD binding [Evidence IEA]
GO process: GO:0055072 - obsolete iron ion homeostasis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: siderophore-interacting protein
translation: MTDSINLTQDELAGLLEVLKHPDHQQGLEDRYLTVTAIEHRARKLTRISATISGDDPLNEWTLANPTVRVALPEPPEEFAAIPGVPKTTTRVYTLVEIDPATRTAQIDLVVHAEASPAMRWLAQLRIGDRIDIVGPRPHRTPGEGTPRVLLADSSALPAATRLLRTMPHVDETFVFAAVPEDEFAILQQEISALAEPITAFRVEPHGQYPLATAFAEFDLTTDASVWAAGEREDMREIRHRCKHHLGLLSEQTQVFGYWKYGMTNTRLDFARLRATQKGLAAGRAFTDTDDFEIEL
SIO_010081: CCASEI_RS14220
subclass of: SO_0000673
so part of: CCASEI_RS14220
location: 8545..9435
location: region:8545-9435:1
so has part: feature:8545-9435:1:exon

WP_006821245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8545-9435:1:exon

CCASEI_RS14225
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14225
old locus tag: CCASEI_14348
so part of: sequence
location: 9432..10022
location: region:9432-10022:1
so has part: feature:9432-10022:1:exon
subclass of: SO_0000010

82878927
type: Gene
SIO_000068: ncbigene

position:9432:1
position: 9432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10022:1
position: 10022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9432-10022:1:exon

CCASEI_RS14225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14225
old locus tag: CCASEI_14348
function: 6 Protein of unknown function, without similarity to other proteins
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGETRITSLKSDRFSTRALLTFVVLGALGAIIVHVSRILGVALQATVPWLAFPAPVPWFLGILIAALLIQRSGAALLTSIVTTVAGFGALALCAGIVIELTFFITRRLRSQTQPTWPPARSQFWLWWAILACAIVSLMSFGFMFFYQEFLLLDPSIKLLALIIRVGLGVLYGWGAWVMTIGLLRANVNPQRIVVA
SIO_010081: CCASEI_RS14225
subclass of: SO_0000673
so part of: CCASEI_RS14225
location: 9432..10022
location: region:9432-10022:1
so has part: feature:9432-10022:1:exon

WP_006821246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9432-10022:1:exon

CCASEI_RS14230
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14230
old locus tag: CCASEI_14353
so part of: sequence
location: 10019..11479
location: region:10019-11479:1
so has part: feature:10019-11479:1:exon
subclass of: SO_0000010

82878928
type: Gene
SIO_000068: ncbigene

position:10019:1
position: 10019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11479:1
position: 11479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10019-11479:1:exon

CCASEI_RS14230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14230
old locus tag: CCASEI_14353
function: 1.2 Transport/binding proteins and lipoproteins
inference: COORDINATES: protein motif:HMM:NF014516.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSLPNSADPGRYNVRIQQFTIAYDGANPVLNIPYLELVSGSYTLITGPTGCGKSSLAHALVGVLEDMTTARVAGSISMNGTQLATLDSAQRSGTIAAVWQRPETQLFASTVLAEVRAGLDFQLIAPNEATFRARRALHLVGLSHIDESRNPLTLSGGEQQRLALASALVLRAPILVLDEVASQLDRTASHRLGKIIREIRSARQLTVVAFDHRPDPHLEHTDRVIVLDENGRIALDDKPASVYGENVDFCRRIGVHLPAKETSSSDTDFGALTVHQTAPGLTTQALTVARRSALLLRDATLTLPRGAIALLLGPNGAGKTSLLDALAGEKRGVRGHIDPSRRVRLTRGIGYLPQRGSELMFAHTVRTELHLALPPGARSSAAEIDDMLNRAGLLCLAEVHPQHLSGGQRQRLSVLLAVAGRPAFLLLDEPTNAQDVTGTAQIRALLAGNAQDRVAVIATHDAGSFRGIATHHIELQTGIVKGVWQI
SIO_010081: CCASEI_RS14230
subclass of: SO_0000673
so part of: CCASEI_RS14230
location: 10019..11479
location: region:10019-11479:1
so has part: feature:10019-11479:1:exon

WP_006821247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10019-11479:1:exon

CCASEI_RS14235
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14235
old locus tag: CCASEI_14358
so part of: sequence
location: 11476..12162
location: region:11476-12162:1
so has part: feature:11476-12162:1:exon
subclass of: SO_0000010

82878929
type: Gene
SIO_000068: ncbigene

position:11476:1
position: 11476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12162:1
position: 12162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11476-12162:1:exon

CCASEI_RS14235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14235
old locus tag: CCASEI_14358
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: energy-coupling factor transporter transmembrane component T
translation: MTRFNSRRWVPHPLIIVLLTVPAQLAVLLAQRPWFSITVLACCLLVTVVTKPRFAAVFIAAAGALSLVLWVGMGLWLPLEAATNGALRIVALSALLVVPFFYVNWPVLADSLIDRFRVSYRVMDTVLLGERFTMLMRADLRTARRMARLRARGSIRGQTRLLLRTTLPVLVASFRHSDELALALDTRGFGAHPKRTVHQSRPLRAFELAILIAVWVCSIFIAVFLERM
SIO_010081: CCASEI_RS14235
subclass of: SO_0000673
so part of: CCASEI_RS14235
location: 11476..12162
location: region:11476-12162:1
so has part: feature:11476-12162:1:exon

WP_025388378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11476-12162:1:exon

CCASEI_RS14240
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14240
old locus tag: CCASEI_14363
so part of: sequence
location: complement(13012..14439)
location: region:13012-14439:-1
so has part: feature:13012-14439:-1:exon
subclass of: SO_0000010

82878930
type: Gene
SIO_000068: ncbigene

position:13012:-1
position: 13012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14439:-1
position: 14439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13012-14439:-1:exon

CCASEI_RS14240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14240
old locus tag: CCASEI_14363
function: 4.5 Transposon and IS
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011074819.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1380 family transposase
translation: MLFNHSAAGIAYSFDEPNLVSSAGLAPVLRLAQSAGLKRLADEWITVANTGADKGANPGTKITSLVAGMAAGADSIDDMDLLRHGGMKSLFHRVYAPSTLGSHLREYTHGHVKQLAAVASRFLTNLSDHTDLLPVRSPDGTGGDMVFVDVDDTVIEVFSPNKHGAGIGYNKLRGLNGLTATISTAKAAPLVLGQQLRKGAAHSVRGADKLVSDSLATAKRIIDPDTPVLARFDSAFYSANVAKAVRAAGVHYSVTLPQNAAVKKAIAHIPAEAWRGINYPQAIYDDETGRWISDAQVAEIDFTAFSSKAQEEQLAGRLVVRRIPELNTTKLAAAQGQLFDTFRYHAFFTTVEQSVLDTVAADKVHRQHAVVEQVFADLKAGPLAHMPSGRFYANAAWLVIAAISHNLLRAAGSVAGGKLVNARTVSLRQKLVNIPARIAHRARKLILHLPTHWKWATAFDRLWHNTLSPPQLATP
SIO_010081: CCASEI_RS14240
subclass of: SO_0000673
so part of: CCASEI_RS14240
location: complement(13012..14439)
location: region:13012-14439:-1
so has part: feature:13012-14439:-1:exon

WP_006821979.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13012-14439:-1:exon

CCASEI_RS14245
type: Gene
subclass of: SO_0000704
RO_0002162: 1285583
locus tag: CCASEI_RS14245
old locus tag: CCASEI_14368
pseudo: true
so part of: sequence
location: complement(<14564..15145)
location: region:14564-15145:-1
so has part: feature:14564-15145:-1:exon
subclass of: SO_0000010

82878931
type: Gene
SIO_000068: ncbigene

position:14564:-1
position: 14564
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15145:-1
position: 15145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14564-15145:-1:exon

CCASEI_RS14245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1285583
locus tag: CCASEI_RS14245
old locus tag: CCASEI_14368
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: CCASEI_RS14245
subclass of: SO_0000673
so part of: CCASEI_RS14245
location: complement(<14564..15145)
location: region:14564-15145:-1
so has part: feature:14564-15145:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14564-15145:-1:exon