Staphylococcus haemolyticus strain S167 plasmid pSH108, complete sequence.
type: Entry
definition: Staphylococcus haemolyticus strain S167 plasmid pSH108, complete sequence.
sequence version: NZ_CP013912.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP013912.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04361561
keyword: RefSeq
source: Staphylococcus haemolyticus
organism: Staphylococcus haemolyticus
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
reference: 1
references: 27313306
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP013912.1.\nSource bacteria available from KACC (Korean Agricultural Culture\nCollection).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLCbio CLC Genomics Workbench v. 7.5.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 923.99x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 21:24:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,524\nCDSs (total) :: 2,441\nGenes (coding) :: 2,380\nCDSs (with protein) :: 2,380\nGenes (RNA) :: 83\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 28 of 61\nPseudo Genes (incomplete) :: 21 of 61\nPseudo Genes (internal stop) :: 15 of 61\nPseudo Genes (multiple problems) :: 3 of 61\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10808
topology: circular
so has quality: SO_0000988
location: 1..10808
location: region:1-10808:1
RO_0002162: 1283

NZ_CP013912
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04361561
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Biofilm-Forming Strain Staphylococcus haemolyticus S167
author: Hong, J.
author: Kim, J.
author: Kim, B.Y.
author: Park, J.W.
author: Ryu, J.G.
author: Roh, E.
journal: Genome Announc 4 (3), e00567-16 (2016)
pubmed: 27313306
comments: Publication Status: Online-Only

27313306
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hong, J.
author: Kim, J.
author: Roh, E.
journal: Submitted (07-JAN-2016) Microbial Safety Team, National Institute of Agricultural Science, 166 Nongsaengmyeong-Ro, Wanju-Gun 55365, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10808:1
position: 10808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10808:1:source
so part of: sequence
organism: Staphylococcus haemolyticus
mol type: genomic DNA
strain: S167
isolation source: leaf vegetable
plasmid: pSH108
country: South Korea
collection date: 2012

1283
type: Taxonomy
SIO_000068: taxonomy

AV904_RS12275
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12275
old locus tag: AV904_12290
so part of: sequence
location: complement(32..1204)
location: region:32-1204:-1
so has part: feature:32-1204:-1:exon
subclass of: SO_0000010

58063707
type: Gene
SIO_000068: ncbigene

position:32:-1
position: 32
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1204:-1
position: 1204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32-1204:-1:exon

AV904_RS12275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12275
old locus tag: AV904_12290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032495458.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256-like element IS256 family transposase
translation: MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
SIO_010081: AV904_RS12275
subclass of: SO_0000673
so part of: AV904_RS12275
location: complement(32..1204)
location: region:32-1204:-1
so has part: feature:32-1204:-1:exon

WP_000195429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32-1204:-1:exon

AV904_RS12690
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12690
so part of: sequence
location: 1557..1649
location: region:1557-1649:1
so has part: feature:1557-1649:1:exon
subclass of: SO_0000010

58063759
type: Gene
SIO_000068: ncbigene

position:1557:1
position: 1557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1649:1
position: 1649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1557-1649:1:exon

AV904_RS12690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12690
inference: COORDINATES: protein motif:HMM:NF033608.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system Fst family toxin
translation: MLIFVHIIAPVISGCAIAFFTHWLSKCNKK
SIO_010081: AV904_RS12690
subclass of: SO_0000673
so part of: AV904_RS12690
location: 1557..1649
location: region:1557-1649:1
so has part: feature:1557-1649:1:exon

WP_154605967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1557-1649:1:exon

AV904_RS12280
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12280
old locus tag: AV904_12295
so part of: sequence
location: 1801..2400
location: region:1801-2400:1
so has part: feature:1801-2400:1:exon
subclass of: SO_0000010

58063708
type: Gene
SIO_000068: ncbigene

position:1801:1
position: 1801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2400:1
position: 2400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1801-2400:1:exon

AV904_RS12280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12280
old locus tag: AV904_12295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002499093.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISVISYSIEIFKYLYSEFSFPLLIMVIIIIFYKQIKNILDDLTKLHISWNDRSIGIEREKKETVELMQMLLKDKVGSEGKSVIYEGQRGAGGEELDTHDPMYFSNLITSKIFLINQVEKYNKFFIAEKLFEGYESKCMEKYGTNYHGAIIETRDENIILTDETIRKFYFLTKDIEKENEYLSLDDLNKFRLLIFAFTH
SIO_010081: AV904_RS12280
subclass of: SO_0000673
so part of: AV904_RS12280
location: 1801..2400
location: region:1801-2400:1
so has part: feature:1801-2400:1:exon

WP_002380771.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1801-2400:1:exon

AV904_RS12285
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12285
old locus tag: AV904_12300
so part of: sequence
location: complement(2762..3607)
location: region:2762-3607:-1
so has part: feature:2762-3607:-1:exon
subclass of: SO_0000010

58063709
type: Gene
SIO_000068: ncbigene

position:2762:-1
position: 2762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3607:-1
position: 3607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2762-3607:-1:exon

AV904_RS12285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12285
old locus tag: AV904_12300
EC number: 3.5.2.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000733274.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1
translation: MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF
SIO_010081: AV904_RS12285
subclass of: SO_0000673
so part of: AV904_RS12285
location: complement(2762..3607)
location: region:2762-3607:-1
so has part: feature:2762-3607:-1:exon

WP_000733283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2762-3607:-1:exon

AV904_RS12290
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
gene: blaR1
locus tag: AV904_RS12290
old locus tag: AV904_12305
so part of: sequence
location: 3714..5471
location: region:3714-5471:1
so has part: feature:3714-5471:1:exon
subclass of: SO_0000010

58063710
type: Gene
SIO_000068: ncbigene

position:3714:1
position: 3714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5471:1
position: 5471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714-5471:1:exon

AV904_RS12290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
gene: blaR1
locus tag: AV904_RS12290
old locus tag: AV904_12305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001096376.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-lactam sensor/signal transducer BlaR1
translation: MAKLLIMSIVSFCFIFLLLLFFRYILKRYFNYMLNYKVWYLTLLAGLIPFIPIKFSLFKFNNVNNQAPTVESKSHDLNHNINTTKPIQEFATDIHKFNWDSIDNICTVIWIVLVIILSFKFLKALLYLKYLKKQSLYLNENEKNKIDTILFNHQYKKNIVIRKAETIQSPITFWYGKYIILIPSSYFKSVIDKRLKYIILHEYAHAKNRDTLHLIIFNIFSIIMSYNPLVHIVKRKIIHDNEVEADRFVLNNINKNEFKTYAESIMDSVLNVPFFNKNILSHSFNGKKSLLKRRLINIKEANLKKQSKLILIFICIFTFLLMVIQSQFLMGQSITDYNYKKPLHNDYQILDKSKIFGSNSGSFVMYSMKKDKYYIYNEKESRKRYSPNSTYKIYLAMFGLDRHIINDENSRMSWNHKHYPFDAWNKEQDLNTAMQNSVNWYFERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHFSKKAKNQLSSSLLIKKNEKYELYGKTGTGIVNGKYNNGWFVGYVITNHDKYYFATHLSDGKPSGKNAELISEKILKEMGVLNGQ
SIO_010081: AV904_RS12290
subclass of: SO_0000673
so part of: AV904_RS12290
location: 3714..5471
location: region:3714-5471:1
so has part: feature:3714-5471:1:exon

WP_001096374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3714-5471:1:exon

AV904_RS12295
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
gene: blaI
locus tag: AV904_RS12295
old locus tag: AV904_12310
so part of: sequence
location: 5461..5841
location: region:5461-5841:1
so has part: feature:5461-5841:1:exon
subclass of: SO_0000010

58063711
type: Gene
SIO_000068: ncbigene

position:5461:1
position: 5461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5841:1
position: 5841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5461-5841:1:exon

AV904_RS12295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
gene: blaI
locus tag: AV904_RS12295
old locus tag: AV904_12310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001284656.1
GO process: GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: penicillinase repressor BlaI
translation: MANKQVEISMAEWDVMNIIWGKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
SIO_010081: AV904_RS12295
subclass of: SO_0000673
so part of: AV904_RS12295
location: 5461..5841
location: region:5461-5841:1
so has part: feature:5461-5841:1:exon

WP_001284656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5461-5841:1:exon

AV904_RS12300
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12300
old locus tag: AV904_12315
so part of: sequence
location: 6105..6683
location: region:6105-6683:1
so has part: feature:6105-6683:1:exon
subclass of: SO_0000010

58063712
type: Gene
SIO_000068: ncbigene

position:6105:1
position: 6105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6683:1
position: 6683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6105-6683:1:exon

AV904_RS12300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12300
old locus tag: AV904_12315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000690624.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKIGYARVSTGLQNLNLQEDQLNQYGCEKIFSDHISGSKSKRPGLDKAIEFARAGDTIVVWRLDRLGRNMEDLITLVNELNNRGVSFHSLEENITMDKSSSTGQLLFHLFAAFAEFERNLILERSSAGRIAARARGRYGGRPEKLNKQDLKLLKTLYDNGTPIKTIAEQWKVSRTTIYRYLNRLNNQENKDK
SIO_010081: AV904_RS12300
subclass of: SO_0000673
so part of: AV904_RS12300
location: 6105..6683
location: region:6105-6683:1
so has part: feature:6105-6683:1:exon

WP_000690625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6105-6683:1:exon

AV904_RS12305
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12305
old locus tag: AV904_12320
so part of: sequence
location: 6809..7420
location: region:6809-7420:1
so has part: feature:6809-7420:1:exon
subclass of: SO_0000010

58063713
type: Gene
SIO_000068: ncbigene

position:6809:1
position: 6809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7420:1
position: 7420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6809-7420:1:exon

AV904_RS12305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12305
old locus tag: AV904_12320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002487382.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIVGYARVSSVDQNLERQLENLKTFGAEKIFTEKQSGQSIENRPVFQEALNFVRMGDRFVVESIDRLGRNYDEVINTVNYLKEKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRVIYHRVVEMLEEGKAISKIAKEVNITRQTVYRIKHDNDDLF
SIO_010081: AV904_RS12305
subclass of: SO_0000673
so part of: AV904_RS12305
location: 6809..7420
location: region:6809-7420:1
so has part: feature:6809-7420:1:exon

WP_000635275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6809-7420:1:exon

AV904_RS12310
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12310
old locus tag: AV904_12325
so part of: sequence
location: complement(7570..8427)
location: region:7570-8427:-1
so has part: feature:7570-8427:-1:exon
subclass of: SO_0000010

58063714
type: Gene
SIO_000068: ncbigene

position:7570:-1
position: 7570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8427:-1
position: 8427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7570-8427:-1:exon

AV904_RS12310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12310
old locus tag: AV904_12325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002499202.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YitT family protein
translation: MTKKMVIISFGRILLIIIGALITAYGLESILIPNNVSDGGVTGISIVGSTLFGLPLGILIGIINLPFIWLGYKQIGRKFAIFSIIGILSLSIFTSIMHHVPTIIEGDSLLITVVGGVVIGLGMGLALRNGGALDGIDMLAVLLSRKLPFGTSDLILFLNTFVFILVSTVFGFKGAILSALAYFIASKVIHIIEEGLSGSKTFKIITKDYDIMNKEIKERLGRYCTFTKVTIDEENNSFVEISCVINKLEEQKLKEIINDVDPDAFIAIYDTAEVKAGNMKKSDIY
SIO_010081: AV904_RS12310
subclass of: SO_0000673
so part of: AV904_RS12310
location: complement(7570..8427)
location: region:7570-8427:-1
so has part: feature:7570-8427:-1:exon

WP_000162894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7570-8427:-1:exon

AV904_RS12315
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12315
old locus tag: AV904_12330
so part of: sequence
location: complement(8676..9755)
location: region:8676-9755:-1
so has part: feature:8676-9755:-1:exon
subclass of: SO_0000010

58063715
type: Gene
SIO_000068: ncbigene

position:8676:-1
position: 8676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9755:-1
position: 9755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8676-9755:-1:exon

AV904_RS12315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12315
old locus tag: AV904_12330
EC number: 2.3.2.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016930871.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-glutamyltransferase
translation: MIKKYGFCCKVKKYSKGIDKSSPFFKGDGNTVKNGDIVKQPQLTKTLKGIKNNGPNYFYDKLAKHLTTELNGQIDKTDFNNYKSKQKKPSETKYLNTHVYSSSNPLGGGLMLQGLKLDEMLNNGQSDEQYLNSVLSGRDLMYSNRDIVNAKTNFSQEYLSNMYISNKYNNQNTSDSISDNSVKKTSTLHFVVVNKQGQMTSTTNTLSGYFGSGKYMDEGFYMNNSMTNFSDNKDSNNYHAKNTVPRSYISPTIIVGPDYYMGIGSPGGNKIPTILNEVIIDYLRGNGSLQDSIYKPRFYNDGNTVHFEKGMNKKYLDILQNQGYNIKEEKDNPNFGSVQAGIYHIKNKKTEIANDVGTR
SIO_010081: AV904_RS12315
subclass of: SO_0000673
so part of: AV904_RS12315
location: complement(8676..9755)
location: region:8676-9755:-1
so has part: feature:8676-9755:-1:exon

WP_012818272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8676-9755:-1:exon

AV904_RS12320
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12320
old locus tag: AV904_12335
so part of: sequence
location: 9727..10149
location: region:9727-10149:1
so has part: feature:9727-10149:1:exon
subclass of: SO_0000010

58063716
type: Gene
SIO_000068: ncbigene

position:9727:1
position: 9727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10149:1
position: 10149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9727-10149:1:exon

AV904_RS12320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12320
old locus tag: AV904_12335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002499214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VOC family protein
translation: MQQNPYFLITNNAEKLRIRLEELFNANTVYIQRIKDRPLEARKDVDERDLEKIDQCVILFGDVKLMIADDTEGLPITKGNNVSLCVTFENVEDTKRIYDKFVELGSEILLPFAPKFYTEGYGYVKDEFGIAYHLFTKRKN
SIO_010081: AV904_RS12320
subclass of: SO_0000673
so part of: AV904_RS12320
location: 9727..10149
location: region:9727-10149:1
so has part: feature:9727-10149:1:exon

WP_002499214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9727-10149:1:exon

AV904_RS12540
type: Gene
subclass of: SO_0000704
RO_0002162: 1283
locus tag: AV904_RS12540
so part of: sequence
location: complement(10279..10686)
location: region:10279-10686:-1
so has part: feature:10279-10686:-1:exon
subclass of: SO_0000010

58063741
type: Gene
SIO_000068: ncbigene

position:10279:-1
position: 10279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10686:-1
position: 10686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10279-10686:-1:exon

AV904_RS12540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1283
locus tag: AV904_RS12540
inference: COORDINATES: protein motif:HMM:NF016294.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
translation: MEFYRKELQERSKLLENQQVLALESNKKIQKLESQLEEERQLNYSFDTATNNRQNIDPQEATFTEESQNINQQQTKCQPTEVNYKDIAEEKENDSTNEGELIKEDKFVEETKSDPDDNKEVEPPKKGFWSRFFGN
SIO_010081: AV904_RS12540
subclass of: SO_0000673
so part of: AV904_RS12540
location: complement(10279..10686)
location: region:10279-10686:-1
so has part: feature:10279-10686:-1:exon

WP_235601758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10279-10686:-1:exon