Staphylococcus epidermidis strain ATCC 14990 plasmid unnamed1, complete sequence.
type: Entry
definition: Staphylococcus epidermidis strain ATCC 14990 plasmid unnamed1, complete sequence.
sequence version: NZ_CP035289.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NZ_CP035289.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10738425
keyword: RefSeq
source: Staphylococcus epidermidis
organism: Staphylococcus epidermidis
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035289.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 240.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:19:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,363\nCDSs (total) :: 2,279\nGenes (coding) :: 2,227\nCDSs (with protein) :: 2,227\nGenes (RNA) :: 84\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 33 of 52\nPseudo Genes (incomplete) :: 30 of 52\nPseudo Genes (internal stop) :: 22 of 52\nPseudo Genes (multiple problems) :: 26 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20117
topology: circular
so has quality: SO_0000988
location: 1..20117
location: region:1-20117:1
RO_0002162: 1282

NZ_CP035289
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10738425
type: BioSample
SIO_000068: biosample

1
title: Staphylococcus epidermidis Genome sequence and assembly
author: Chen, H.
author: Liang, Q.
journal: Unpublished

2
title: Direct Submission
author: Chen, H.
author: Liang, Q.
journal: Submitted (16-JAN-2019) Key Laboratory of Microbial Technology and Bioinformatics of Zhejiang Province, Zhejiang Tianke High Technology Development Co.Ltd., Huanggushan Road, Hangzhou, Zhejiang 310000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20117:1
position: 20117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20117:1:source
so part of: sequence
organism: Staphylococcus epidermidis
mol type: genomic DNA
strain: ATCC 14990
culture collection: ATCC:14990
type material: type strain of Staphylococcus epidermidis
plasmid: unnamed1

1282
type: Taxonomy
SIO_000068: taxonomy

EQW00_RS12145
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12145
old locus tag: EQW00_12160
so part of: sequence
location: 1..936
location: region:1-936:1
so has part: feature:1-936:1:exon
subclass of: SO_0000010

50019725
type: Gene
SIO_000068: ncbigene

position:936:1
position: 936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-936:1:exon

EQW00_RS12145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12145
old locus tag: EQW00_12160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002387626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MPNFEKYNLSQVKTERFYQLPKYLFEDAYFKKMSAEAKIMYALLKDRFELSLQNEWVDKNNNIYFIFSNKHLCEYLGYAEQKIIKLKKELIKFNLLTQERVGLNKPNRLYLLKPNYNIKASHTKELPNSQFQNNEFGSSRTVNLSGQELPNSQSNDTDYNDTDYIKTESNDTDDLNDNKLNYPSNHTSHSNHYYSKFNDDALKFQLLEELPQSIQNYLNNFSVDEIKLIKSVLLKAKTSFNNSIDTYYLLEDMEIEILHVLKRFKAVLIQKNETVEAMQGYLMKSLKSEFAEVHTLNKRRDNLPITSLFNT
SIO_010081: EQW00_RS12145
subclass of: SO_0000673
so part of: EQW00_RS12145
location: 1..936
location: region:1-936:1
so has part: feature:1-936:1:exon

WP_002387626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-936:1:exon

EQW00_RS12150
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12150
old locus tag: EQW00_12165
so part of: sequence
location: complement(1165..1404)
location: region:1165-1404:-1
so has part: feature:1165-1404:-1:exon
subclass of: SO_0000010

50019726
type: Gene
SIO_000068: ncbigene

position:1165:-1
position: 1165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1404:-1
position: 1404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1165-1404:-1:exon

EQW00_RS12150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12150
old locus tag: EQW00_12165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002505615.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3847 domain-containing protein
translation: MNDFKNLKKTNAAIEKAELRKNRIKNLDRKERAHRLIRKGAMLEKYFECEHLSPDETEELLKIYSNYINTNKPNKYKKK
SIO_010081: EQW00_RS12150
subclass of: SO_0000673
so part of: EQW00_RS12150
location: complement(1165..1404)
location: region:1165-1404:-1
so has part: feature:1165-1404:-1:exon

WP_057504647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1165-1404:-1:exon

EQW00_RS12155
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12155
old locus tag: EQW00_12170
so part of: sequence
location: complement(1409..1690)
location: region:1409-1690:-1
so has part: feature:1409-1690:-1:exon
subclass of: SO_0000010

50019727
type: Gene
SIO_000068: ncbigene

position:1409:-1
position: 1409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1690:-1
position: 1690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1409-1690:-1:exon

EQW00_RS12155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12155
old locus tag: EQW00_12170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002489259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKIKQTDITKLSQLEQQIEQLKAQKKKQEAQLSHKIGGYFLNELDLNRINSSDELYKIMDKVIEEFNKNIEQNGSNRNNENLKENEINQNSK
SIO_010081: EQW00_RS12155
subclass of: SO_0000673
so part of: EQW00_RS12155
location: complement(1409..1690)
location: region:1409-1690:-1
so has part: feature:1409-1690:-1:exon

WP_057504646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1409-1690:-1:exon

EQW00_RS12160
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12160
old locus tag: EQW00_12175
so part of: sequence
location: 1894..3816
location: region:1894-3816:1
so has part: feature:1894-3816:1:exon
subclass of: SO_0000010

50019728
type: Gene
SIO_000068: ncbigene

position:1894:1
position: 1894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3816:1
position: 3816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1894-3816:1:exon

EQW00_RS12160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12160
old locus tag: EQW00_12175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002387629.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MNKGYFMLRVTNINRATKNIVASASYRSDKALYSERTDEKIKFRNHIVKPESMILTPQHAPEWTKDREHLWNEVDKVEKNNAKTKNPRLAKEVLLSLPNDFDREVQTELTKDFIKSEFVDKGMVADISIHRDDMNNPHAHVLLTQRPFNSDGTWGKKTKTRTRYDENGHAILNKNGNKVRKQERFADFDFKEVRKHWELKLNQYSEREQSLRRYDSRSFEAQGLDKIAEIPLTREEYRLEQNEKRRCEKEGIEYKPVTYYGQKNDQIRRYNRGEVSQIFSDKEKKQAQNEIRLFIQNANDQVSKNEQNYSILFDRYQREVGYSEAKETIKNTFDSASTFGRKIQNDLLKNEIKRRQLKFYAKNYDENYQFRKEIESKGYNQQEFVNTVETNYKALLNEKNKLENREEKRKKIYQSAKDVYLTESEKNNLIVQQMYPKSHYRFSHDEKAFIVDEAQKGNIIKASHVRYLFKQSNHIPSDVFLEDTYKKASKDIFFSERHLKHLEKDSFEYNVELQFIKEKEKEIDSYKEHIDNDLRIDIGDKNFEKVKDQTPNEKVQLLIKLEKYNNVDQEEVIEKHINQVDRNDNDNHLEHEYGQSNHIHLPTINASDFLMYYANETEKQNNINHNKKKKKQERNNQMRR
SIO_010081: EQW00_RS12160
subclass of: SO_0000673
so part of: EQW00_RS12160
location: 1894..3816
location: region:1894-3816:1
so has part: feature:1894-3816:1:exon

WP_057504645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1894-3816:1:exon

EQW00_RS12165
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12165
old locus tag: EQW00_12180
so part of: sequence
location: 4107..4781
location: region:4107-4781:1
so has part: feature:4107-4781:1:exon
subclass of: SO_0000010

50019729
type: Gene
SIO_000068: ncbigene

position:4107:1
position: 4107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4781:1
position: 4781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4107-4781:1:exon

EQW00_RS12165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12165
old locus tag: EQW00_12180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000559653.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVISIIIAIVSLISSIRSRIYQKTKDNKLLRPQLLLEAQKKQTTDYIGIDFEIEGYEKLKDYNVLLKFFNNTDAKIIDLSVSVNVLKNETFYYLLDKALEEKDNNFYCETDKSGNIFYTWDKVFGMPETTNVQQSILEGGNSFEIELPGIFSALLLGAMYSYRMDFKKTNSVIEFEVDISYNHALTKKNKYVKIKEIIPVTITFNNMIQGPYVLYDSFIFKQL
SIO_010081: EQW00_RS12165
subclass of: SO_0000673
so part of: EQW00_RS12165
location: 4107..4781
location: region:4107-4781:1
so has part: feature:4107-4781:1:exon

WP_225973520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4107-4781:1:exon

EQW00_RS12600
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12600
so part of: sequence
location: complement(4793..5455)
location: region:4793-5455:-1
so has part: feature:4793-5455:-1:exon
subclass of: SO_0000010

71692529
type: Gene
SIO_000068: ncbigene

position:4793:-1
position: 4793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5455:-1
position: 5455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4793-5455:-1:exon

EQW00_RS12600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKIDWSRNFEWFVNIGGTISSILVIIYMIILIKYILFDKTTTLKVNVYATLTEHYHEALTKTPEEIKNYFQNKFPIGKTEIIPNEFIAEKKRKIMAEIILTNPNKLAVVIGSDEHDIKILNIYNREGNKIEHINVNKRKDMPTKNQTEIEKGQLKLNKGDYIAILTQEFGENGEQEIEIEVDGHKKTISLSPLHMNPNPTNYIEVKNNIKSYIIKYLKK
SIO_010081: EQW00_RS12600
subclass of: SO_0000673
so part of: EQW00_RS12600
location: complement(4793..5455)
location: region:4793-5455:-1
so has part: feature:4793-5455:-1:exon

WP_225973519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4793-5455:-1:exon

EQW00_RS12180
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12180
old locus tag: EQW00_12195
so part of: sequence
location: 5662..5763
location: region:5662-5763:1
so has part: feature:5662-5763:1:exon
subclass of: SO_0000010

50019732
type: Gene
SIO_000068: ncbigene

position:5662:1
position: 5662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5763:1
position: 5763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5662-5763:1:exon

EQW00_RS12180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12180
old locus tag: EQW00_12195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000228874.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system Fst family toxin
translation: MVEALVHITTTIISGCIVALFTHWLRTRNNKKK
SIO_010081: EQW00_RS12180
subclass of: SO_0000673
so part of: EQW00_RS12180
location: 5662..5763
location: region:5662-5763:1
so has part: feature:5662-5763:1:exon

WP_138936985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5662-5763:1:exon

EQW00_RS12185
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12185
old locus tag: EQW00_12200
so part of: sequence
location: complement(6336..6485)
location: region:6336-6485:-1
so has part: feature:6336-6485:-1:exon
subclass of: SO_0000010

50019733
type: Gene
SIO_000068: ncbigene

position:6336:-1
position: 6336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6485:-1
position: 6485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6336-6485:-1:exon

EQW00_RS12185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12185
old locus tag: EQW00_12200
inference: COORDINATES: protein motif:HMM:NF014160.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metallothionein
translation: MEKCARPNCNCVLGETKVEEAGKVYCSQECVDNCTDEVCECKDCSCATA
SIO_010081: EQW00_RS12185
subclass of: SO_0000673
so part of: EQW00_RS12185
location: complement(6336..6485)
location: region:6336-6485:-1
so has part: feature:6336-6485:-1:exon

WP_002499090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6336-6485:-1:exon

EQW00_RS12190
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12190
old locus tag: EQW00_12205
so part of: sequence
location: complement(6502..6846)
location: region:6502-6846:-1
so has part: feature:6502-6846:-1:exon
subclass of: SO_0000010

50019734
type: Gene
SIO_000068: ncbigene

position:6502:-1
position: 6502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6846:-1
position: 6846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6502-6846:-1:exon

EQW00_RS12190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12190
old locus tag: EQW00_12205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002485687.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MSENWCTPKPKLTERPLLDTENAESLSETFKILSNGTRLRILHTLLRTPNASVSEVAEQLEMKPQAISNQLQRLVDKGIVCSIREANFIRYRIVDNCVVSLLDRGWCLTEDLPK
SIO_010081: EQW00_RS12190
subclass of: SO_0000673
so part of: EQW00_RS12190
location: complement(6502..6846)
location: region:6502-6846:-1
so has part: feature:6502-6846:-1:exon

WP_002469035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6502-6846:-1:exon

EQW00_RS12195
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12195
old locus tag: EQW00_12210
so part of: sequence
location: 7361..7978
location: region:7361-7978:1
so has part: feature:7361-7978:1:exon
subclass of: SO_0000010

50019735
type: Gene
SIO_000068: ncbigene

position:7361:1
position: 7361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7978:1
position: 7978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7361-7978:1:exon

EQW00_RS12195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12195
old locus tag: EQW00_12210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017465246.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CadD family cadmium resistance transporter
translation: MIQTIVTAAVLYIVTALDLLVILLMFFARAKTRKEYRDIYIGQYVGSVTLIVISLFFAFVLNYVPEKWILGLLGLIPIYLGIKVAIYGDSDGEERAKKELNEKGLSKLVGTIAIITIASCGADNIGVFVPYFVTLSVTNLLITLFVFLILIFVLVFTAQKLANIPGVGEIVEKFGRWIMAVIYIALGLFIIIENDTIQTILGFIF
SIO_010081: EQW00_RS12195
subclass of: SO_0000673
so part of: EQW00_RS12195
location: 7361..7978
location: region:7361-7978:1
so has part: feature:7361-7978:1:exon

WP_057504642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7361-7978:1:exon

EQW00_RS12200
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12200
old locus tag: EQW00_12215
so part of: sequence
location: 7997..8344
location: region:7997-8344:1
so has part: feature:7997-8344:1:exon
subclass of: SO_0000010

50019736
type: Gene
SIO_000068: ncbigene

position:7997:1
position: 7997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8344:1
position: 8344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7997-8344:1:exon

EQW00_RS12200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12200
old locus tag: EQW00_12215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020366422.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MSYKNACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLILKMSVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEIREFFSKNQEGF
SIO_010081: EQW00_RS12200
subclass of: SO_0000673
so part of: EQW00_RS12200
location: 7997..8344
location: region:7997-8344:1
so has part: feature:7997-8344:1:exon

WP_002467551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7997-8344:1:exon

EQW00_RS12205
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12205
old locus tag: EQW00_12220
so part of: sequence
location: 8514..8606
location: region:8514-8606:1
so has part: feature:8514-8606:1:exon
subclass of: SO_0000010

50019737
type: Gene
SIO_000068: ncbigene

position:8514:1
position: 8514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8606:1
position: 8606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8514-8606:1:exon

EQW00_RS12205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12205
old locus tag: EQW00_12220
inference: COORDINATES: protein motif:HMM:NF033608.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system Fst family toxin
translation: MLIIFVHIIAPVISGCAVAYYTYWLSKRNK
SIO_010081: EQW00_RS12205
subclass of: SO_0000673
so part of: EQW00_RS12205
location: 8514..8606
location: region:8514-8606:1
so has part: feature:8514-8606:1:exon

WP_001791613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8514-8606:1:exon

EQW00_RS12210
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12210
old locus tag: EQW00_12225
so part of: sequence
location: 9072..9683
location: region:9072-9683:1
so has part: feature:9072-9683:1:exon
subclass of: SO_0000010

50019738
type: Gene
SIO_000068: ncbigene

position:9072:1
position: 9072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9683:1
position: 9683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9072-9683:1:exon

EQW00_RS12210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12210
old locus tag: EQW00_12225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002487382.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIVGYARVSSVDQNLERQLENLKTFGAEKIFTEKQSGQSIENRPVFQEALNFVRMGDRFVVESIDRLGRNYDEVINTVNYLKEKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRVIYHRVVEMLEEGKAISKIAKEVNITRQTVYRIKHDNDDLF
SIO_010081: EQW00_RS12210
subclass of: SO_0000673
so part of: EQW00_RS12210
location: 9072..9683
location: region:9072-9683:1
so has part: feature:9072-9683:1:exon

WP_000635275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9072-9683:1:exon

EQW00_RS12215
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12215
old locus tag: EQW00_12230
so part of: sequence
location: 9831..10505
location: region:9831-10505:1
so has part: feature:9831-10505:1:exon
subclass of: SO_0000010

50019739
type: Gene
SIO_000068: ncbigene

position:9831:1
position: 9831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10505:1
position: 10505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9831-10505:1:exon

EQW00_RS12215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12215
old locus tag: EQW00_12230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS257 family transposase
translation: MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
SIO_010081: EQW00_RS12215
subclass of: SO_0000673
so part of: EQW00_RS12215
location: 9831..10505
location: region:9831-10505:1
so has part: feature:9831-10505:1:exon

WP_001105987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9831-10505:1:exon

EQW00_RS12220
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12220
old locus tag: EQW00_12235
so part of: sequence
location: 10768..11625
location: region:10768-11625:1
so has part: feature:10768-11625:1:exon
subclass of: SO_0000010

50019740
type: Gene
SIO_000068: ncbigene

position:10768:1
position: 10768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11625:1
position: 11625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10768-11625:1:exon

EQW00_RS12220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12220
old locus tag: EQW00_12235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002499202.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YitT family protein
translation: MTKKMVIISFGRILLIIIGALITAYGLESILIPNNVSDGGVTGISIVGSTLFGLPLGILIGIINLPFIWLGYKQIGRKFAIFSIIGILSLSIFTSIMHHVPTIIEGDSLLITVVGGVVIGLGMGLALRNGGALDGIDMLAVLLSRKLPFGTSDLILFLNTFVFILVSTVFGFKGAILSALAYFIASKVIHIIEEGLSGSKTFKIITKDYDIMNKEIKERLGRYCTFTKVTIDEENNSFVEISCVINKLEEQKLKEIINDVDPDAFIAIYDTAEVKAGNMKKSDIY
SIO_010081: EQW00_RS12220
subclass of: SO_0000673
so part of: EQW00_RS12220
location: 10768..11625
location: region:10768-11625:1
so has part: feature:10768-11625:1:exon

WP_000162894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10768-11625:1:exon

EQW00_RS12225
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12225
old locus tag: EQW00_12240
pseudo: true
so part of: sequence
location: complement(11703..>12227)
location: region:11703-12227:-1
so has part: feature:11703-12227:-1:exon
subclass of: SO_0000010

50019741
type: Gene
SIO_000068: ncbigene

position:11703:-1
position: 11703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12227:-1
position: 12227
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11703-12227:-1:exon

EQW00_RS12225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12225
old locus tag: EQW00_12240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: EQW00_RS12225
subclass of: SO_0000673
so part of: EQW00_RS12225
location: complement(11703..>12227)
location: region:11703-12227:-1
so has part: feature:11703-12227:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11703-12227:-1:exon

EQW00_RS12230
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12230
old locus tag: EQW00_12245
so part of: sequence
location: complement(12653..13195)
location: region:12653-13195:-1
so has part: feature:12653-13195:-1:exon
subclass of: SO_0000010

50019742
type: Gene
SIO_000068: ncbigene

position:12653:-1
position: 12653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13195:-1
position: 13195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12653-13195:-1:exon

EQW00_RS12230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12230
old locus tag: EQW00_12245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011251335.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKYGYIRPVTINDDLNEQKKKIETYTKKIVEESHANNKKRNELDLLLKKKLVSGDAVYITDLCILADSTKQLVDILDYLSQKDISLYVINLNRYIYKNIQGEFLEILHDITDFQSDVVKFRTRVGLENYTKEGKKLGRPKRDDKNLRDAIEMYMSKNYTLDEIKEKTNISRATLYRHLDK
SIO_010081: EQW00_RS12230
subclass of: SO_0000673
so part of: EQW00_RS12230
location: complement(12653..13195)
location: region:12653-13195:-1
so has part: feature:12653-13195:-1:exon

WP_002447401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12653-13195:-1:exon

EQW00_RS12235
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12235
old locus tag: EQW00_12250
so part of: sequence
location: 13310..14761
location: region:13310-14761:1
so has part: feature:13310-14761:1:exon
subclass of: SO_0000010

50019743
type: Gene
SIO_000068: ncbigene

position:13310:1
position: 13310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14761:1
position: 14761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13310-14761:1:exon

EQW00_RS12235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12235
old locus tag: EQW00_12250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000229532.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SulP family inorganic anion transporter
translation: MVEKLKHEWFNQPGKNILAGIVVALALIPEAIAFSIIAGVDPMVGLYASFIIAVVTAIVGGRPAMISGATGAVALLVTPLVKDYGVEYLLAATILMGVIQLVLGLLKVGRLMKFIPHSVMIGFVNALGIMIFMSQIEHIFGISISTYIYVIVTLLIVYIIPKFFKAIPAPLIAIIVLTALYMYTGSDVRTVGDLGNIKQALPHFLIPNVPFNLETLQIIFPYSLSMAIVGLVESLLTAKIVDDATDTYSSKNRESRGQGIANMITGLFGGMGGCAMIGQSVINVKSGANSRLSTFSAGVVLIFMIIVLGGLVVQIPMPILAGIMVMVSIGTFDWNSFKYIQKAPKTDAVVMILTVIIVLMTHNLALGVVVGVIFSALFFATKISKVEVTSEKFGKTNRLSFKGQIFFVSIDSMMDQISFNIENSIIELNFNNAHLWDDSAVDAIDTMVRKFEEKNNIVHVEKLNSDSRKIVSELSKLNENHLN
SIO_010081: EQW00_RS12235
subclass of: SO_0000673
so part of: EQW00_RS12235
location: 13310..14761
location: region:13310-14761:1
so has part: feature:13310-14761:1:exon

WP_002447402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13310-14761:1:exon

EQW00_RS12240
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12240
old locus tag: EQW00_12255
so part of: sequence
location: 14774..15187
location: region:14774-15187:1
so has part: feature:14774-15187:1:exon
subclass of: SO_0000010

50019744
type: Gene
SIO_000068: ncbigene

position:14774:1
position: 14774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15187:1
position: 15187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14774-15187:1:exon

EQW00_RS12240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12240
old locus tag: EQW00_12255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000282781.1
GO function: GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: universal stress protein
translation: MYKSILLAADGSENSLRSAQEVLNFIDENTIVTLITVVNVEESKTDVLHGKQGHSLTNEREDKLSSITELFVEHNVNYEVKIAHGLPAETVVSVANSGKYQAIVLGSRGLNSLQEMVLGSVSHKVAKRSKIPVIIVK
SIO_010081: EQW00_RS12240
subclass of: SO_0000673
so part of: EQW00_RS12240
location: 14774..15187
location: region:14774-15187:1
so has part: feature:14774-15187:1:exon

WP_002447403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14774-15187:1:exon

EQW00_RS12245
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12245
old locus tag: EQW00_12260
so part of: sequence
location: 15532..16731
location: region:15532-16731:1
so has part: feature:15532-16731:1:exon
subclass of: SO_0000010

50019745
type: Gene
SIO_000068: ncbigene

position:15532:1
position: 15532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16731:1
position: 16731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15532-16731:1:exon

EQW00_RS12245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12245
old locus tag: EQW00_12260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_071813258.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110-like element ISSep2 family transposase
translation: MDYLGVDISKRSSVVAHYKNEKFQKEFFIQNNKNGYNYLLKYLNDLDHPQLIFESTGIYSRSMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTDNLPIHELIFFELREHVRFHLEIENEQNRLKFQILELFHQTFPGLERLFSSRYSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
SIO_010081: EQW00_RS12245
subclass of: SO_0000673
so part of: EQW00_RS12245
location: 15532..16731
location: region:15532-16731:1
so has part: feature:15532-16731:1:exon

WP_280114369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15532-16731:1:exon

EQW00_RS12250
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12250
old locus tag: EQW00_12265
so part of: sequence
location: complement(16814..18508)
location: region:16814-18508:-1
so has part: feature:16814-18508:-1:exon
subclass of: SO_0000010

50019746
type: Gene
SIO_000068: ncbigene

position:16814:-1
position: 16814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18508:-1
position: 18508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16814-18508:-1:exon

EQW00_RS12250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12250
old locus tag: EQW00_12265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002496096.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1182-like element ISSep1 family transposase
translation: MYKDYNMTQLTLPMETSVLIPTNDISRHVNDIVETIPETEFDEFRHHRGATSYHPKMMLKVVLYAYTQSVFSGRKIEKLLNDSIRMMWLSQNQKPSYKTINRFRVNPKVDALLESLFIQFHSQCLKQNLIDDQAIFIDGTKVEANANRYTFVWKKSIQNHESRMNENSKALYHELVINKIIPEIKKDHDNDLTKEEIDLIGSHLDKEIEDLNQHIDNEKCTKIRKQIRLKRTKIKKYKKQINDYSQRKHKYEVQKSILKDRNSYSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLFYNVYQNPTDTRTMIPFLNTIQETYGHLPEYIVADAGYGSEANYMAIIDNFNRTPLITYGMFIKDKTKKYKSDIFNTQNWDYDEINDEFICPNNKRLGFKRYAYRHDKYGFKRDFKLYECDDCSECPLKQQCMNFNSKTNKKIMKNYNWEYFKAQINKKLSEPKTKTIYSQRKIDVEPVFGFMKAILGFTRMSVRGIDKAKRELGFVLMALNIRKVTAQRAENNQKNNKKDNFYIISIEIVFFYLSWDFMSHTLFLRLVKYL
SIO_010081: EQW00_RS12250
subclass of: SO_0000673
so part of: EQW00_RS12250
location: complement(16814..18508)
location: region:16814-18508:-1
so has part: feature:16814-18508:-1:exon

WP_138936986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16814-18508:-1:exon

EQW00_RS12255
type: Gene
subclass of: SO_0000704
RO_0002162: 1282
locus tag: EQW00_RS12255
old locus tag: EQW00_12270
so part of: sequence
location: complement(18950..19678)
location: region:18950-19678:-1
so has part: feature:18950-19678:-1:exon
subclass of: SO_0000010

50019747
type: Gene
SIO_000068: ncbigene

position:18950:-1
position: 18950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19678:-1
position: 19678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18950-19678:-1:exon

EQW00_RS12255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1282
locus tag: EQW00_RS12255
old locus tag: EQW00_12270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002484560.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
translation: MKTIKMIADELGVTKQTIVNNAKRLNISFEKENGINYINDNDYLKIIEKITKKERTTQNKESVKKELFDENTAKVEKYIYNNSNSSETLKTKVNELEKQIEIFETRAKNDEKYIENLTKQLDQQNSNVNTLNKLLENQQILALESNKKIQKLENQLEEERQLNYSFDKSTNDRKNFDVQEASYTSDSVNTNQYQKEEINPVVQSKGISENQQDGEKQKENDKGIAIEETQTKKGFWSRLFGG
SIO_010081: EQW00_RS12255
subclass of: SO_0000673
so part of: EQW00_RS12255
location: complement(18950..19678)
location: region:18950-19678:-1
so has part: feature:18950-19678:-1:exon

WP_002387625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18950-19678:-1:exon