Staphylococcus epidermidis strain ATCC 14990 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
Staphylococcus epidermidis Genome sequence and assembly
Submitted (16-JAN-2019) Key Laboratory of Microbial Technology and Bioinformatics of Zhejiang Province, Zhejiang Tianke High Technology Development Co.Ltd., Huanggushan Road, Hangzhou, Zhejiang 310000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP035289.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 240.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:19:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,363\nCDSs (total) :: 2,279\nGenes (coding) :: 2,227\nCDSs (with protein) :: 2,227\nGenes (RNA) :: 84\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 33 of 52\nPseudo Genes (incomplete) :: 30 of 52\nPseudo Genes (internal stop) :: 22 of 52\nPseudo Genes (multiple problems) :: 26 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Staphylococcus epidermidis
COORDINATES: similar to AA sequence:RefSeq:WP_002387626.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002505615.1
COORDINATES: similar to AA sequence:RefSeq:WP_002489259.1
COORDINATES: similar to AA sequence:RefSeq:WP_002387629.1
COORDINATES: similar to AA sequence:RefSeq:WP_000559653.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000228874.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: protein motif:HMM:NF014160.2
COORDINATES: similar to AA sequence:RefSeq:WP_002485687.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_017465246.1
CadD family cadmium resistance transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020366422.1
COORDINATES: protein motif:HMM:NF033608.1
COORDINATES: similar to AA sequence:RefSeq:WP_002487382.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS257 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002499202.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011251335.1
COORDINATES: similar to AA sequence:RefSeq:WP_000229532.1
GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000282781.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_071813258.1
IS110-like element ISSep2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002496096.1
IS1182-like element ISSep1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002484560.1