Spiroplasma phoeniceum P40 plasmid pSPh245, complete sequence.
type: Entry
definition: Spiroplasma phoeniceum P40 plasmid pSPh245, complete sequence.
sequence version: NZ_CP031091.1
sequence date: 2023-05-05
sequence: sequence
division: CON
label: NZ_CP031091.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08579949
keyword: RefSeq
source: Spiroplasma phoeniceum P40
organism: Spiroplasma phoeniceum P40
taxonomy: Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031091.1.\nBacteria and source DNA available from Gail Gasparich - Salem\nUniversity.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nExpected Final Version :: yes\nGenome Coverage :: 110.5x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 01:24:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,565\nCDSs (total) :: 2,516\nGenes (coding) :: 2,417\nCDSs (with protein) :: 2,417\nGenes (RNA) :: 49\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 99\nCDSs (without protein) :: 99\nPseudo Genes (ambiguous residues) :: 0 of 99\nPseudo Genes (frameshifted) :: 44 of 99\nPseudo Genes (incomplete) :: 54 of 99\nPseudo Genes (internal stop) :: 33 of 99\nPseudo Genes (multiple problems) :: 30 of 99\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24478
topology: circular
so has quality: SO_0000988
location: 1..24478
location: region:1-24478:1
RO_0002162: 1276259

NZ_CP031091
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08579949
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Spiroplasma phoeniceum
author: Davis, R.E.
author: Shao, J.Y.
author: Zhao, Y.
author: Silver, A.
author: Stump, z.
author: Gasparich, G.
journal: Unpublished

2
title: Direct Submission
author: Davis, R.E.
author: Shao, J.Y.
author: Zhao, Y.
author: Silver, A.
author: Stump, Z.
author: Gasparich, G.
journal: Submitted (16-AUG-2018) United States Department of Agriculture, Beltsville Agricultural Research Center, 10300 Baltimore Ave., Beltsville, MD 20705, USA
comments: Protein update by submitter

3
title: Direct Submission
author: Davis, R.E.
author: Shao, J.Y.
author: Zhao, Y.
author: Silver, A.
author: Stump, Z.
author: Gasparich, G.
journal: Submitted (17-JUL-2018) United States Department of Agriculture, Beltsville Agricultural Research Center, 10300 Baltimore Ave., Beltsville, MD 20705, United States of America

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24478:1
position: 24478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24478:1:source
so part of: sequence
organism: Spiroplasma phoeniceum P40
mol type: genomic DNA
strain: P40
isolation source: plant periwinkle
host: Catharanthus roseus
type material: type strain of Spiroplasma phoeniceum
plasmid: pSPh245
country: Syria
collection date: 1984
identified by: Saillard et al.

1276259
type: Taxonomy
SIO_000068: taxonomy

SDAV_RS11385
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11385
so part of: sequence
location: complement(join(24308..24478,1..228))
location: region:1-24478:-1
so has part: feature:1-228:-1:exon
so has part: feature:24308-24478:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24478:-1
position: 24478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-228:-1:exon

position:228:-1
position: 228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24308-24478:-1:exon

position:24308:-1
position: 24308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SDAV_RS11385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MYSDLTNIDLAKLQEYIIQLYKNFKITADTNLKKLSRKDYPILTDLYNLVYQKEQDTLLEKMLWKLTKGADGTLFNFGTPITRNPALPTLLIARGFGLMFVFRSGEFMLVILIAINITNINSPSSFFFFAVP
SIO_010081: SDAV_RS11385
subclass of: SO_0000673
so part of: SDAV_RS11385
location: complement(join(24308..24478,1..228))
location: region:1-24478:-1
so has part: feature:1-228:-1:exon
so has part: feature:24308-24478:-1:exon

WP_114565692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-228:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:24308-24478:-1:exon

SDAV_RS11390
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11390
so part of: sequence
location: complement(359..817)
location: region:359-817:-1
so has part: feature:359-817:-1:exon
subclass of: SO_0000010

position:359:-1
position: 359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817:-1
position: 817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359-817:-1:exon

SDAV_RS11390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKMVSLVFTCFADSKTGLDQVVSNLKNEMIRNRFTINDLTFRQFTTYKFLLFNNNDKLKNIEQEMATITLASAWPFPSKPLNDPRGLIMGENEQIQPIIFDIKTKSSVRASHNAFIVGQMGFGKTFNVKKQLNWLYCNNTKNLYYWPTTRIW
SIO_010081: SDAV_RS11390
subclass of: SO_0000673
so part of: SDAV_RS11390
location: complement(359..817)
location: region:359-817:-1
so has part: feature:359-817:-1:exon

WP_151202552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:359-817:-1:exon

SDAV_RS11395
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11395
so part of: sequence
location: complement(855..1658)
location: region:855-1658:-1
so has part: feature:855-1658:-1:exon
subclass of: SO_0000010

position:855:-1
position: 855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1658:-1
position: 1658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:855-1658:-1:exon

SDAV_RS11395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRSYLKIKNHKIENTNNIQIINNRVAFKDKQALIYKINAVDLTLSTQEERNTPIYDFSNYLRGLNFDFEIIKIDSKLNFDKNKNYLTQTLKQDSLKNSQKHQLTNFLSMSEYLENQDLKLEQNYYLIVFTNNNDKKLELSLLSYNQHLSLTLPTSEEIKKIVDKKIIPTNTAISTLPKTIKETAKYLQLDNNKFVSYLTVNQFPLTVNDMWLSNFSEIENVNISLRVHHLDNMTAFKLLDRAIRRAQDQETKKASEDIEYNLYFTKL
SIO_010081: SDAV_RS11395
subclass of: SO_0000673
so part of: SDAV_RS11395
location: complement(855..1658)
location: region:855-1658:-1
so has part: feature:855-1658:-1:exon

WP_186823507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:855-1658:-1:exon

SDAV_RS11400
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11400
old locus tag: SDAV_003103
so part of: sequence
location: complement(1722..1919)
location: region:1722-1919:-1
so has part: feature:1722-1919:-1:exon
subclass of: SO_0000010

position:1722:-1
position: 1722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1919:-1
position: 1919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1722-1919:-1:exon

SDAV_RS11400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11400
old locus tag: SDAV_003103
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MENNPKIITKKASKVRFTVSNALGGIGWPELFIVFAAVVLITLSLTFLAKLSLLAGLLQLLLLLF
SIO_010081: SDAV_RS11400
subclass of: SO_0000673
so part of: SDAV_RS11400
location: complement(1722..1919)
location: region:1722-1919:-1
so has part: feature:1722-1919:-1:exon

WP_114565678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1722-1919:-1:exon

SDAV_RS11405
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11405
old locus tag: SDAV_003104
so part of: sequence
location: complement(1909..3468)
location: region:1909-3468:-1
so has part: feature:1909-3468:-1:exon
subclass of: SO_0000010

position:1909:-1
position: 1909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3468:-1
position: 3468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1909-3468:-1:exon

SDAV_RS11405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11405
old locus tag: SDAV_003104
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRKRKQDNLTVIKSIKPILKQGLEQFVAYYFKKIFTILAIAMIPLLIIGCIVIAILSAILWFLPNTEPATNIQTFFSNTLNVETVETTGGSNIMGDIIGWAINSFCAILYLIFIKPIVWLLGGMQDVVYFIGGGALSEQLFSMNNISTIYWLLFGIAMAMLIVIIGTKAIAWMYNNRRHEIKAAITNTLIIIIAIPLIPTLFIMANTIMTMIVKLFLQNSPIDTNNIALAIFNSSFMNGVHHFSYIPVSWTFDDSGSFSYIICLVSECFMVYIMFTVCLFLFWRVIELFILLCYSPVVVVMSVTDQGQQFRNWKDMVIGRFISYAFMFITYNIFIMSIAVLGQVATFMPNSLSQPIFILLGIFAFGFAVAKSPQIITSLIGGNTAMSDSIGNLMSFGMATNLAKIGGKFAWKSGKFAARNAVGKPVGLTQGISSAMKSGTPFKEATAGTLFGGFNPNTGGVASAFAGQAMKTKDKVMTNISDYQTYKEQRKQKTNKDSVLQQENTKTTKKEKGDKNNGK
SIO_010081: SDAV_RS11405
subclass of: SO_0000673
so part of: SDAV_RS11405
location: complement(1909..3468)
location: region:1909-3468:-1
so has part: feature:1909-3468:-1:exon

WP_151202553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1909-3468:-1:exon

SDAV_RS11410
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11410
old locus tag: SDAV_003105
so part of: sequence
location: complement(3486..3755)
location: region:3486-3755:-1
so has part: feature:3486-3755:-1:exon
subclass of: SO_0000010

position:3486:-1
position: 3486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3755:-1
position: 3755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3486-3755:-1:exon

SDAV_RS11410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11410
old locus tag: SDAV_003105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMTLLATSGVNDLLNKILGIALPILIAIAVVSAIIMIGVYAIGGKFNADSSNRKETIKKVMWVLICLLIVILASVIVLAFKDTIAPITS
SIO_010081: SDAV_RS11410
subclass of: SO_0000673
so part of: SDAV_RS11410
location: complement(3486..3755)
location: region:3486-3755:-1
so has part: feature:3486-3755:-1:exon

WP_011310422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3486-3755:-1:exon

SDAV_RS11415
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11415
old locus tag: SDAV_003106
so part of: sequence
location: complement(3755..5761)
location: region:3755-5761:-1
so has part: feature:3755-5761:-1:exon
subclass of: SO_0000010

position:5761:-1
position: 5761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3755-5761:-1:exon

SDAV_RS11415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11415
old locus tag: SDAV_003106
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF3688 family protein
translation: MKKLLSILTISTLTASVPAPLLAAVPLTSTLTSKKDVTTGFDINIKDENWKRINKSDYKTEFNKSNKKWYIIIFYSEYMDKNQFTVTKDNISVAGVTYDGIAANGGFYKNPTIYRWDGVGEPNLPEINSNTGQITNWIADKTKFQQGISFALAENNKTAKWSNAGMRLTVDGELNIDIDNKNIEEVYWDGTKQKILDHKVNINVKPETSEKTHKLLIKYDINGTKYTSEEIEVVMAAKINPPATSKQENLSELIKTTDLGNILDNNDNTIFSAITQKNARTVDFSQIKITDKTDTQATLSAIEGSKSYHGSVDVKYNVVSATTVDLKIDVTSTASGIQIDSDYLAQLDSSKMTNKVDTFYYSNGKSTIKIKQPSTGNFITGIVYGCDEKWNKTSQSSNIDPTTGLEIDKGQYGSVDGRYLIELQHKDLPTHTKAIYLQISEKQKIEHYWDTPKGKQFEIWAEDNGEKNIRGYGASQLNNLFAVSKTWKQSLAHLDLKLDNFVVDNIKNVSQDEIDTYKTKMLASVKEQVENYVPDVVENTDYKILVDNLVSGDWTTSNDVKVQAVNGSTKLLSFAIKTIPVQQKEQATPLTSTPDNNKKEGDSKLWIIGVVAGVLAGLGLAYLLFKRFVFDKYIYPKIIARRHNKLVEQIKKEEAEKEAQNNKKGGDE
SIO_010081: SDAV_RS11415
subclass of: SO_0000673
so part of: SDAV_RS11415
location: complement(3755..5761)
location: region:3755-5761:-1
so has part: feature:3755-5761:-1:exon

WP_114565680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3755-5761:-1:exon

SDAV_RS11420
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11420
old locus tag: SDAV_003107
so part of: sequence
location: complement(6072..6377)
location: region:6072-6377:-1
so has part: feature:6072-6377:-1:exon
subclass of: SO_0000010

position:6072:-1
position: 6072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6377:-1
position: 6377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6072-6377:-1:exon

SDAV_RS11420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11420
old locus tag: SDAV_003107
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAAKTSIRRTHQGNQITMKKVDENICLVPYCQENNSIIEIDSPFCIEHSEKFKDFAKNYDGRNQIKNMLRTDIKLSNELIINMISCFCDEEENKYQQLRMN
SIO_010081: SDAV_RS11420
subclass of: SO_0000673
so part of: SDAV_RS11420
location: complement(6072..6377)
location: region:6072-6377:-1
so has part: feature:6072-6377:-1:exon

WP_151202554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6072-6377:-1:exon

SDAV_RS11425
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11425
old locus tag: SDAV_003108
so part of: sequence
location: complement(6329..7102)
location: region:6329-7102:-1
so has part: feature:6329-7102:-1:exon
subclass of: SO_0000010

position:6329:-1
position: 6329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7102:-1
position: 7102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6329-7102:-1:exon

SDAV_RS11425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11425
old locus tag: SDAV_003108
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: AAA family ATPase
translation: MKMISFCNKKGGVGKTTLCKNVAYKLADDNKRVLLIDLDTQASLSYLLQYENIDMSKSLHKIIASDCEIPINKVIQPTKYKNIDIIVGGETLRKTLPIMREIYDNKNWYLIGLQVYKINKDTLDGYDYVLIDYPPTTDDLSLNWLIFSDLIVIPTNCDSTSFKGILDLNNNLDLIITELKRSKPILKIVFNNISDNDNRAKIMKWLNKYNFSKLLSNVEIKTSEIFTTSNNDFISIWENPYYWRQKQAYEELIKEIK
SIO_010081: SDAV_RS11425
subclass of: SO_0000673
so part of: SDAV_RS11425
location: complement(6329..7102)
location: region:6329-7102:-1
so has part: feature:6329-7102:-1:exon

WP_114565682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6329-7102:-1:exon

SDAV_RS11430
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11430
old locus tag: SDAV_003109
so part of: sequence
location: complement(7089..7331)
location: region:7089-7331:-1
so has part: feature:7089-7331:-1:exon
subclass of: SO_0000010

position:7089:-1
position: 7089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7331:-1
position: 7331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7089-7331:-1:exon

SDAV_RS11430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11430
old locus tag: SDAV_003109
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPILDKKDIDIEKKLNKTVSFSDEIKKDKRIKLTPMTCKVNLILKFNELAQQRKWSKTTLMNEILEEYFNRLENNKNEDD
SIO_010081: SDAV_RS11430
subclass of: SO_0000673
so part of: SDAV_RS11430
location: complement(7089..7331)
location: region:7089-7331:-1
so has part: feature:7089-7331:-1:exon

WP_114565683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7089-7331:-1:exon

SDAV_RS11435
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11435
old locus tag: SDAV_003110
so part of: sequence
location: 7624..8100
location: region:7624-8100:1
so has part: feature:7624-8100:1:exon
subclass of: SO_0000010

position:7624:1
position: 7624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8100:1
position: 8100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7624-8100:1:exon

SDAV_RS11435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11435
old locus tag: SDAV_003110
inference: COORDINATES: protein motif:HMM:TIGR00616.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006259 - DNA metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: recombinase RecT
translation: MAKLNKLLKKSDEHSEQILNEIWEEEMKEEKEIEKIKYEIGYKNYIQLALWSGQFLDMSVSDVRVGELVNYDRLKGTSFNWVQNEDEREKLQIIGYVAYFKMVNGFEKTLYMTKEQMENHFMKYSKTYAKNKSFYIAIFDEMAQRIIINILLRKYLIN
SIO_010081: SDAV_RS11435
subclass of: SO_0000673
so part of: SDAV_RS11435
location: 7624..8100
location: region:7624-8100:1
so has part: feature:7624-8100:1:exon

WP_151202555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7624-8100:1:exon

SDAV_RS11440
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11440
old locus tag: SDAV_003111
so part of: sequence
location: 8176..8949
location: region:8176-8949:1
so has part: feature:8176-8949:1:exon
subclass of: SO_0000010

position:8176:1
position: 8176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8949:1
position: 8949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8176-8949:1:exon

SDAV_RS11440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11440
old locus tag: SDAV_003111
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSSEFFLVKYLTDVLDKCSLKLFGYETNEFIEMHFSDIFRIIEENENSISEEKSLEIINKVKNNQFNLLNYFEYIKNLRNYLETNMINEFNKLKESTKTNKLNNLINIENKLNFIVNNLKLSWNKIKNNNLDYFILNKSNLKLLLSLNDINSDDITEIEWKDIISDYMKKTTLRFSDHIKLLRLLQTTAEKYKDEIKLENKFLKEELFKNLNKLCIRHNNEWDEIQQDFKISTNEEYYKVIKKTFQLFLLAMIIIDN
SIO_010081: SDAV_RS11440
subclass of: SO_0000673
so part of: SDAV_RS11440
location: 8176..8949
location: region:8176-8949:1
so has part: feature:8176-8949:1:exon

WP_151202556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8176-8949:1:exon

SDAV_RS11445
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11445
old locus tag: SDAV_003112
so part of: sequence
location: complement(9182..9775)
location: region:9182-9775:-1
so has part: feature:9182-9775:-1:exon
subclass of: SO_0000010

position:9182:-1
position: 9182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9775:-1
position: 9775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9182-9775:-1:exon

SDAV_RS11445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11445
old locus tag: SDAV_003112
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGELEKILLMINRWGYLNIEQVALLTQKSFISAKRILERNLKKGFYKIDQHTRKNIYYLSHKGNTFVGREHKKAIKINCYEMPHQDMLIKWLCSQTDIEHYQTERELKMENGNLNAYPDLIVYKTDGTIQLVEFERTRKTPERFFKKLQGLVEYYKQNYTVHWITPTQTLANWIQNQVNKWQAPHELNTYEILNNKD
SIO_010081: SDAV_RS11445
subclass of: SO_0000673
so part of: SDAV_RS11445
location: complement(9182..9775)
location: region:9182-9775:-1
so has part: feature:9182-9775:-1:exon

WP_114565686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9182-9775:-1:exon

SDAV_RS11450
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11450
old locus tag: SDAV_003113
so part of: sequence
location: complement(10385..11038)
location: region:10385-11038:-1
so has part: feature:10385-11038:-1:exon
subclass of: SO_0000010

position:10385:-1
position: 10385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11038:-1
position: 11038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10385-11038:-1:exon

SDAV_RS11450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11450
old locus tag: SDAV_003113
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MQQLQQTEQLNYHFVEINGFNYKVINQLDEKKHISNFYLPKKCVRQHPTRQDSYKIKIYDKFICVPKIMCFLDKTGKYFLVGLDMYFNYWIYNTRDNNKYRLTGYQAIRDTAIKELHYLTVSARRYEKEQATNPFLSGLTYQQARKQICAESDKLKAEYQSFVKTKYSANKKSLIKNKENNSLVNDYNTLYEKNKGDPPKLSEEELTQLLAELDNLD
SIO_010081: SDAV_RS11450
subclass of: SO_0000673
so part of: SDAV_RS11450
location: complement(10385..11038)
location: region:10385-11038:-1
so has part: feature:10385-11038:-1:exon

WP_114565687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10385-11038:-1:exon

SDAV_RS11455
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11455
old locus tag: SDAV_003114
so part of: sequence
location: complement(11898..13415)
location: region:11898-13415:-1
so has part: feature:11898-13415:-1:exon
subclass of: SO_0000010

position:11898:-1
position: 11898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13415:-1
position: 13415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11898-13415:-1:exon

SDAV_RS11455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11455
old locus tag: SDAV_003114
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: type IV secretion system DNA-binding domain-containing protein
translation: MWKKIINWRDKNISNKIFYWFIFILFIPFILLCIINCASAMIILFLKYRTVDFKYYELAYMDKYSWLISIILFIIAFLFFFWFYVCHKIDNIDSSKTKQQKSNKASDKKFKTLQSKMLALNNKYGIPKNNLTQHTLLVGTTGSGKTTTLMFLVKQLTQIFKQTTIIIDGKGDVDLINKVKQQDPNAFIWEIGGSTEYNPFATKDSVVLSDKIMSLFDFSEPFYRDKAKHYLLILLDVLIKKKIPITLKTITDYFQLGNLRVLIGGIVEPNQIKLSNFEEKEIVGMYSKLDICSMQLNNSLGKNNSLLELITKHKTILFSINSLKYPELAGAVGKIIIQDLKELTTLKPVNQKINIVLDEFNVFASENIVNLINKSRSFNYQCFLSFQTINDLKTNNMNLTDTIYGNVSTVVCHNIKDPNTAEYVASVFGTQETEKLTRQLDFKNNTADMGSVRAVDEFIVHPNDLKTLKTGECYLKTTLPSGKLFIKKIQVDPTCLDGLIQHLNK
SIO_010081: SDAV_RS11455
subclass of: SO_0000673
so part of: SDAV_RS11455
location: complement(11898..13415)
location: region:11898-13415:-1
so has part: feature:11898-13415:-1:exon

WP_114565688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11898-13415:-1:exon

SDAV_RS11460
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11460
old locus tag: SDAV_003115
so part of: sequence
location: complement(13514..13852)
location: region:13514-13852:-1
so has part: feature:13514-13852:-1:exon
subclass of: SO_0000010

position:13514:-1
position: 13514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13852:-1
position: 13852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13514-13852:-1:exon

SDAV_RS11460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11460
old locus tag: SDAV_003115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: METKQNEWVTVNILARRKLKRETEKAVLFSIPKHKGLSVWINKKCIHGSRNGKIFAVGIKKNDEYTIWIYDADSKQHLKSEIWQGKYLINLYQYEWNKMIEAIKINQEALNK
SIO_010081: SDAV_RS11460
subclass of: SO_0000673
so part of: SDAV_RS11460
location: complement(13514..13852)
location: region:13514-13852:-1
so has part: feature:13514-13852:-1:exon

WP_114565689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13514-13852:-1:exon

SDAV_RS11465
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11465
old locus tag: SDAV_003116
so part of: sequence
location: complement(13856..16378)
location: region:13856-16378:-1
so has part: feature:13856-16378:-1:exon
subclass of: SO_0000010

position:13856:-1
position: 13856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16378:-1
position: 16378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13856-16378:-1:exon

SDAV_RS11465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11465
old locus tag: SDAV_003116
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MENNPKIITKKASKVRFTVSNALGGIGWPELFIVFAAVVLITLSLTFLAKLSLLAGVITTVIVAILTIFLIAPNKNGEKLYYVIFVAIAFLFKNKNHKIENTNNIQIINNRVAFKDKQALIYKINAVDLTLSTQEERNTPIYDFSNYLRGLNFDFEIIKIDSKLNFDKNKNYLTQTLKQDSLKNSQKHQLTNFLSMSEYLENQDLKLEQNYYLIVFTNNNDKKLELSLLSYNQHLSLTLPTSEEIKKIVDKKIIPTNTAISTLPKTIKETAKYLQLDNNKFVSYLTVNQFPLTVNDMWLSNFSEIENVNISLRVHHLDNMTAFKLLDRAIRRAQDQETKKASEDIEYNLYLQNFNELLQLIQVGGETLKMVSLVFTCFADSKTGLDQVVSNLKNEMIRNRFTINDLTFRQFTTYKFLLFNNNDKLKNIEQEMATITLASAWPFPSKPLNDPRGLIMGENEQIQPIIFDIKTKSSVRASHNAFIVGQMGFGKTFNVKKQLNWLYCNNTKIYIIDPQREYGSFANYHGGEIIEFGNNPKAKINPLEIFTDNFSEHISLLEQWFKNLYSDLTNIDLAKLQEYIIQLYKNFKITADTNLKKLSRKDYPILTDLYNLVYQKEQDTLLEKMLWKLTKGADGTLFNGVSTLEIKSDLIVFDIYNMAKSKTIANAQMYLLLALLDRVMKKNKEDNLNLPTEQQSWVCIAVDEAHLLINQDNLLALNYLFTLSKTCRKFNGILFILTQSIGDFTQHGENVKRQARGIIEQCTYQFIHHLNSIGLQNYTELLTDNNMINAYEKNVILTPKKGLCLFSINDKRYILQVIATSEEIKAIGTQEDINNLGKET
SIO_010081: SDAV_RS11465
subclass of: SO_0000673
so part of: SDAV_RS11465
location: complement(13856..16378)
location: region:13856-16378:-1
so has part: feature:13856-16378:-1:exon

WP_114565690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13856-16378:-1:exon

SDAV_RS11470
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11470
old locus tag: SDAV_003117
so part of: sequence
location: complement(16368..17927)
location: region:16368-17927:-1
so has part: feature:16368-17927:-1:exon
subclass of: SO_0000010

position:16368:-1
position: 16368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17927:-1
position: 17927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16368-17927:-1:exon

SDAV_RS11470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11470
old locus tag: SDAV_003117
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRKRKQDNLTVIKSIKPILKQGLEQFVAYYFKKIFTILAIAMIPLLIIGCIVIAILSAILWFLPNTEPATNIQTFFSNTLNVETVETTGGSNIMGDIIGWAINSFCAILYLIFIKPIVWLLGGMQDVVYFIGGGALSEQLFSMNNISTIYWLLFGIAMAMLIVIIGTKAIAWMYNNRRHEIKAAITNTLIIIIAIPLIPTLFIMANTIMTMIVKLFLQNSPIDTNNIALAIFNSSFMNGVHHFSYIPVSWTFDDSGSFSYIICLVSECFMVYIMFTVCLFLFWRVIELFILLCYSPVVVVMSVTDQGQQFRNWKDMVIGRFISYAFMFITYNIFIMSIAVLGQVATFMPNSLSQPIFILLGIFAFGFAVAKSPQIITSLIGGNTAMSDSIGNLMSFGMATNLAKIGGKFAWKSGKFAARNAVGKPVGLTQGISSAMKSGTPFKEATAGTLFGGFNPNTGGVASAFAGQAMKTKDKVMTNISDYQTYKEQRKQKTNKDSVLQQENTKTTKKEKGDKNNGK
SIO_010081: SDAV_RS11470
subclass of: SO_0000673
so part of: SDAV_RS11470
location: complement(16368..17927)
location: region:16368-17927:-1
so has part: feature:16368-17927:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16368-17927:-1:exon

SDAV_RS11475
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11475
old locus tag: SDAV_003118
so part of: sequence
location: complement(17945..18214)
location: region:17945-18214:-1
so has part: feature:17945-18214:-1:exon
subclass of: SO_0000010

position:17945:-1
position: 17945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18214:-1
position: 18214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17945-18214:-1:exon

SDAV_RS11475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11475
old locus tag: SDAV_003118
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMTLLATSGVNDLLNKILGIALPILIAIAVVSAIIMIGVYAIGGKFNADSSNRKETIKKVMWVLICLLIVILASVIVLAFKDTIAPITS
SIO_010081: SDAV_RS11475
subclass of: SO_0000673
so part of: SDAV_RS11475
location: complement(17945..18214)
location: region:17945-18214:-1
so has part: feature:17945-18214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17945-18214:-1:exon

SDAV_RS11480
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11480
old locus tag: SDAV_003119
so part of: sequence
location: complement(18214..20220)
location: region:18214-20220:-1
so has part: feature:18214-20220:-1:exon
subclass of: SO_0000010

position:20220:-1
position: 20220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18214-20220:-1:exon

SDAV_RS11480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11480
old locus tag: SDAV_003119
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF3688 family protein
translation: MKKLLSILTISTLTASVPAPLLAAVPLTSTLTSKKDVTTGFDINIKDENWKRINKSDYKTEFNKSNKKWYIIIFYSEYMDKNQFTVTKDNISVAGVTYDGIAANGGFYKNPTIYRWDGVGEPNLPEINSNTGQITNWIADKTKFQQGISFALAENNKTAKWSNAGMRLTVDGELNIDIDNKNIEEVYWDGTKQKILDHKVNINVKPETSEKTHKLLIKYDINGTKYTSEEIEVVMAAKINPPATSKQENLSELIKTTDLGNILDNNDNTIFSAITQKNARTVDFSQIKITDKTDTQATLSAIEGSKSYHGSVDVKYNVVSATTVDLKIDVTSTASGIQIDSDYLAQLDSSKMTNKVDTFYYSNGKSTIKIKQPSTGNFITGIVYGCDEKWNKTSQSSNIDPTTGLEIDKGQYGSVDGRYLIELQHKDLPTHTKAIYLQISEKQKIEHYWDTPKGKQFEIWAEDNGEKNIRGYGASQLNNLFAVSKTWKQSLAHLDLKLDNFVVDNIKNVSQDEIDTYKTKMLASVKEQVENYVPDVVENTDYKILVDNLVSGDWTTSNDVKVQAVNGSTKLLSFAIKTIPVQQKEQATPLTSTPDNNKKEGDSKLWIIGVVAGVLAGLGLAYLLFKRFVFDKYIYPKIIARRHNKLVEQIKKEEAEKEAQNNKKGGDE
SIO_010081: SDAV_RS11480
subclass of: SO_0000673
so part of: SDAV_RS11480
location: complement(18214..20220)
location: region:18214-20220:-1
so has part: feature:18214-20220:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18214-20220:-1:exon

SDAV_RS11485
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11485
old locus tag: SDAV_003120
so part of: sequence
location: complement(20531..20836)
location: region:20531-20836:-1
so has part: feature:20531-20836:-1:exon
subclass of: SO_0000010

position:20531:-1
position: 20531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20836:-1
position: 20836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20531-20836:-1:exon

SDAV_RS11485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11485
old locus tag: SDAV_003120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAAKTSIRRTHQGNQITMKKVDENICLVPYCQENNSIIEIDSPFCIEHSEKFKDFAKNYDGRNQIKNMLRTDIKLSNELIINMISCFCDEEENKYQQLRMN
SIO_010081: SDAV_RS11485
subclass of: SO_0000673
so part of: SDAV_RS11485
location: complement(20531..20836)
location: region:20531-20836:-1
so has part: feature:20531-20836:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20531-20836:-1:exon

SDAV_RS11490
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11490
old locus tag: SDAV_003121
so part of: sequence
location: complement(20788..21561)
location: region:20788-21561:-1
so has part: feature:20788-21561:-1:exon
subclass of: SO_0000010

position:20788:-1
position: 20788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21561:-1
position: 21561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20788-21561:-1:exon

SDAV_RS11490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11490
old locus tag: SDAV_003121
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: AAA family ATPase
translation: MKMISFCNKKGGVGKTTLCKNVAYKLADDNKRVLLIDLDTQASLSYLLQYENIDMSKSLHKIIASDCEIPINKVIQPTKYKNIDIIVGGETLRKTLPIMREIYDNKNWYLIGLQVYKINKDTLDGYDYVLIDYPPTTDDLSLNWLIFSDLIVIPTNCDSTSFKGILDLNNNLDLIITELKRSKPILKIVFNNISDNDNRAKIMKWLNKYNFSKLLSNVEIKTSEIFTTSNNDFISIWENPYYWRQKQAYEELIKEIK
SIO_010081: SDAV_RS11490
subclass of: SO_0000673
so part of: SDAV_RS11490
location: complement(20788..21561)
location: region:20788-21561:-1
so has part: feature:20788-21561:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20788-21561:-1:exon

SDAV_RS11495
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11495
old locus tag: SDAV_003122
so part of: sequence
location: complement(21548..21790)
location: region:21548-21790:-1
so has part: feature:21548-21790:-1:exon
subclass of: SO_0000010

position:21548:-1
position: 21548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21790:-1
position: 21790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21548-21790:-1:exon

SDAV_RS11495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11495
old locus tag: SDAV_003122
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPILDKKDIDIEKKLNKTVSFSDEIKKDKRIKLTPMTCKVNLILKFNELAQQRKWSKTTLMNEILEEYFNRLENNKNEDD
SIO_010081: SDAV_RS11495
subclass of: SO_0000673
so part of: SDAV_RS11495
location: complement(21548..21790)
location: region:21548-21790:-1
so has part: feature:21548-21790:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21548-21790:-1:exon

SDAV_RS11500
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11500
old locus tag: SDAV_003123
so part of: sequence
location: 22083..22559
location: region:22083-22559:1
so has part: feature:22083-22559:1:exon
subclass of: SO_0000010

position:22083:1
position: 22083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22559:1
position: 22559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22083-22559:1:exon

SDAV_RS11500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11500
old locus tag: SDAV_003123
inference: COORDINATES: protein motif:HMM:TIGR00616.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006259 - DNA metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: recombinase RecT
translation: MAKLNKLLKKSDEHSEQILNEIWEEEMKEEKEIEKIKYEIGYKNYIQLALWSGQFLDMSVSDVRVGELVNYDRLKGTSFNWVQNEDEREKLQIIGYVAYFKMVNGFEKTLYMTKEQMENHFMKYSKTYAKNKSFYIAIFDEMAQRIIINILLRKYLIN
SIO_010081: SDAV_RS11500
subclass of: SO_0000673
so part of: SDAV_RS11500
location: 22083..22559
location: region:22083-22559:1
so has part: feature:22083-22559:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22083-22559:1:exon

SDAV_RS11505
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11505
old locus tag: SDAV_003124
so part of: sequence
location: 22635..23408
location: region:22635-23408:1
so has part: feature:22635-23408:1:exon
subclass of: SO_0000010

position:22635:1
position: 22635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23408:1
position: 23408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22635-23408:1:exon

SDAV_RS11505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11505
old locus tag: SDAV_003124
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSSEFFLVKYLTDVLDKCSLKLFGYETNEFIEMHFSDIFRIIEENENSISEEKSLEIINKVKNNQFNLLNYFEYIKNLRNYLETNMINEFNKLKESTKTNKLNNLINIENKLNFIVNNLKLSWNKIKNNNLDYFILNKSNLKLLLSLNDINSDDITEIEWKDIISDYMKKTTLRFSDHIKLLRLLQTTAEKYKDEIKLENKFLKEELFKNLNKLCIRHNNEWDEIQQDFKISTNEEYYKVIKKTFQLFLLAMIIIDN
SIO_010081: SDAV_RS11505
subclass of: SO_0000673
so part of: SDAV_RS11505
location: 22635..23408
location: region:22635-23408:1
so has part: feature:22635-23408:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22635-23408:1:exon

SDAV_RS11510
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS11510
so part of: sequence
location: complement(23641..24030)
location: region:23641-24030:-1
so has part: feature:23641-24030:-1:exon
subclass of: SO_0000010

position:23641:-1
position: 23641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24030:-1
position: 24030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23641-24030:-1:exon

SDAV_RS11510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS11510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNTKKAIKINCYEMPHQDMLIKWLCSQTDIEHYQTERELKMENGNLNAYPDLIVYKTDGTIQLVEFERTRKTPERFFKKLQGLVEYYKQNYTVHWITPTQTLANWIQNQVNKWQAPHELNTYEILNNKD
SIO_010081: SDAV_RS11510
subclass of: SO_0000673
so part of: SDAV_RS11510
location: complement(23641..24030)
location: region:23641-24030:-1
so has part: feature:23641-24030:-1:exon

WP_151202557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23641-24030:-1:exon

SDAV_RS12475
type: Gene
subclass of: SO_0000704
RO_0002162: 1276259
locus tag: SDAV_RS12475
so part of: sequence
location: complement(24089..24232)
location: region:24089-24232:-1
so has part: feature:24089-24232:-1:exon
subclass of: SO_0000010

position:24089:-1
position: 24089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24232:-1
position: 24232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24089-24232:-1:exon

SDAV_RS12475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1276259
locus tag: SDAV_RS12475
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGELEKILLMINRWGYLNIEQVALLTQKSFISAKRILERNLKKVFIK
SIO_010081: SDAV_RS12475
subclass of: SO_0000673
so part of: SDAV_RS12475
location: complement(24089..24232)
location: region:24089-24232:-1
so has part: feature:24089-24232:-1:exon

WP_186823506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24089-24232:-1:exon