Spiroplasma phoeniceum P40 plasmid pSPh535, complete sequence.
Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
Complete Genome Sequence of Spiroplasma phoeniceum
Submitted (16-AUG-2018) United States Department of Agriculture, Beltsville Agricultural Research Center, 10300 Baltimore Ave., Beltsville, MD 20705, USA
Submitted (17-JUL-2018) United States Department of Agriculture, Beltsville Agricultural Research Center, 10300 Baltimore Ave., Beltsville, MD 20705, United States of America
REFSEQ INFORMATION: The reference sequence is identical to\nCP031089.1.\nBacteria and source DNA available from Gail Gasparich - Salem\nUniversity.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nExpected Final Version :: yes\nGenome Coverage :: 110.5x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 01:24:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,565\nCDSs (total) :: 2,516\nGenes (coding) :: 2,417\nCDSs (with protein) :: 2,417\nGenes (RNA) :: 49\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 99\nCDSs (without protein) :: 99\nPseudo Genes (ambiguous residues) :: 0 of 99\nPseudo Genes (frameshifted) :: 44 of 99\nPseudo Genes (incomplete) :: 54 of 99\nPseudo Genes (internal stop) :: 33 of 99\nPseudo Genes (multiple problems) :: 30 of 99\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011271320.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF038029.1
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028785.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028771.1
COORDINATES: protein motif:HMM:NF013793.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025001.2