Dermacoccus nishinomiyaensis strain M25 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Dermacoccaceae; Dermacoccus.
Genome Sequencing of Dermacoccus nishinomiyaensis
Submitted (08-JUL-2014) Department of Genetics and Molecular BIology, Faculty of Science, University of Malaya, Lingkaran Budi, Kuala Lumpur, Kuala Lumpur 50603, Malaysia
REFSEQ INFORMATION: The reference sequence is identical to\nCP008890.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-NOV-2013\nAssembly Method :: HGAP v. unknown\nGenome Coverage :: 309.98x\nSequencing Technology :: Pacific Biosciences RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 11:23:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,849\nCDSs (total) :: 2,787\nGenes (coding) :: 2,735\nCDSs (with protein) :: 2,735\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 16 of 52\nPseudo Genes (incomplete) :: 37 of 52\nPseudo Genes (internal stop) :: 8 of 52\nPseudo Genes (multiple problems) :: 7 of 52\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF041492.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006904191.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_006947548.1
COORDINATES: similar to AA sequence:RefSeq:WP_012085553.1
COORDINATES: similar to AA sequence:RefSeq:WP_019310283.1
COORDINATES: similar to AA sequence:RefSeq:WP_019309001.1
COORDINATES: similar to AA sequence:RefSeq:WP_012801632.1
COORDINATES: similar to AA sequence:RefSeq:WP_019135663.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558200.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018832596.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_006946341.1
COORDINATES: similar to AA sequence:RefSeq:WP_006945528.1
COORDINATES: similar to AA sequence:RefSeq:WP_006898364.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020388832.1
COORDINATES: protein motif:HMM:NF025080.2
COORDINATES: similar to AA sequence:RefSeq:WP_016464556.1
COORDINATES: similar to AA sequence:RefSeq:WP_010080128.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017586526.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006947465.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611083.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612250.1
COORDINATES: similar to AA sequence:RefSeq:WP_006943971.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558196.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941055.1
COORDINATES: similar to AA sequence:RefSeq:WP_006945791.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
type ISP restriction/modification enzyme
COORDINATES: protein motif:HMM:NF013618.2
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF025001.2