Micrococcus luteus strain CW.Ay plasmid pCW.Ay, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Micrococcus.
Complete Genome Sequence of Micrococcus luteus Strain CW.Ay, Isolated from Indoor Air in a Hong Kong School
Microbiol Resour Announc 11 (2), e0119421 (2022)
Submitted (29-AUG-2021) Shuyuan Molecular Biology Laboratory, The Independent Schools Foundation Academy, 1 Kong Sin Wan Road, Pokfulam, Hong Kong HK SAR, Hong Kong
REFSEQ INFORMATION: The reference sequence is identical to\nCP082332.1.\nBacteria and source DNA available from Dr. Simon D. J. Griffin,\nShuyuan Molecular Biology Laboratory, ISF Academy, 1 Kong Sin Road,\nPokfulam, Hong Kong.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2021\nAssembly Method :: Unicycler v. v0.4.8-beta\nAssembly Name :: Charlotte_6_CW.Ay\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 194.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 22:10:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,351\nCDSs (total) :: 2,294\nGenes (coding) :: 2,257\nCDSs (with protein) :: 2,257\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 22 of 37\nPseudo Genes (incomplete) :: 23 of 37\nPseudo Genes (internal stop) :: 4 of 37\nPseudo Genes (multiple problems) :: 8 of 37\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF037930.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020535.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010080128.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003038675.1
COORDINATES: similar to AA sequence:RefSeq:WP_000088944.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012397806.1
COORDINATES: similar to AA sequence:RefSeq:WP_002549366.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003034564.1
COORDINATES: similar to AA sequence:RefSeq:WP_002857207.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002857208.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004004577.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_012802280.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013416280.1
COORDINATES: protein motif:HMM:NF025343.2
COORDINATES: similar to AA sequence:RefSeq:WP_017543107.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611786.1
COORDINATES: similar to AA sequence:RefSeq:WP_009739200.1
COORDINATES: similar to AA sequence:RefSeq:WP_017488145.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF013231.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020250.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF015649.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: protein motif:HMM:NF012675.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017831573.1
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_003797354.1
COORDINATES: similar to AA sequence:RefSeq:WP_013732969.1
COORDINATES: similar to AA sequence:RefSeq:WP_012398383.1
COORDINATES: protein motif:HMM:NF014177.2
COORDINATES: protein motif:HMM:NF040570.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF024359.2
COORDINATES: protein motif:HMM:NF025200.2