Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR15, complete sequence.
type: Entry
definition: Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR15, complete sequence.
sequence version: NC_022607.1
sequence date: 2023-02-05
sequence: sequence
division: CON
label: NC_022607.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604179
keyword: RefSeq
source: Carnobacterium inhibens subsp. gilichinskyi
organism: Carnobacterium inhibens subsp. gilichinskyi
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.
reference: 1
references: 24285647
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP006814.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Celera Assembler (CA) v. 7.0\nCoverage :: 103x\nSequencing Technology :: Pacific Biosciences\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:43:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,400\nCDSs (total) :: 2,297\nGenes (coding) :: 2,266\nCDSs (with protein) :: 2,266\nGenes (RNA) :: 103\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 10 of 31\nPseudo Genes (incomplete) :: 15 of 31\nPseudo Genes (internal stop) :: 12 of 31\nPseudo Genes (multiple problems) :: 5 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15475
topology: circular
so has quality: SO_0000988
location: 1..15475
location: region:1-15475:1
RO_0002162: 1266845

NC_022607
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604179
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)
author: Leonard, M.T.
author: Panayotova, N.
author: Farmerie, W.G.
author: Triplett, E.W.
author: Nicholson, W.L.
journal: Genome Announc 1 (6), e00985-13 (2013)
pubmed: 24285647
comments: Publication Status: Online-Only

24285647
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Nicholson, W.L.
author: Leonard, M.T.
author: Panayotova, N.
author: Farmerie, W.G.
author: Triplett, E.W.
journal: Submitted (21-OCT-2013) Microbiology & Cell Science, University of Florida, 1355 Museum Road, Gainesville, FL 32611, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15475:1
position: 15475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15475:1:source
so part of: sequence
organism: Carnobacterium inhibens subsp. gilichinskyi
mol type: genomic DNA
strain: WN1359
isolation source: Siberian permafrost
sub species: gilichinskyi
culture collection: DSM:27470
type material: type strain of Carnobacterium inhibens subsp. gilichinskyi
plasmid: pWNCR15

1266845
type: Taxonomy
SIO_000068: taxonomy

Q783_RS11345
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11345
old locus tag: Q783_11505
so part of: sequence
location: complement(join(14108..15475,1..552))
location: region:1-15475:-1
so has part: feature:1-552:-1:exon
so has part: feature:14108-15475:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15475:-1
position: 15475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-552:-1:exon

position:552:-1
position: 552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14108-15475:-1:exon

position:14108:-1
position: 14108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Q783_RS11345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11345
old locus tag: Q783_11505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017175150.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MKEIQEQHSHENNSHDHEHDHGKMPIILYFIGLALSLIALFLNGETSLLQNSLFSIASISAGYHVIILEGIGETIENSKIQHKFTPNSHILMGIAAIGASLIGSFWEGTLLVLIFSGAHFLEDYAEGRSKREITKLLEMNPTTARLIMLDGNTTIVDVKELKVGDQLQVLNGDQVPIDGVIVSGSTSIDESSINGESIPKEKTQGDGVFGSTINGTGTFTMEVTKETNDTVFSKILQLVNQNQENQTKASSIIQKFEPKYVKFVLIAIPLVILIAPLLFDLTWSQSIYRGLVLLVAASPCALAAATVSVTLSATSNLAKRGVLSKGSAYLSQLADIQAIAFDKTGTLTKGKPEVTNYYFSDSVDEKNIIDIVVALEKESNHPLASAILNKFEPKNKLAIKVENQIGRGLIGDYNGKTYRIGKPTSFEAVSDDYTRLNKEWASEGNTVVYVSENEKVIGLIALMDIPSENAKATIEYFKKCGVHTTLITGDSEMTGQAVGKQLGVDQVIANVMPEDKSNIINEQKERYGITAMVGDGVNDAPALVKADVGIAMGEGTDVAVDVSDLVLMKNDLSKLVKAHKISLKMNRVIWQNIIFSMLVVAFLIIVSLLGLTDIAISVIVHEGSTLVVILNGLRLLKSK
SIO_010081: Q783_RS11345
subclass of: SO_0000673
so part of: Q783_RS11345
location: complement(join(14108..15475,1..552))
location: region:1-15475:-1
so has part: feature:1-552:-1:exon
so has part: feature:14108-15475:-1:exon

WP_023179884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-552:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14108-15475:-1:exon

Q783_RS11270
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11270
old locus tag: Q783_11510
so part of: sequence
location: 804..1118
location: region:804-1118:1
so has part: feature:804-1118:1:exon
subclass of: SO_0000010

position:804:1
position: 804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1118:1
position: 1118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:804-1118:1:exon

Q783_RS11270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11270
old locus tag: Q783_11510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002316685.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MKPSSTSPLTNESIQEVSKIFKIISDPTRLSILFLLQKEELSVGNIAQSLSMEQSAISHQLKTLKSSRLVKSKRVGKKMIYSLDDLHIFSILEQVLTHIKEQEQ
SIO_010081: Q783_RS11270
subclass of: SO_0000673
so part of: Q783_RS11270
location: 804..1118
location: region:804-1118:1
so has part: feature:804-1118:1:exon

WP_023179886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:804-1118:1:exon

Q783_RS11275
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11275
old locus tag: Q783_11515
so part of: sequence
location: 1148..2050
location: region:1148-2050:1
so has part: feature:1148-2050:1:exon
subclass of: SO_0000010

position:1148:1
position: 1148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2050:1
position: 2050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148-2050:1:exon

Q783_RS11275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11275
old locus tag: Q783_11515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002342451.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation diffusion facilitator family transporter
translation: MSKNDKNQSQIRKGKKKIKITFFINLIFSITEFVFGFIFNSVSIMSDAIHDLGDSISIGFAWFFQGYSEKRKDERYTFGYERFSLLGALITSVVLISGSLLMIYRSSPRLFEPQPVNYNGMFWLSIVAIIFNGYAAWILSKGSSKNENMLNLHMLEDVLGWIGVLVVSILMNFTEAYRLDPILSILIALYILYKTLPEFFSTMKILLNGSPENVDVEKVADSINNIPDVKALSHLHIWSLDGEENALIVTVLIDSTKAKKIQKIKEEISEIAHEFDVKKHITIEVAVSTDELEKGYSHST
SIO_010081: Q783_RS11275
subclass of: SO_0000673
so part of: Q783_RS11275
location: 1148..2050
location: region:1148-2050:1
so has part: feature:1148-2050:1:exon

WP_023179888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148-2050:1:exon

Q783_RS11280
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11280
old locus tag: Q783_11520
so part of: sequence
location: complement(2296..4440)
location: region:2296-4440:-1
so has part: feature:2296-4440:-1:exon
subclass of: SO_0000010

position:2296:-1
position: 2296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4440:-1
position: 4440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2296-4440:-1:exon

Q783_RS11280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11280
old locus tag: Q783_11520
EC number: 2.7.8.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010054345.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LTA synthase family protein
translation: MLQLKDFLSERIGFFIFAVILFWLKTYLVYQVEFELGVEGFFQEFILFINPIATTVFLFSITLYFTKSKKAYGALFVVYFLTSLLIYSNVLYYREFSDFLTASTIIGAGNVSNGIGASALALLRPQDILYWLDFFILLFMAYSKRSPIQMNPRPMLNQYAVAATTLGVILFSVNLVLAEINRPQLLARTFDRNYIVKYLGVNFFTAFDGYQTAQNNQMKASADESDMENVLSYVEDHYAEPNSDYYGVAEGKNVIYLQLESFQQFLIDYQLEDENGELHEVTPFINSLFNNQDSYSFENFYNQVGQGKTADSEMLVESSLFGSPQGGAFSKYGTSNTFQSASQILRSEAGYTSAMFHGNTGSFWNRDNTYKSFGIDYFFDDESYTFSEENTLEYGMKDKIFFQESVQYLEQLPQPFYSKFITVSNHFPYPLDEANVDFPTGKTGDDTIDNYFVTARYLDQAVEEFFNYLKDSGLYKDSIIVLYGDHYGISNARNESLAPLLGENPEEWNGYNNATMQEVPAIFHVPDAGNGQVFDTFGGQVDMLPTLLHLLGIETKDYVLMGTDLLSEEHDETVAFRNGDIISPKYTVDGSVIYDTKTGEQILEPSQEVLDEVEQLKTAANFQLSTSDSILQSDLLRFYTPEGLLQDDPADYDYQNQLEKLRQVNEQLGEESTSLYSRNDQQSTIPLYKTNAPELVDETSDGLSNSQIIVEPIE
SIO_010081: Q783_RS11280
subclass of: SO_0000673
so part of: Q783_RS11280
location: complement(2296..4440)
location: region:2296-4440:-1
so has part: feature:2296-4440:-1:exon

WP_023179890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2296-4440:-1:exon

Q783_RS11285
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11285
pseudo: true
so part of: sequence
location: complement(5001..5815)
location: region:5001-5815:-1
so has part: feature:5001-5815:-1:exon
subclass of: SO_0000010

position:5001:-1
position: 5001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5815:-1
position: 5815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5001-5815:-1:exon

Q783_RS11285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015735029.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ZIP family metal transporter
SIO_010081: Q783_RS11285
subclass of: SO_0000673
so part of: Q783_RS11285
location: complement(5001..5815)
location: region:5001-5815:-1
so has part: feature:5001-5815:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5001-5815:-1:exon

Q783_RS11290
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11290
old locus tag: Q783_11540
pseudo: true
so part of: sequence
location: complement(6049..>6462)
location: region:6049-6462:-1
so has part: feature:6049-6462:-1:exon
subclass of: SO_0000010

position:6049:-1
position: 6049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6462:-1
position: 6462
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6049-6462:-1:exon

Q783_RS11290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11290
old locus tag: Q783_11540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019392199.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: HAD-IC family P-type ATPase
SIO_010081: Q783_RS11290
subclass of: SO_0000673
so part of: Q783_RS11290
location: complement(6049..>6462)
location: region:6049-6462:-1
so has part: feature:6049-6462:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6049-6462:-1:exon

Q783_RS11295
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11295
old locus tag: Q783_11545
so part of: sequence
location: 6691..7056
location: region:6691-7056:1
so has part: feature:6691-7056:1:exon
subclass of: SO_0000010

position:6691:1
position: 6691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7056:1
position: 7056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6691-7056:1:exon

Q783_RS11295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11295
old locus tag: Q783_11545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007156364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKKYNFDVYEKENGEAPFLEYLDSLDVKSRAKILRAITIVEDFGVHSPPGYIDHLDDGIYELRVKFSSNIFRCLYFHFSNNKYIITHGFTKKTQKTPSREITKSKEYRKDYLERKGDKDEK
SIO_010081: Q783_RS11295
subclass of: SO_0000673
so part of: Q783_RS11295
location: 6691..7056
location: region:6691-7056:1
so has part: feature:6691-7056:1:exon

WP_023179897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6691-7056:1:exon

Q783_RS11300
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11300
old locus tag: Q783_11550
so part of: sequence
location: 7046..7324
location: region:7046-7324:1
so has part: feature:7046-7324:1:exon
subclass of: SO_0000010

position:7046:1
position: 7046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7324:1
position: 7324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7046-7324:1:exon

Q783_RS11300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11300
old locus tag: Q783_11550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003141237.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKNKLKRYFDTQMEAPEFAEAWKETEASYQAANILLRIREEKQLTQSELATLTGKKQSYISRVEKGTQNISVQTLSDIVESVGGKLKMEVVV
SIO_010081: Q783_RS11300
subclass of: SO_0000673
so part of: Q783_RS11300
location: 7046..7324
location: region:7046-7324:1
so has part: feature:7046-7324:1:exon

WP_023179899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7046-7324:1:exon

Q783_RS11305
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11305
old locus tag: Q783_11555
so part of: sequence
location: 8219..8572
location: region:8219-8572:1
so has part: feature:8219-8572:1:exon
subclass of: SO_0000010

position:8219:1
position: 8219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8572:1
position: 8572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8219-8572:1:exon

Q783_RS11305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11305
old locus tag: Q783_11555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209755.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEQKKENRREERQVKFRVNEAEFEKLSYLAEQQGMSVPNFVKSKAQGTRLRNPKVEIEGAKEIARQLRYYNSNLNQLVKWINTNKTLYEPTELKAMEQQLSGIQEGVKGLWEQLSR
SIO_010081: Q783_RS11305
subclass of: SO_0000673
so part of: Q783_RS11305
location: 8219..8572
location: region:8219-8572:1
so has part: feature:8219-8572:1:exon

WP_023179900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8219-8572:1:exon

Q783_RS11310
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11310
old locus tag: Q783_11560
so part of: sequence
location: 8551..9519
location: region:8551-9519:1
so has part: feature:8551-9519:1:exon
subclass of: SO_0000010

position:8551:1
position: 8551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9519:1
position: 9519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8551-9519:1:exon

Q783_RS11310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11310
old locus tag: Q783_11560
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MGAIIKIASATKNGSATVNYIARQGKIDVTLTSAHLTPLDYQAAREQMRQTRDLMGKTKGRQGYHLVQSFDATDQLTPVKAHQFGQEFMSELSKMYPDHEIYMATHTDTDHPHNHFMINAVNSETGAKMAINPPDIYEMHEINNDISKKHDLVELTKAKNKVYPTEIAAYTQTGKQYERDLVKEKIYHARDQAHSYPEFEHLLSESDVTLTSEIGKRGQTIRQKYVTHDSEGKQWTFTASRLGEDFKKEPITHAIMEHQRKRDKQQSDREQLERSNTERLRGLTASVREVADEVRTERRTHESTHKPPQNSPNVNRDFGPER
SIO_010081: Q783_RS11310
subclass of: SO_0000673
so part of: Q783_RS11310
location: 8551..9519
location: region:8551-9519:1
so has part: feature:8551-9519:1:exon

WP_023179902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8551-9519:1:exon

Q783_RS11315
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11315
old locus tag: Q783_11565
so part of: sequence
location: 9560..9847
location: region:9560-9847:1
so has part: feature:9560-9847:1:exon
subclass of: SO_0000010

position:9560:1
position: 9560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9847:1
position: 9847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9560-9847:1:exon

Q783_RS11315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11315
old locus tag: Q783_11565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEQFQDLLTENEQWKQQTAVDLKDYSPEKMEQKLDKIVHQHLGNYQEKLDTVLQQADQQAKKERRTDWIERISILGIGAVTLLAIYGMFSFFMGM
SIO_010081: Q783_RS11315
subclass of: SO_0000673
so part of: Q783_RS11315
location: 9560..9847
location: region:9560-9847:1
so has part: feature:9560-9847:1:exon

WP_023179903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9560-9847:1:exon

Q783_RS11320
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11320
old locus tag: Q783_11570
so part of: sequence
location: 9851..10372
location: region:9851-10372:1
so has part: feature:9851-10372:1:exon
subclass of: SO_0000010

position:9851:1
position: 9851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10372:1
position: 10372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9851-10372:1:exon

Q783_RS11320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11320
old locus tag: Q783_11570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGLFFMKLMWRILPVLSVLVVMGCSYLIWRVKLYQWWNSGHLKRVSLVSLTSLVICFSVLLLLGYSTQSKLPFGSKIHEISAQQQTVKKQKQALEAEKVANEEKEDQIKLQLEAALDLAHNELNIVVINDSVSTLITEEWFSDNQQLIDQLSDVTDREDYMNRFESVREAFLN
SIO_010081: Q783_RS11320
subclass of: SO_0000673
so part of: Q783_RS11320
location: 9851..10372
location: region:9851-10372:1
so has part: feature:9851-10372:1:exon

WP_023179905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9851-10372:1:exon

Q783_RS11325
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11325
old locus tag: Q783_11575
so part of: sequence
location: 10796..11584
location: region:10796-11584:1
so has part: feature:10796-11584:1:exon
subclass of: SO_0000010

position:10796:1
position: 10796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11584:1
position: 11584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10796-11584:1:exon

Q783_RS11325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11325
old locus tag: Q783_11575
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MDNTIKVTSDVQDMSEGVIELSKEYTVAKDNKLVQKAKIDLSEKELKLIDWLISKIKPDDKELLQVNTSISEINTVLGFGSGGRNIKQTKEALLNLSNKGFWIESEDNSGIEITRWIDEVSLKYNGKAILKLHSKLAPYLLQLAEKGNYTSYYLRTIISLKSKYSLLLYQLAKSGLHYGVIGGTVEEIQEYFGHKDLSWGTFNGRYLKKAIEEVNSKTDLHIDMLLGKNGRKIVRVEFRITKKIRKEVSGKIKVPMHNWLDT
SIO_010081: Q783_RS11325
subclass of: SO_0000673
so part of: Q783_RS11325
location: 10796..11584
location: region:10796-11584:1
so has part: feature:10796-11584:1:exon

WP_023179907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10796-11584:1:exon

Q783_RS11330
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11330
old locus tag: Q783_11580
so part of: sequence
location: 11661..12236
location: region:11661-12236:1
so has part: feature:11661-12236:1:exon
subclass of: SO_0000010

position:11661:1
position: 11661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12236:1
position: 12236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11661-12236:1:exon

Q783_RS11330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11330
old locus tag: Q783_11580
inference: COORDINATES: protein motif:HMM:NF024803.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MKEIQAIEYISTKLVCEKLKIQPSTLRKYASMLDEKAKTEFYFTRDDSNNRVYTKEDIAVLQRIIELKNRPGYTLEAAINEVVGLSYNSDIQDAIAVNEENDNYLKALHSFVAQQNKYFEDYQSVLQKKDEQIDRLESLVSSLIENNINDMSVSTEDSTTNFEEPKEFEKMSSEESMTISTPKKKKWWNFK
SIO_010081: Q783_RS11330
subclass of: SO_0000673
so part of: Q783_RS11330
location: 11661..12236
location: region:11661-12236:1
so has part: feature:11661-12236:1:exon

WP_023179909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11661-12236:1:exon

Q783_RS11335
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11335
old locus tag: Q783_11585
so part of: sequence
location: complement(12698..13348)
location: region:12698-13348:-1
so has part: feature:12698-13348:-1:exon
subclass of: SO_0000010

position:12698:-1
position: 12698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13348:-1
position: 13348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12698-13348:-1:exon

Q783_RS11335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11335
old locus tag: Q783_11585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017149555.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSLICLEGASAVGKTTTANEIARITNTYVIPEVNLLFERPKTESKTWYLERQIERWQIAQEKLKTYNNVILDGDIFQPLSYNWCFDFNMYNQSLNFISEFFRSEIKDGKVKFPDKYFYLYTNHENLKYRKENDSTRKRSNFERHLEIVEPHQRYYKSLNYFIPDYVQLIAANSIQENIISITDNISPSHVNFDSVELLDNVTNWLANNNAKNLIKF
SIO_010081: Q783_RS11335
subclass of: SO_0000673
so part of: Q783_RS11335
location: complement(12698..13348)
location: region:12698-13348:-1
so has part: feature:12698-13348:-1:exon

WP_043946007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12698-13348:-1:exon

Q783_RS11340
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11340
old locus tag: Q783_11590
so part of: sequence
location: complement(13417..13968)
location: region:13417-13968:-1
so has part: feature:13417-13968:-1:exon
subclass of: SO_0000010

position:13417:-1
position: 13417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13968:-1
position: 13968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13417-13968:-1:exon

Q783_RS11340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11340
old locus tag: Q783_11590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005876259.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MSYNVQPLRTQQEINDFLFCLRRNKNAERDVFLFLIGINSGLRMSDIVKLKKKDVISSKNPRIVEQKTGKTRILYLSSLQELIQDYTKDLEPEDYLFPSTKGGHLEVNTVYQMFQKVAALLDRDDIGTHTLRKTFGYHYYKKTKDVATLMEIFGHSSEKITKRYIGINEDEISETLLNFRLGF
SIO_010081: Q783_RS11340
subclass of: SO_0000673
so part of: Q783_RS11340
location: complement(13417..13968)
location: region:13417-13968:-1
so has part: feature:13417-13968:-1:exon

WP_023179913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13417-13968:-1:exon