Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence.
Carnobacterium inhibens subsp. gilichinskyi
Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.
Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)
Submitted (21-OCT-2013) Microbiology & Cell Science, University of Florida, 1355 Museum Road, Gainesville, FL 32611, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006816.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Celera Assembler (CA) v. 7.0\nCoverage :: 103x\nSequencing Technology :: Pacific Biosciences\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:43:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,400\nCDSs (total) :: 2,297\nGenes (coding) :: 2,266\nCDSs (with protein) :: 2,266\nGenes (RNA) :: 103\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 10 of 31\nPseudo Genes (incomplete) :: 15 of 31\nPseudo Genes (internal stop) :: 12 of 31\nPseudo Genes (multiple problems) :: 5 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Carnobacterium inhibens subsp. gilichinskyi
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007723195.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
CagC family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723199.1
TrsD/TraD family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723203.1
COORDINATES: protein motif:HMM:NF025081.2
COORDINATES: similar to AA sequence:RefSeq:WP_007723213.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723224.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723226.1
GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
CopY/TcrY family copper transport repressor
COORDINATES: similar to AA sequence:RefSeq:WP_007723229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004262487.1
COORDINATES: similar to AA sequence:RefSeq:WP_005237621.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723236.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003143290.1
COORDINATES: similar to AA sequence:RefSeq:WP_003142434.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723264.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_016177568.1
COORDINATES: similar to AA sequence:RefSeq:WP_014334285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723452.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007723271.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007723273.1
COORDINATES: similar to AA sequence:RefSeq:WP_010650466.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010358620.1
COORDINATES: similar to AA sequence:RefSeq:WP_013709645.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:TIGR00410.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013404741.1
COORDINATES: protein motif:HMM:NF013126.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009558652.1
GO:0008801 - beta-phosphoglucomutase activity [Evidence IEA]
GO:0046352 - disaccharide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003535113.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535107.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723329.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723331.1
COORDINATES: similar to AA sequence:RefSeq:WP_003759241.1
COORDINATES: similar to AA sequence:RefSeq:WP_013709695.1
COORDINATES: similar to AA sequence:RefSeq:WP_013669101.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016290072.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003706982.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_011476586.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002293763.1
COORDINATES: similar to AA sequence:RefSeq:WP_002371076.1
COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016897252.1
COORDINATES: similar to AA sequence:RefSeq:WP_005876259.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025063.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002834012.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335299.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_003242325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723180.1