Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR47, complete sequence.
Carnobacterium inhibens subsp. gilichinskyi
Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.
Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)
Submitted (21-OCT-2013) Microbiology & Cell Science, University of Florida, 1355 Museum Road, Gainesville, FL 32611, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006815.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Celera Assembler (CA) v. 7.0\nCoverage :: 103x\nSequencing Technology :: Pacific Biosciences\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:43:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,400\nCDSs (total) :: 2,297\nGenes (coding) :: 2,266\nCDSs (with protein) :: 2,266\nGenes (RNA) :: 103\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 10 of 31\nPseudo Genes (incomplete) :: 15 of 31\nPseudo Genes (internal stop) :: 12 of 31\nPseudo Genes (multiple problems) :: 5 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Carnobacterium inhibens subsp. gilichinskyi
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007723195.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
CagC family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723199.1
TrsD/TraD family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723203.1
COORDINATES: protein motif:HMM:NF025081.2
COORDINATES: similar to AA sequence:RefSeq:WP_007723213.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723452.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007723454.1
COORDINATES: protein motif:HMM:TIGR01716.1
Rgg/GadR/MutR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF025675.2
COORDINATES: similar to AA sequence:RefSeq:WP_000195404.1
COORDINATES: similar to AA sequence:RefSeq:WP_003324274.1
COORDINATES: similar to AA sequence:RefSeq:WP_004271296.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723331.1
COORDINATES: similar to AA sequence:RefSeq:WP_013709643.1
COORDINATES: similar to AA sequence:RefSeq:WP_016172615.1
COORDINATES: similar to AA sequence:RefSeq:WP_013709695.1
COORDINATES: similar to AA sequence:RefSeq:WP_002360832.1
COORDINATES: similar to AA sequence:RefSeq:WP_001071399.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017757.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013712092.1
COORDINATES: similar to AA sequence:RefSeq:WP_013709687.1
COORDINATES: similar to AA sequence:RefSeq:WP_005876259.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015392040.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003242325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007723180.1