Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR12, complete sequence.
type: Entry
definition: Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR12, complete sequence.
sequence version: NC_022601.1
sequence date: 2023-02-05
sequence: sequence
division: CON
label: NC_022601.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604179
keyword: RefSeq
source: Carnobacterium inhibens subsp. gilichinskyi
organism: Carnobacterium inhibens subsp. gilichinskyi
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.
reference: 1
references: 24285647
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP006813.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Celera Assembler (CA) v. 7.0\nCoverage :: 103x\nSequencing Technology :: Pacific Biosciences\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:43:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,400\nCDSs (total) :: 2,297\nGenes (coding) :: 2,266\nCDSs (with protein) :: 2,266\nGenes (RNA) :: 103\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 10 of 31\nPseudo Genes (incomplete) :: 15 of 31\nPseudo Genes (internal stop) :: 12 of 31\nPseudo Genes (multiple problems) :: 5 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12655
topology: circular
so has quality: SO_0000988
location: 1..12655
location: region:1-12655:1
RO_0002162: 1266845

NC_022601
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604179
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)
author: Leonard, M.T.
author: Panayotova, N.
author: Farmerie, W.G.
author: Triplett, E.W.
author: Nicholson, W.L.
journal: Genome Announc 1 (6), e00985-13 (2013)
pubmed: 24285647
comments: Publication Status: Online-Only

24285647
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Nicholson, W.L.
author: Leonard, M.T.
author: Panayotova, N.
author: Farmerie, W.G.
author: Triplett, E.W.
journal: Submitted (21-OCT-2013) Microbiology & Cell Science, University of Florida, 1355 Museum Road, Gainesville, FL 32611, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12655:1
position: 12655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12655:1:source
so part of: sequence
organism: Carnobacterium inhibens subsp. gilichinskyi
mol type: genomic DNA
strain: WN1359
isolation source: Siberian permafrost
sub species: gilichinskyi
culture collection: DSM:27470
type material: type strain of Carnobacterium inhibens subsp. gilichinskyi
plasmid: pWNCR12

1266845
type: Taxonomy
SIO_000068: taxonomy

Q783_RS11180
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11180
old locus tag: Q783_11415
so part of: sequence
location: join(12364..12655,1..80)
location: region:1-12655:1
so has part: feature:12364-12655:1:exon
so has part: feature:1-80:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:12364-12655:1:exon

position:12364:1
position: 12364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-80:1:exon

position:80:1
position: 80
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Q783_RS11180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11180
old locus tag: Q783_11415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620826.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MSEREIFEDTSAERNPKRKEPKQISFRVSEPEFEKLKRSAESLQMSVPAFVKSKAQGAKLVTPKVDRAGAIEIAKQLRAIGNNINQMARATNAAELDPNLATNLTAELQQVQKELNQVWQQLN
SIO_010081: Q783_RS11180
subclass of: SO_0000673
so part of: Q783_RS11180
location: join(12364..12655,1..80)
location: region:1-12655:1
so has part: feature:12364-12655:1:exon
so has part: feature:1-80:1:exon

WP_029276994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12364-12655:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-80:1:exon

Q783_RS11185
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11185
old locus tag: Q783_11420
so part of: sequence
location: 62..1204
location: region:62-1204:1
so has part: feature:62-1204:1:exon
subclass of: SO_0000010

position:62:1
position: 62
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1204:1
position: 1204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62-1204:1:exon

Q783_RS11185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11185
old locus tag: Q783_11420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007725656.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MATIKLARSTSCSRCINYAEPRATVKSGLNCDVTYAKTQMKATRMIYGKDDKVQAHTLIQSFKPGEVTPEQANELGYELARKVASGHQVAIYTHTDKDHIHNHLVINSVNLDTGLKFQAHGVEAIEKVKKINDEICLSHGLTIPEEPAKIRYTAAEKSILERPGQISWKDEIREKIEQAKQTTPNFDAFKEKLAENGVNVIERGKTVTYQHVAENKKVRAKKLGADYEKETIINGFERQFEPTNTRNDKPTTEPRKFEPGSAAIDPSLDRDPELQRSDAATEKFGESQPGEQLTRDSDSDKYSPEQLQQQLEKLRSHTDQLQRDSSKAVNRILETPENDPERPVRQKQDGNREDSARNEPEQRPIKRDKPNHHQDHGPSL
SIO_010081: Q783_RS11185
subclass of: SO_0000673
so part of: Q783_RS11185
location: 62..1204
location: region:62-1204:1
so has part: feature:62-1204:1:exon

WP_023171214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62-1204:1:exon

Q783_RS12225
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS12225
so part of: sequence
location: 1188..1343
location: region:1188-1343:1
so has part: feature:1188-1343:1:exon
subclass of: SO_0000010

position:1188:1
position: 1188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1343:1
position: 1343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1188-1343:1:exon

Q783_RS12225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS12225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQVFEKLNAEIKRTNQKLTMRTAATNLYASVPTGIVVVALMWLLNTFNVW
SIO_010081: Q783_RS12225
subclass of: SO_0000673
so part of: Q783_RS12225
location: 1188..1343
location: region:1188-1343:1
so has part: feature:1188-1343:1:exon

WP_158380585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1188-1343:1:exon

Q783_RS11190
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11190
old locus tag: Q783_11425
so part of: sequence
location: 1988..2710
location: region:1988-2710:1
so has part: feature:1988-2710:1:exon
subclass of: SO_0000010

position:1988:1
position: 1988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2710:1
position: 2710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1988-2710:1:exon

Q783_RS11190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11190
old locus tag: Q783_11425
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MSNEIVKYNNIMNEVSFRKFNPVEFDLFFSLCSKMKLKGSEPITLTFDEVKKLTNYSSRDKVRFIHDLENMYSKMLNLNFRYEDETEIVRFVLFPIYRINKEKNTVTIGVNQEFSYVLNEITTNFTRFELEGFTELRSGYAKTMFRLLKQYKSTGFYIVKIDEFRRILDIPESYRVTDIDKRVLQQIEKELSPLYTKFEIVKKKKKGRGRGGIVSHLEFNFMEKVPPEKQKVPLHNWLEQ
SIO_010081: Q783_RS11190
subclass of: SO_0000673
so part of: Q783_RS11190
location: 1988..2710
location: region:1988-2710:1
so has part: feature:1988-2710:1:exon

WP_023171216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1988-2710:1:exon

Q783_RS11195
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11195
old locus tag: Q783_11430
so part of: sequence
location: 2787..3386
location: region:2787-3386:1
so has part: feature:2787-3386:1:exon
subclass of: SO_0000010

position:2787:1
position: 2787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3386:1
position: 3386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2787-3386:1:exon

Q783_RS11195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11195
old locus tag: Q783_11430
inference: COORDINATES: protein motif:HMM:NF024803.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MKDVEGVTEYITTEEAAKKLGIQLPTLRKYAGMIDKNAKSGKYFERDDRNYRLYTNDNITTINQIIALKSRPKMTIETAIEQILNMEYNVDTPNEIEKHNANNNDITSIQKVLVSQNDLIQKKDEQLLRYDNQIIKYNETINHYETLVKNLTESNINLANQVETMMNNQDQLALDKKEEQLQMENTPGKQGFFSRLFKK
SIO_010081: Q783_RS11195
subclass of: SO_0000673
so part of: Q783_RS11195
location: 2787..3386
location: region:2787-3386:1
so has part: feature:2787-3386:1:exon

WP_023171217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2787-3386:1:exon

Q783_RS11200
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11200
old locus tag: Q783_11435
so part of: sequence
location: complement(3485..3928)
location: region:3485-3928:-1
so has part: feature:3485-3928:-1:exon
subclass of: SO_0000010

position:3485:-1
position: 3485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3928:-1
position: 3928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3485-3928:-1:exon

Q783_RS11200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11200
old locus tag: Q783_11435
inference: COORDINATES: protein motif:HMM:NF012792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MYTYKKYKSTDTEIYKSSLELRNELLRIPFGKSIYDDNLEIEKDNDFYGVFKKNELIGTFSCFEESPHSVRLTAFAIKSNFQGKGLGKGLVEFSISDLKERKYSNISCYALTTAVDFYRKCDFLAVEEPVLNENLGVYNCKMNCNLI
SIO_010081: Q783_RS11200
subclass of: SO_0000673
so part of: Q783_RS11200
location: complement(3485..3928)
location: region:3485-3928:-1
so has part: feature:3485-3928:-1:exon

WP_023171218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3485-3928:-1:exon

Q783_RS11205
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11205
old locus tag: Q783_11440
so part of: sequence
location: complement(4027..4578)
location: region:4027-4578:-1
so has part: feature:4027-4578:-1:exon
subclass of: SO_0000010

position:4027:-1
position: 4027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4578:-1
position: 4578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4027-4578:-1:exon

Q783_RS11205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11205
old locus tag: Q783_11440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005876259.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MSYNVQPLRTQQEINDFLFCLRRNKNANRDVFLFLIGINSGLRMSDIVKLKKQDLVSSKNPRIVEKKTGKTRILYLSSLQDLIQEYTKDLEPEDYLFPSTKGGHVEVNTVYQMFQKVAKLLGRDDIGTHTLRKTFGYHYYKKTKDVATLMEIFGHSSEKITKRYIGINEDEISETLLNFRLGF
SIO_010081: Q783_RS11205
subclass of: SO_0000673
so part of: Q783_RS11205
location: complement(4027..4578)
location: region:4027-4578:-1
so has part: feature:4027-4578:-1:exon

WP_023171219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4027-4578:-1:exon

Q783_RS11210
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11210
old locus tag: Q783_11445
so part of: sequence
location: 4814..5653
location: region:4814-5653:1
so has part: feature:4814-5653:1:exon
subclass of: SO_0000010

position:4814:1
position: 4814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5653:1
position: 5653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4814-5653:1:exon

Q783_RS11210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11210
old locus tag: Q783_11445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013711811.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMKRKKISRFLAIGICGAVLAGCSSNEDNTADTSATESEITQSVDTTNSESSSATSETSSSSESEEASDSEEIPVSSSDQENKESADLSSELKMNPDTVLLPTDFPTADSSSVTADILTNEADNYMINYTDDQGELAEISGTLYESSDLAKEEMDTFSNGKTVGSLEEGGEELGYGITGYMSAGLGSTHFSWEEGNWLFSITSVAEDKMDVPGIAKKMVDYLEEHSLPAPEDMGVVFIQYPQGGEDVNVDIRWQDEDKIYQLKTTKVPLDALEMAVSME
SIO_010081: Q783_RS11210
subclass of: SO_0000673
so part of: Q783_RS11210
location: 4814..5653
location: region:4814-5653:1
so has part: feature:4814-5653:1:exon

WP_023171221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4814-5653:1:exon

Q783_RS11215
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11215
old locus tag: Q783_11450
so part of: sequence
location: complement(5732..6190)
location: region:5732-6190:-1
so has part: feature:5732-6190:-1:exon
subclass of: SO_0000010

position:5732:-1
position: 5732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6190:-1
position: 6190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5732-6190:-1:exon

Q783_RS11215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11215
old locus tag: Q783_11450
inference: COORDINATES: protein motif:HMM:NF020498.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1906 domain-containing protein
translation: MESGLGLMIVQRVKNPGWIPTPSLGTEYGQNAANHVSNLGFPEGITVFLDLEGIDLNTPSSDIIAYCTNWYNEVENKGFSPGIYIAYDSGLDSSQLSNLPFKYYWKSGSNVPVPDTGWDLIQQLPLDIIVNGLQIDENLTQSTDTPVRWLHL
SIO_010081: Q783_RS11215
subclass of: SO_0000673
so part of: Q783_RS11215
location: complement(5732..6190)
location: region:5732-6190:-1
so has part: feature:5732-6190:-1:exon

WP_023171222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5732-6190:-1:exon

Q783_RS11220
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11220
old locus tag: Q783_11455
so part of: sequence
location: complement(6275..6955)
location: region:6275-6955:-1
so has part: feature:6275-6955:-1:exon
subclass of: SO_0000010

position:6275:-1
position: 6275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6955:-1
position: 6955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6275-6955:-1:exon

Q783_RS11220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11220
old locus tag: Q783_11455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRDINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: Q783_RS11220
subclass of: SO_0000673
so part of: Q783_RS11220
location: complement(6275..6955)
location: region:6275-6955:-1
so has part: feature:6275-6955:-1:exon

WP_002325565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6275-6955:-1:exon

Q783_RS11225
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
gene: lspA
locus tag: Q783_RS11225
old locus tag: Q783_11460
so part of: sequence
location: complement(7354..7824)
location: region:7354-7824:-1
so has part: feature:7354-7824:-1:exon
subclass of: SO_0000010

position:7354:-1
position: 7354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7824:-1
position: 7824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7354-7824:-1:exon

Q783_RS11225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
gene: lspA
locus tag: Q783_RS11225
old locus tag: Q783_11460
EC number: 3.4.23.36
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006702661.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO process: GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: signal peptidase II
translation: MILYYLLAAVLIAIDQLVKWGIVQNFALYDELEVIPNIFSLYYIQNRGAAWGILQGRMGLFFIITVLVVGYLVYTFHNLPQRSILAGISFSFILAGALGNFIDRMRLGYVVDMLRFDFIDFPIFNVADVFLTIGVGTMIVYLLFFEKEEGTTSKRD
SIO_010081: Q783_RS11225
subclass of: SO_0000673
so part of: Q783_RS11225
location: complement(7354..7824)
location: region:7354-7824:-1
so has part: feature:7354-7824:-1:exon

WP_007725803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7354-7824:-1:exon

Q783_RS11230
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11230
old locus tag: Q783_11465
so part of: sequence
location: complement(7975..8655)
location: region:7975-8655:-1
so has part: feature:7975-8655:-1:exon
subclass of: SO_0000010

position:7975:-1
position: 7975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8655:-1
position: 8655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7975-8655:-1:exon

Q783_RS11230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11230
old locus tag: Q783_11465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRDINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: Q783_RS11230
subclass of: SO_0000673
so part of: Q783_RS11230
location: complement(7975..8655)
location: region:7975-8655:-1
so has part: feature:7975-8655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7975-8655:-1:exon

Q783_RS11235
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
gene: lspA
locus tag: Q783_RS11235
old locus tag: Q783_11470
so part of: sequence
location: complement(9053..9523)
location: region:9053-9523:-1
so has part: feature:9053-9523:-1:exon
subclass of: SO_0000010

position:9053:-1
position: 9053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9523:-1
position: 9523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9053-9523:-1:exon

Q783_RS11235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
gene: lspA
locus tag: Q783_RS11235
old locus tag: Q783_11470
EC number: 3.4.23.36
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006702661.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO process: GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: signal peptidase II
translation: MILYYLLAAVLIAIDQLVKWGIVQNFALYDELEVIPNIFSLYYIQNRGAAWGILQGRMGLFFIITVLVVGYLVYTFHNLPQRSILAGISFSFILAGALGNFIDRMRLGYVVDMLRFDFIDFPIFNVADVFLTIGVGTMIVYLLFFEKEEGTTSKRD
SIO_010081: Q783_RS11235
subclass of: SO_0000673
so part of: Q783_RS11235
location: complement(9053..9523)
location: region:9053-9523:-1
so has part: feature:9053-9523:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9053-9523:-1:exon

Q783_RS11240
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11240
old locus tag: Q783_11475
pseudo: true
so part of: sequence
location: complement(9674..>10282)
location: region:9674-10282:-1
so has part: feature:9674-10282:-1:exon
subclass of: SO_0000010

position:9674:-1
position: 9674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10282:-1
position: 10282
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9674-10282:-1:exon

Q783_RS11240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11240
old locus tag: Q783_11475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
SIO_010081: Q783_RS11240
subclass of: SO_0000673
so part of: Q783_RS11240
location: complement(9674..>10282)
location: region:9674-10282:-1
so has part: feature:9674-10282:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9674-10282:-1:exon

Q783_RS11245
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11245
old locus tag: Q783_11480
so part of: sequence
location: complement(10288..10905)
location: region:10288-10905:-1
so has part: feature:10288-10905:-1:exon
subclass of: SO_0000010

position:10288:-1
position: 10288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10905:-1
position: 10905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10288-10905:-1:exon

Q783_RS11245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11245
old locus tag: Q783_11480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016177616.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CadD family cadmium resistance transporter
translation: MLQSIFSAIAVYISTSIDYLFILLIIFSQSHTKKGLRQIFWGQYLGTGILVAVSLFAAYVLNFIPQNWIIGLLGLIPIFLGIRVALVGEEEEEEEEVVEKLESRGTNRFFWTVALITIASGGDNLGIYIPYFASLSFSEIVTALIVFAISVAVLCYISYKLAKISFVSETLEKYERILVPIVFIGLGIYILIENGTIQTVLSLFN
SIO_010081: Q783_RS11245
subclass of: SO_0000673
so part of: Q783_RS11245
location: complement(10288..10905)
location: region:10288-10905:-1
so has part: feature:10288-10905:-1:exon

WP_023171224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10288-10905:-1:exon

Q783_RS11250
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11250
old locus tag: Q783_11485
so part of: sequence
location: complement(10922..11284)
location: region:10922-11284:-1
so has part: feature:10922-11284:-1:exon
subclass of: SO_0000010

position:10922:-1
position: 10922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11284:-1
position: 11284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10922-11284:-1:exon

Q783_RS11250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11250
old locus tag: Q783_11485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002342386.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MEKVCQVTIVHKEKVDTVKNKLIKKDLSSLIVLGKCFSNSSRIKIFYALENFKEMCVCDLAELLDASIATTSHHLRFLKKHGMAKSRQDGKVVYYSLANEDILSAIHVFLKLSENLSMKS
SIO_010081: Q783_RS11250
subclass of: SO_0000673
so part of: Q783_RS11250
location: complement(10922..11284)
location: region:10922-11284:-1
so has part: feature:10922-11284:-1:exon

WP_023171225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10922-11284:-1:exon

Q783_RS11255
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11255
old locus tag: Q783_11490
so part of: sequence
location: 11466..11720
location: region:11466-11720:1
so has part: feature:11466-11720:1:exon
subclass of: SO_0000010

position:11466:1
position: 11466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11720:1
position: 11720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11466-11720:1:exon

Q783_RS11255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11255
old locus tag: Q783_11490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000587616.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system Phd/YefM family antitoxin
translation: MSIVNPSQARKVFYQLLKDVNKTNEPIYISGKNEESEAVMVSKKDWDAIQETLYLQSAGVADVIHQREQENEFVALEDIDWDTL
SIO_010081: Q783_RS11255
subclass of: SO_0000673
so part of: Q783_RS11255
location: 11466..11720
location: region:11466-11720:1
so has part: feature:11466-11720:1:exon

WP_010620828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11466-11720:1:exon

Q783_RS11260
type: Gene
subclass of: SO_0000704
RO_0002162: 1266845
locus tag: Q783_RS11260
old locus tag: Q783_11495
so part of: sequence
location: 11705..11971
location: region:11705-11971:1
so has part: feature:11705-11971:1:exon
subclass of: SO_0000010

position:11705:1
position: 11705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11971:1
position: 11971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11705-11971:1:exon

Q783_RS11260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1266845
locus tag: Q783_RS11260
old locus tag: Q783_11495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620827.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MGYSVKLAKSATKDLKHLKGAHLDQKFKDLMEVLKENPFQNPPPYEKLVGNLKDKYSRRLNIQHRVVYSVDNDAKEVIIWSTWTHYER
SIO_010081: Q783_RS11260
subclass of: SO_0000673
so part of: Q783_RS11260
location: 11705..11971
location: region:11705-11971:1
so has part: feature:11705-11971:1:exon

WP_023171226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11705-11971:1:exon