Streptomyces rimosus subsp. rimosus ATCC 10970 plasmid pSRP1, complete sequence.
Streptomyces rimosus subsp. rimosus ATCC 10970
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Bilateral symmetry of linear streptomycete chromosomes
Submitted (29-JAN-2020) SIPBS, University of Strathclyde, 161 Cathedral Street, Glasgow, Scotland G4 0RE, United Kingdom
Submitted (14-DEC-2012) Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, 161 Cathedral Street, Glasgow, Lanarkshire G4 0RE, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nCP048262.1.\nBacteria and source DNA available from Paul Herron, SIPBS,\nUniversity of Strathclyde, Glasgow, G4 0RE, UK.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 30-JUN-2018\nAssembly Method :: HGAP v. 15/06/2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/17/2023 06:02:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,488\nCDSs (total) :: 8,396\nGenes (coding) :: 8,201\nCDSs (with protein) :: 8,201\nGenes (RNA) :: 92\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 195\nCDSs (without protein) :: 195\nPseudo Genes (ambiguous residues) :: 0 of 195\nPseudo Genes (frameshifted) :: 69 of 195\nPseudo Genes (incomplete) :: 157 of 195\nPseudo Genes (internal stop) :: 18 of 195\nPseudo Genes (multiple problems) :: 43 of 195\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014043711.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019063724.1
COORDINATES: similar to AA sequence:RefSeq:WP_005452789.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019811547.1
COORDINATES: similar to AA sequence:RefSeq:WP_003983522.1
COORDINATES: similar to AA sequence:RefSeq:WP_003986479.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043462.1
COORDINATES: similar to AA sequence:RefSeq:WP_018563773.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006139026.1
COORDINATES: similar to AA sequence:RefSeq:WP_016438275.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016574532.1
COORDINATES: similar to AA sequence:RefSeq:WP_006139019.1
COORDINATES: similar to AA sequence:RefSeq:WP_003984060.1
COORDINATES: similar to AA sequence:RefSeq:WP_003984061.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019524931.1
COORDINATES: similar to AA sequence:RefSeq:WP_020550096.1
TnsA-like heteromeric transposase endonuclease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011026768.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010069772.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523373.1
GO:0003676 - nucleic acid binding [Evidence IEA]
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007268373.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003985379.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020138567.1
GO:0008752 - FMN reductase activity [Evidence IEA]
GO:0044273 - sulfur compound catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003994774.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003985383.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014677105.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020138564.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003969240.1
COORDINATES: protein motif:HMM:NF013592.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015575508.1
COORDINATES: similar to AA sequence:RefSeq:WP_018567695.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003982239.1
endo-beta-N-acetylglucosaminidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009714903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013731328.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016827728.1
aminoglycoside adenylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010982322.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016643192.1
COORDINATES: similar to AA sequence:RefSeq:WP_018843742.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018538951.1
COORDINATES: protein motif:HMM:NF015696.2
COORDINATES: protein motif:HMM:NF039373.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005167255.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010060717.1
COORDINATES: similar to AA sequence:RefSeq:WP_007265182.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
phenylacetic acid degradation protein PaaN
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_016253135.1
COORDINATES: similar to AA sequence:RefSeq:WP_017540772.1
COORDINATES: similar to AA sequence:RefSeq:WP_003953783.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006213685.1
COORDINATES: similar to AA sequence:RefSeq:WP_006379231.1
COORDINATES: protein motif:HMM:NF025186.2
COORDINATES: similar to AA sequence:RefSeq:WP_013734563.1
COORDINATES: similar to AA sequence:RefSeq:WP_003952314.1
COORDINATES: similar to AA sequence:RefSeq:WP_018552909.1
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: similar to AA sequence:RefSeq:WP_019984222.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268351.1
COORDINATES: similar to AA sequence:RefSeq:WP_003978807.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039381.1
COORDINATES: similar to AA sequence:RefSeq:WP_007387439.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612234.1
COORDINATES: similar to AA sequence:RefSeq:WP_003946701.1
COORDINATES: protein motif:HMM:NF012784.2
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012998027.1
COORDINATES: similar to AA sequence:RefSeq:WP_007168437.1
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_004948596.1
COORDINATES: similar to AA sequence:RefSeq:WP_004948594.1
GO:0030598 - rRNA N-glycosylase activity [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004948591.1
ricin-type beta-trefoil lectin domain protein
COORDINATES: similar to AA sequence:RefSeq:WP_003985712.1
COORDINATES: similar to AA sequence:RefSeq:WP_003984114.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979505.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979132.1
COORDINATES: similar to AA sequence:RefSeq:WP_018895668.1
COORDINATES: protein motif:HMM:NF012859.2
GO:0030246 - carbohydrate binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010981556.1
COORDINATES: protein motif:HMM:NF039687.1
COORDINATES: similar to AA sequence:RefSeq:WP_009721238.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555019.1
COORDINATES: similar to AA sequence:RefSeq:WP_018383898.1
COORDINATES: similar to AA sequence:RefSeq:WP_018383899.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: similar to AA sequence:RefSeq:WP_009998750.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979011.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677486.1
COORDINATES: similar to AA sequence:RefSeq:WP_007389172.1
COORDINATES: similar to AA sequence:RefSeq:WP_011558666.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669152.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018106296.1
COORDINATES: protein motif:HMM:NF014941.2
COORDINATES: similar to AA sequence:RefSeq:WP_014046635.1
COORDINATES: similar to AA sequence:RefSeq:WP_018511614.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019074336.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074337.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074412.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039419.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329467.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677512.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569231.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329464.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329463.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019074400.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329453.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329462.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039409.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043613.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569241.1
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018555001.1
GO:0008270 - zinc ion binding [Evidence IEA]
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018522967.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522975.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158435.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_019329437.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043586.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554944.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329434.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009188446.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677464.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677463.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677462.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF039462.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979122.1
COORDINATES: similar to AA sequence:RefSeq:WP_014138961.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018488997.1
COORDINATES: similar to AA sequence:RefSeq:WP_019057539.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449529.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449530.1
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_009064567.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009064569.1
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF025298.2
COORDINATES: similar to AA sequence:RefSeq:WP_003978644.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004938394.1
COORDINATES: similar to AA sequence:RefSeq:WP_020555912.1
COORDINATES: similar to AA sequence:RefSeq:WP_012094587.1
CGNR zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF037360.2
COORDINATES: similar to AA sequence:RefSeq:WP_014050250.1
COORDINATES: protein motif:HMM:NF012656.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012428.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007455091.1
COORDINATES: similar to AA sequence:RefSeq:WP_003980520.1
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018569284.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554937.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109685.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010063825.1
COORDINATES: similar to AA sequence:RefSeq:WP_019524915.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_012379527.1
COORDINATES: similar to AA sequence:RefSeq:WP_020390914.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043476.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014043481.1
ISKra4-like element ISSri1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019075890.1
COORDINATES: similar to AA sequence:RefSeq:WP_005477573.1
COORDINATES: similar to AA sequence:RefSeq:WP_005477572.1
COORDINATES: similar to AA sequence:RefSeq:WP_010981649.1
COORDINATES: similar to AA sequence:RefSeq:WP_016643580.1
COORDINATES: similar to AA sequence:RefSeq:WP_020121507.1
COORDINATES: similar to AA sequence:RefSeq:WP_003981775.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979142.1
COORDINATES: similar to AA sequence:RefSeq:WP_017237990.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611110.1
COORDINATES: similar to AA sequence:RefSeq:WP_003987311.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014627336.1
COORDINATES: protein motif:HMM:NF019227.2
polymorphic toxin-type HINT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006139010.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003985588.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_020555799.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742101.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003963345.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: similar to AA sequence:RefSeq:WP_016572767.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979133.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_003986471.1