Tritonibacter mobilis F1926 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Tritonibacter.
Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis
Submitted (04-APR-2016) DTU Systems Biology, Technical University of Denmark, Matematiktorvet 301, Kgs. Lyngby 2800, Denmark
Submitted (04-APR-2013) Department of Systems Biology, Technical University of Denmark, Soltofts Plads Bld. 221, Kgs. Lyngby, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP015233.1.\nBacteria available from Lone Gram, Department of Systems Biology,\nTechnical University of Denmark, Soltofts Plads Bld. 221, Kgs.\nLyngby, Denmark.\nBacteria available from Lone Gram, Technical University of Denmark,\nMatematiktorvet 301, 2800 Kgs. Lyngby, Denmark.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Portal v. 2.3.0\nGenome Coverage :: 153.67\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 05:11:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,607\nCDSs (total) :: 4,535\nGenes (coding) :: 4,478\nCDSs (with protein) :: 4,478\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 28 of 57\nPseudo Genes (incomplete) :: 40 of 57\nPseudo Genes (internal stop) :: 23 of 57\nPseudo Genes (multiple problems) :: 26 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009824495.1
GO:0003824 - catalytic activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009808009.1
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007427716.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009824490.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824489.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005619163.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619165.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009824487.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619169.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824486.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619174.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824484.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619178.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807486.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567396.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619187.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824480.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011568504.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824478.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573635.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824476.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_009824475.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_009824474.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803387.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824472.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824471.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005619214.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009824465.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009824464.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017838603.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009824461.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824460.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF022694.2
COORDINATES: similar to AA sequence:RefSeq:WP_005619233.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824457.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937401.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807474.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009824455.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824454.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_009824453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824452.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335980.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009824450.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503863.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807966.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574209.1
COORDINATES: similar to AA sequence:RefSeq:WP_005617061.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574207.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005617054.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009819698.1
COORDINATES: similar to AA sequence:RefSeq:WP_005617048.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503884.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807542.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007120641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187358.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807539.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009820261.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187077.1
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007120648.1
type II toxin-antitoxin system YhaV family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008282928.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819682.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503768.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820257.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808043.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303594.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282972.1
transglutaminase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005645239.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018303599.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827282.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803474.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001721.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647556.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803468.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803465.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803463.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282830.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018303609.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008282832.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824429.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0017000 - antibiotic biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009824428.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820125.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
manganese-binding transcriptional regulator MntR
COORDINATES: similar to AA sequence:RefSeq:WP_009820126.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820127.1
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008282839.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009824422.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_009815495.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803450.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613342.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503854.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613345.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009807500.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824417.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282846.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824416.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824415.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009824414.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005004498.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613353.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613354.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824511.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613358.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848473.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242139.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824506.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805226.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848467.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824503.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824502.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824501.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927551.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573583.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824498.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824497.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177932.1