Tritonibacter mobilis F1926 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Tritonibacter.
Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis
Submitted (04-APR-2016) DTU Systems Biology, Technical University of Denmark, Matematiktorvet 301, Kgs. Lyngby 2800, Denmark
Submitted (04-APR-2013) Department of Systems Biology, Technical University of Denmark, Soltofts Plads Bld. 221, Kgs. Lyngby, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP015232.1.\nBacteria available from Lone Gram, Department of Systems Biology,\nTechnical University of Denmark, Soltofts Plads Bld. 221, Kgs.\nLyngby, Denmark.\nBacteria available from Lone Gram, Technical University of Denmark,\nMatematiktorvet 301, 2800 Kgs. Lyngby, Denmark.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Portal v. 2.3.0\nGenome Coverage :: 153.67\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 05:11:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,607\nCDSs (total) :: 4,535\nGenes (coding) :: 4,478\nCDSs (with protein) :: 4,478\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 28 of 57\nPseudo Genes (incomplete) :: 40 of 57\nPseudo Genes (internal stop) :: 23 of 57\nPseudo Genes (multiple problems) :: 26 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005863182.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008330130.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043334.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500939.1
COORDINATES: similar to AA sequence:RefSeq:WP_005863178.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876262.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008560692.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter permease subunit UrtB
COORDINATES: similar to AA sequence:RefSeq:WP_008333363.1
urea ABC transporter permease subunit UrtC
COORDINATES: similar to AA sequence:RefSeq:WP_008562873.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter ATP-binding protein UrtD
COORDINATES: similar to AA sequence:RefSeq:WP_008333365.1
urea ABC transporter ATP-binding subunit UrtE
COORDINATES: similar to AA sequence:RefSeq:WP_008596068.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_017929874.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758969.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008758462.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017929871.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606718.1
COORDINATES: similar to AA sequence:RefSeq:WP_003499576.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008758862.1
COORDINATES: protein motif:HMM:NF019349.2
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010913227.1
dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013891345.1
COORDINATES: similar to AA sequence:RefSeq:WP_015314083.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863001.1
COORDINATES: similar to AA sequence:RefSeq:WP_007197935.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596513.1
COORDINATES: similar to AA sequence:RefSeq:WP_008550932.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120755.1
COORDINATES: similar to AA sequence:RefSeq:WP_011047195.1
COORDINATES: similar to AA sequence:RefSeq:WP_015314076.1
indolepyruvate ferredoxin oxidoreductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008226276.1
indolepyruvate oxidoreductase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017928469.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008757964.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014414015.1
COORDINATES: protein motif:HMM:NF014437.2
COORDINATES: similar to AA sequence:RefSeq:WP_012174712.1
FdtA/QdtA family cupin domain-containing protein
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_007835321.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018147495.1
COORDINATES: protein motif:HMM:NF016464.2
COORDINATES: similar to AA sequence:RefSeq:WP_009157880.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012187363.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815512.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396950.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881728.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889286.1
COORDINATES: similar to AA sequence:RefSeq:WP_010096477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008549329.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014889282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747911.1
GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IEA]
GO:0006751 - glutathione catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014881716.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008549160.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881332.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747904.1
COORDINATES: protein motif:HMM:NF013722.2
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_015496901.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012067241.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496903.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012067243.1
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_010149880.1
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase complex E1 component subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006469762.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015496908.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496909.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469759.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012067250.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937605.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327540.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246957.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815177.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007117821.1
COORDINATES: similar to AA sequence:RefSeq:WP_004377580.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978605.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929623.1
sodium-dependent bicarbonate transport family permease
COORDINATES: similar to AA sequence:RefSeq:WP_007256183.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_009503854.1
COORDINATES: similar to AA sequence:RefSeq:WP_007118630.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_011747909.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747908.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_014889276.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: similar to AA sequence:RefSeq:WP_003539792.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886182.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008193901.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798960.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884116.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886033.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008885937.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879847.1
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014874481.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879851.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879853.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874487.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014879856.1
COORDINATES: similar to AA sequence:RefSeq:WP_005659349.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014874491.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879860.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:TIGR01730.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007624563.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_015917630.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874496.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014874497.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014880613.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019954968.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF012584.2
COORDINATES: similar to AA sequence:RefSeq:WP_014880610.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014880609.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_005619409.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043338.1
COORDINATES: similar to AA sequence:RefSeq:WP_006933715.1