Edwardsiella piscicida strain 18EpOKYJ plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella.
Whole Genome Sequencing of Three Edwardsiella piscicida Isolates From Diseased Fish in South Korea
Submitted (21-JUN-2021) Department of Aquatic Life Medicine, Pukyong National University, 9222, C-21, Pukyong National University, Busan, Busan 48513, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP090969.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1x\nSequencing Technology :: hybrid\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 05:24:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,502\nCDSs (total) :: 3,375\nGenes (coding) :: 3,325\nCDSs (with protein) :: 3,325\nGenes (RNA) :: 127\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 97\nncRNAs :: 5\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 19 of 50\nPseudo Genes (incomplete) :: 35 of 50\nPseudo Genes (internal stop) :: 6 of 50\nPseudo Genes (multiple problems) :: 8 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Paralichthtys olivaceus (Olive flounder)
Do-Hyung Kim professor, Department of Aquatic Life Medicine, Pukyong National University
COORDINATES: similar to AA sequence:RefSeq:WP_012561120.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001749988.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
COORDINATES: similar to AA sequence:RefSeq:WP_004201280.1
trimethoprim-resistant dihydrofolate reductase DfrA14
COORDINATES: protein motif:HMM:NF017524.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS6100 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_143212653.1
COORDINATES: similar to AA sequence:RefSeq:WP_001288433.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612230.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001749967.1
COORDINATES: similar to AA sequence:RefSeq:WP_001532074.1
COORDINATES: similar to AA sequence:RefSeq:WP_001452736.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749965.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749964.1
COORDINATES: protein motif:HMM:NF013014.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749963.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000440698.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749962.1
COORDINATES: similar to AA sequence:RefSeq:WP_000496058.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012561149.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_001749960.1
COORDINATES: similar to AA sequence:RefSeq:WP_000734973.1
IncN-type entry exclusion lipoprotein EexN
COORDINATES: similar to AA sequence:RefSeq:WP_001749958.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216210.1
COORDINATES: similar to AA sequence:RefSeq:WP_000627495.1
COORDINATES: similar to AA sequence:RefSeq:WP_001531258.1
IS21-like element ISSen3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_000744355.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:YP_005220995.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220996.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220997.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220998.1
COORDINATES: similar to AA sequence:RefSeq:WP_001549890.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000376303.1
COORDINATES: similar to AA sequence:RefSeq:NP_308438.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_001039466.1
tetracycline efflux MFS transporter Tet(D)
COORDINATES: similar to AA sequence:RefSeq:WP_000113282.1
tetracycline resistance transcriptional repressor TetR(D)
COORDINATES: similar to AA sequence:RefSeq:WP_032495017.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221001.1
COORDINATES: similar to AA sequence:RefSeq:WP_032489893.1
broad-spectrum class A beta-lactamase TEM-1
COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001516695.1
quinolone resistance pentapeptide repeat protein QnrS1
COORDINATES: similar to AA sequence:RefSeq:WP_017412822.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561167.1
COORDINATES: similar to AA sequence:RefSeq:WP_000884352.1
COORDINATES: similar to AA sequence:RefSeq:WP_000342687.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749975.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749974.1
COORDINATES: similar to AA sequence:RefSeq:WP_000861577.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749972.1
COORDINATES: similar to AA sequence:RefSeq:WP_000999874.1
COORDINATES: similar to AA sequence:RefSeq:WP_000211833.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214483.1
COORDINATES: similar to AA sequence:RefSeq:WP_000129958.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561126.1
COORDINATES: similar to AA sequence:RefSeq:WP_000274934.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000545925.1
COORDINATES: similar to AA sequence:RefSeq:WP_000932975.1
COORDINATES: similar to AA sequence:RefSeq:WP_000881514.1
antirestriction protein ArdAB regulator ArdR
COORDINATES: similar to AA sequence:RefSeq:WP_000447669.1
COORDINATES: similar to AA sequence:RefSeq:WP_107685442.1
translesion error-prone DNA polymerase V autoproteolytic subunit MucA
COORDINATES: similar to AA sequence:RefSeq:WP_032488541.1
translesion error-prone DNA polymerase V subunit MucB
COORDINATES: similar to AA sequence:RefSeq:WP_012561121.1
COORDINATES: similar to AA sequence:RefSeq:WP_000057569.1
antirestriction protein ArdAB regulator ArdK