Raoultella electrica strain DSM 102253 plasmid unnamed5, complete sequence.
type: Entry
definition: Raoultella electrica strain DSM 102253 plasmid unnamed5, complete sequence.
sequence version: NZ_CP041252.1
sequence date: 2022-11-23
sequence: sequence
division: CON
label: NZ_CP041252.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12125603
keyword: RefSeq
source: Raoultella electrica
organism: Raoultella electrica
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP041252.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nAssembly Name :: Raoultella_electrica_DSM\n 102253_HGAP3_10Mb_1SC\nGenome Coverage :: 130x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/23/2022 03:04:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,586\nCDSs (total) :: 5,470\nGenes (coding) :: 5,292\nCDSs (with protein) :: 5,292\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 5\nPseudo Genes (total) :: 178\nCDSs (without protein) :: 178\nPseudo Genes (ambiguous residues) :: 0 of 178\nPseudo Genes (frameshifted) :: 62 of 178\nPseudo Genes (incomplete) :: 138 of 178\nPseudo Genes (internal stop) :: 25 of 178\nPseudo Genes (multiple problems) :: 42 of 178\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 3336
topology: circular
so has quality: SO_0000988
location: 1..3336
location: region:1-3336:1
RO_0002162: 1259973

NZ_CP041252
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12125603
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Raoultella electrica 1GB (DSM 102253T), isolated from anodic biofilms of a glucose-fed microbial fuel cell
author: Thiel, S.
author: Bunk, B.
author: Sproeer, C.
author: Overmann, J.
author: Jahn, D.
author: Biedendieck, R.
journal: Unpublished

2
title: Direct Submission
author: Thiel, S.
author: Bunk, B.
author: Sproeer, C.
author: Overmann, J.
author: Jahn, D.
author: Biedendieck, R.
journal: Submitted (24-JUN-2019) Bioinformatics, Leibniz Institute DSMZ, Inhoffenstr. 7B, Braunschweig 38124, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3336:1
position: 3336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3336:1:source
so part of: sequence
organism: Raoultella electrica
mol type: genomic DNA
strain: DSM 102253
isolation source: anodic biofilm of glucose-fed microbial fuel cell originally inoculated with sewage sludge
culture collection: DSM:102253
type material: type strain of Raoultella electrica
plasmid: unnamed5
country: Japan
collection date: 2013

1259973
type: Taxonomy
SIO_000068: taxonomy

Electrica_RS28310
type: Gene
subclass of: SO_0000704
RO_0002162: 1259973
locus tag: Electrica_RS28310
so part of: sequence
location: join(3146..3336,1)
location: region:1-3336:1
so has part: feature:3146-3336:1:exon
so has part: feature:1-1:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:3146-3336:1:exon

position:3146:1
position: 3146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1:1:exon

Electrica_RS28310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1259973
locus tag: Electrica_RS28310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000166328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rop family plasmid primer RNA-binding protein
translation: MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDAEHLFRTLSSRLDELQDGN
SIO_010081: Electrica_RS28310
subclass of: SO_0000673
so part of: Electrica_RS28310
location: join(3146..3336,1)
location: region:1-3336:1
so has part: feature:3146-3336:1:exon
so has part: feature:1-1:1:exon

WP_023302508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3146-3336:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1:1:exon

Electrica_RS28315
type: Gene
subclass of: SO_0000704
RO_0002162: 1259973
locus tag: Electrica_RS28315
so part of: sequence
location: 1..423
location: region:1-423:1
so has part: feature:1-423:1:exon
subclass of: SO_0000010

position:423:1
position: 423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-423:1:exon

Electrica_RS28315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1259973
locus tag: Electrica_RS28315
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229777.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVIDTSELIRVFGSLDGVIDTVKYDVKSDAESTSINSVGLHDLQHRIALLEAENDGLKGAVKARDEHIDSLRQAMQLPGHKREPSSPPHSPWWKFWKKS
SIO_010081: Electrica_RS28315
subclass of: SO_0000673
so part of: Electrica_RS28315
location: 1..423
location: region:1-423:1
so has part: feature:1-423:1:exon

WP_142256031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-423:1:exon

Electrica_RS28325
type: Gene
subclass of: SO_0000704
RO_0002162: 1259973
locus tag: Electrica_RS28325
pseudo: true
so part of: sequence
location: complement(1171..>1419)
location: region:1171-1419:-1
so has part: feature:1171-1419:-1:exon
subclass of: SO_0000010

position:1171:-1
position: 1171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1419:-1
position: 1419
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1171-1419:-1:exon

Electrica_RS28325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1259973
locus tag: Electrica_RS28325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004178052.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: Electrica_RS28325
subclass of: SO_0000673
so part of: Electrica_RS28325
location: complement(1171..>1419)
location: region:1171-1419:-1
so has part: feature:1171-1419:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1171-1419:-1:exon

Electrica_RS28330
type: Gene
subclass of: SO_0000704
RO_0002162: 1259973
locus tag: Electrica_RS28330
old locus tag: electrica_05669
pseudo: true
so part of: sequence
location: <1418..1901
location: region:1418-1901:1
so has part: feature:1418-1901:1:exon
subclass of: SO_0000010

position:1418:1
position: 1418
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1901:1
position: 1901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1418-1901:1:exon

Electrica_RS28330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1259973
locus tag: Electrica_RS28330
old locus tag: electrica_05669
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010904246.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S-type pyocin domain-containing protein
SIO_010081: Electrica_RS28330
subclass of: SO_0000673
so part of: Electrica_RS28330
location: <1418..1901
location: region:1418-1901:1
so has part: feature:1418-1901:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1418-1901:1:exon

Electrica_RS28335
type: Gene
subclass of: SO_0000704
RO_0002162: 1259973
locus tag: Electrica_RS28335
old locus tag: electrica_05670
pseudo: true
so part of: sequence
location: 1904..2165
location: region:1904-2165:1
so has part: feature:1904-2165:1:exon
subclass of: SO_0000010

position:1904:1
position: 1904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2165:1
position: 2165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1904-2165:1:exon

Electrica_RS28335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1259973
locus tag: Electrica_RS28335
old locus tag: electrica_05670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004152296.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: bacteriocin immunity protein
SIO_010081: Electrica_RS28335
subclass of: SO_0000673
so part of: Electrica_RS28335
location: 1904..2165
location: region:1904-2165:1
so has part: feature:1904-2165:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1904-2165:1:exon

Electrica_RS28340
type: Gene
subclass of: SO_0000704
RO_0002162: 1259973
locus tag: Electrica_RS28340
so part of: sequence
location: 2269..2424
location: region:2269-2424:1
so has part: feature:2269-2424:1:exon
subclass of: SO_0000010

position:2269:1
position: 2269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2424:1
position: 2424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2269-2424:1:exon

Electrica_RS28340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1259973
locus tag: Electrica_RS28340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008323621.1
GO component: GO:0019867 - outer membrane [Evidence IEA]
GO process: GO:0019835 - cytolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: colicin release lysis protein
translation: MKKLLFLGVVTVSVVLAACQVNNVRDTGGGAVSPSSTVTGVTLDSGTNGNP
SIO_010081: Electrica_RS28340
subclass of: SO_0000673
so part of: Electrica_RS28340
location: 2269..2424
location: region:2269-2424:1
so has part: feature:2269-2424:1:exon

WP_071561715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2269-2424:1:exon