Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
Complete genome sequence of Raoultella electrica 1GB (DSM 102253T), isolated from anodic biofilms of a glucose-fed microbial fuel cell
Submitted (24-JUN-2019) Bioinformatics, Leibniz Institute DSMZ, Inhoffenstr. 7B, Braunschweig 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP041251.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nAssembly Name :: Raoultella_electrica_DSM\n 102253_HGAP3_10Mb_1SC\nGenome Coverage :: 130x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/23/2022 03:04:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,586\nCDSs (total) :: 5,470\nGenes (coding) :: 5,292\nCDSs (with protein) :: 5,292\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 5\nPseudo Genes (total) :: 178\nCDSs (without protein) :: 178\nPseudo Genes (ambiguous residues) :: 0 of 178\nPseudo Genes (frameshifted) :: 62 of 178\nPseudo Genes (incomplete) :: 138 of 178\nPseudo Genes (internal stop) :: 25 of 178\nPseudo Genes (multiple problems) :: 42 of 178\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
anodic biofilm of glucose-fed microbial fuel cell originally inoculated with sewage sludge
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001419739.1
COORDINATES: similar to AA sequence:RefSeq:WP_001434037.1
COORDINATES: similar to AA sequence:RefSeq:WP_000750964.1
COORDINATES: similar to AA sequence:RefSeq:WP_000244005.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001031682.1
COORDINATES: similar to AA sequence:RefSeq:WP_001000143.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_000548955.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012443211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012443212.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_001542008.1
COORDINATES: similar to AA sequence:RefSeq:WP_001287984.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000726934.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000147044.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_002215715.1
COORDINATES: similar to AA sequence:RefSeq:WP_000988150.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412269.1
COORDINATES: similar to AA sequence:RefSeq:WP_001330833.1
COORDINATES: similar to AA sequence:RefSeq:WP_001549937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001293127.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: similar to AA sequence:RefSeq:WP_007372333.1
COORDINATES: similar to AA sequence:RefSeq:WP_001487124.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000516228.1
COORDINATES: similar to AA sequence:RefSeq:WP_001096506.1
COORDINATES: similar to AA sequence:RefSeq:WP_000586934.1
COORDINATES: similar to AA sequence:RefSeq:WP_000753495.1
COORDINATES: similar to AA sequence:RefSeq:WP_001058980.1
COORDINATES: similar to AA sequence:RefSeq:WP_000280996.1
COORDINATES: similar to AA sequence:RefSeq:WP_012443237.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229128.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314677.1
COORDINATES: similar to AA sequence:RefSeq:WP_000868277.1
COORDINATES: similar to AA sequence:RefSeq:WP_001401654.1
COORDINATES: similar to AA sequence:RefSeq:WP_000545938.1
COORDINATES: similar to AA sequence:RefSeq:WP_001025391.1