Raoultella electrica strain DSM 102253 plasmid unnamed3, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
Complete genome sequence of Raoultella electrica 1GB (DSM 102253T), isolated from anodic biofilms of a glucose-fed microbial fuel cell
Submitted (24-JUN-2019) Bioinformatics, Leibniz Institute DSMZ, Inhoffenstr. 7B, Braunschweig 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP041250.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nAssembly Name :: Raoultella_electrica_DSM\n 102253_HGAP3_10Mb_1SC\nGenome Coverage :: 130x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/23/2022 03:04:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,586\nCDSs (total) :: 5,470\nGenes (coding) :: 5,292\nCDSs (with protein) :: 5,292\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 5\nPseudo Genes (total) :: 178\nCDSs (without protein) :: 178\nPseudo Genes (ambiguous residues) :: 0 of 178\nPseudo Genes (frameshifted) :: 62 of 178\nPseudo Genes (incomplete) :: 138 of 178\nPseudo Genes (internal stop) :: 25 of 178\nPseudo Genes (multiple problems) :: 42 of 178\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
anodic biofilm of glucose-fed microbial fuel cell originally inoculated with sewage sludge
COORDINATES: similar to AA sequence:RefSeq:WP_004098982.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010260829.1
ParA family plasmid-partitioning AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_001245882.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197635.1
COORDINATES: similar to AA sequence:RefSeq:WP_016162084.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017827075.1
COORDINATES: similar to AA sequence:RefSeq:WP_019705992.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004152342.1
ISL3-like element ISKpn25 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017899884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017899885.1
COORDINATES: similar to AA sequence:RefSeq:NP_052635.1
type II toxin-antitoxin system toxin CcdB
COORDINATES: similar to AA sequence:RefSeq:NP_858357.1
type II toxin-antitoxin system antitoxin CcdA
COORDINATES: similar to AA sequence:RefSeq:WP_000952217.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004200907.1
COORDINATES: similar to AA sequence:RefSeq:WP_020805590.1
COORDINATES: similar to AA sequence:RefSeq:WP_020805591.1
COORDINATES: similar to AA sequence:RefSeq:WP_004200891.1
COORDINATES: similar to AA sequence:RefSeq:WP_001567366.1
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004201219.1
IS66-like element ISKpn24 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004966400.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001567367.1
GO:0098567 - periplasmic side of plasma membrane [Evidence IEA]
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001567368.1
GO:0004803 - transposase activity [Evidence IEA]
ISNCY-like element ISKpn21 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004883463.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316929.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316924.1
COORDINATES: similar to AA sequence:RefSeq:WP_000019445.1
IS5-like element ISKpn26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020326821.1
Tn3-like element Tn5403 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015855082.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064123.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005229706.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:YP_005229707.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229708.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229710.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229711.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152596.1
COORDINATES: similar to AA sequence:RefSeq:WP_020315139.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229714.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:YP_005229715.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229716.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:YP_005229717.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:YP_005229718.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:YP_005229719.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_076612040.1
IS30-like element ISAs2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_041204928.1
ISAs1-like element ISKpn9 family transposase
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004194116.1
COORDINATES: similar to AA sequence:RefSeq:WP_004194113.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152493.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229723.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005229724.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229725.1
COORDINATES: similar to AA sequence:RefSeq:WP_015632466.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1
COORDINATES: similar to AA sequence:RefSeq:WP_005970021.1
COORDINATES: similar to AA sequence:RefSeq:WP_019845263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011094652.1
COORDINATES: similar to AA sequence:RefSeq:WP_019845265.1
COORDINATES: similar to AA sequence:RefSeq:WP_008499867.1
COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001562885.1
COORDINATES: similar to AA sequence:RefSeq:WP_020804573.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229745.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152656.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004152655.1
COORDINATES: similar to AA sequence:RefSeq:NP_490554.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229750.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229751.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229752.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229753.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229755.1
COORDINATES: similar to AA sequence:RefSeq:WP_020317118.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229757.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229758.1
COORDINATES: similar to AA sequence:RefSeq:WP_001198918.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229761.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229762.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229763.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229764.1
COORDINATES: similar to AA sequence:RefSeq:NP_052644.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229766.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229767.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:YP_005229768.1
COORDINATES: similar to AA sequence:RefSeq:YP_005226014.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:YP_005229772.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008502211.1