Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
Complete genome sequence of Raoultella electrica 1GB (DSM 102253T), isolated from anodic biofilms of a glucose-fed microbial fuel cell
Submitted (24-JUN-2019) Bioinformatics, Leibniz Institute DSMZ, Inhoffenstr. 7B, Braunschweig 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP041249.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nAssembly Name :: Raoultella_electrica_DSM\n 102253_HGAP3_10Mb_1SC\nGenome Coverage :: 130x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/23/2022 03:04:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,586\nCDSs (total) :: 5,470\nGenes (coding) :: 5,292\nCDSs (with protein) :: 5,292\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 5\nPseudo Genes (total) :: 178\nCDSs (without protein) :: 178\nPseudo Genes (ambiguous residues) :: 0 of 178\nPseudo Genes (frameshifted) :: 62 of 178\nPseudo Genes (incomplete) :: 138 of 178\nPseudo Genes (internal stop) :: 25 of 178\nPseudo Genes (multiple problems) :: 42 of 178\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
anodic biofilm of glucose-fed microbial fuel cell originally inoculated with sewage sludge
COORDINATES: similar to AA sequence:RefSeq:WP_016247547.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016247546.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_000843282.1
COORDINATES: similar to AA sequence:RefSeq:WP_004902338.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488541.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178083.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:YP_005229766.1
COORDINATES: similar to AA sequence:RefSeq:NP_052644.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229764.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229763.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229762.1
COORDINATES: similar to AA sequence:RefSeq:WP_020804421.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001198918.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229758.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229757.1
COORDINATES: similar to AA sequence:RefSeq:WP_009654058.1
COORDINATES: similar to AA sequence:RefSeq:WP_020803883.1
COORDINATES: similar to AA sequence:RefSeq:WP_001066419.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_858152.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:NP_709480.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
IS66-like element accessory protein TnpA
COORDINATES: similar to AA sequence:RefSeq:WP_001311849.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229748.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229747.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211744.1
COORDINATES: similar to AA sequence:RefSeq:NP_490557.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314934.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314937.1
COORDINATES: similar to AA sequence:RefSeq:WP_001403205.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000117530.1
COORDINATES: similar to AA sequence:RefSeq:WP_000421673.1
TerB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020805363.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229752.1
COORDINATES: similar to AA sequence:RefSeq:WP_020804024.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314748.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152749.1
COORDINATES: similar to AA sequence:RefSeq:WP_001403164.1
COORDINATES: similar to AA sequence:RefSeq:WP_000080850.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000556933.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314755.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020804860.1
COORDINATES: similar to AA sequence:RefSeq:WP_004194113.1
COORDINATES: similar to AA sequence:RefSeq:WP_001254388.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229719.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:YP_005229718.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:YP_005229717.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_001568101.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_001553749.1
COORDINATES: similar to AA sequence:RefSeq:WP_016233168.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_004152594.1
COORDINATES: similar to AA sequence:RefSeq:WP_020323516.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229708.1
COORDINATES: similar to AA sequence:RefSeq:WP_000069745.1
COORDINATES: similar to AA sequence:RefSeq:WP_020326931.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_004966201.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_016529742.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_001756938.1
COORDINATES: similar to AA sequence:RefSeq:WP_016831049.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:YP_005229701.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_012540032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013214030.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229697.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020315123.1
type-F conjugative transfer system pilin chaperone TraQ
COORDINATES: similar to AA sequence:RefSeq:WP_011977732.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:YP_005229693.1
COORDINATES: similar to AA sequence:RefSeq:WP_020326930.1
conjugal transfer mating pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_004152623.1
TraS, as the term is used in F-like plasmids, is a plasmid entry exclusion protein. It interacts with the F-like plasmid mating stabilization protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugal transfer entry exclusion protein TraS
COORDINATES: similar to AA sequence:RefSeq:YP_005229690.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152630.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_001402905.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020326821.1
Tn3-like element Tn5403 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005229687.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_020315135.1
type-F conjugative transfer system pilin acetylase TraX
COORDINATES: similar to AA sequence:RefSeq:YP_005229685.1
COORDINATES: similar to AA sequence:RefSeq:WP_009653900.1
COORDINATES: similar to AA sequence:RefSeq:WP_004199370.1
COORDINATES: similar to AA sequence:RefSeq:WP_004153014.1
COORDINATES: similar to AA sequence:RefSeq:WP_009652809.1
COORDINATES: similar to AA sequence:RefSeq:WP_004856268.1
COORDINATES: similar to AA sequence:RefSeq:WP_000083819.1
COORDINATES: protein motif:HMM:TIGR03475.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020314728.1
COORDINATES: similar to AA sequence:RefSeq:WP_002438824.1
COORDINATES: similar to AA sequence:RefSeq:WP_001114073.1
As(III)-sensing metalloregulatory transcriptional repressor ArsR
COORDINATES: similar to AA sequence:RefSeq:WP_000855179.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_004152099.1
arsenite efflux transporter ATPase subunit ArsA
COORDINATES: similar to AA sequence:RefSeq:WP_086558260.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1-like element IS1B family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002462980.1
COORDINATES: similar to AA sequence:RefSeq:WP_000019445.1
IS5-like element ISKpn26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000793772.1
COORDINATES: similar to AA sequence:RefSeq:WP_000678527.1
COORDINATES: similar to AA sequence:RefSeq:WP_003031993.1
COORDINATES: similar to AA sequence:RefSeq:WP_000654269.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251292.1
COORDINATES: similar to AA sequence:RefSeq:NP_490541.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_086558263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251293.1
COORDINATES: similar to AA sequence:RefSeq:WP_004902354.1