Leuconostoc carnosum strain CBA3620 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc.
Genome analyses of bacteria isolated from kimchi
Submitted (14-JUN-2019) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP042376.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 801.07x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:32:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,735\nCDSs (total) :: 1,654\nGenes (coding) :: 1,642\nCDSs (with protein) :: 1,642\nGenes (RNA) :: 81\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 4 of 12\nPseudo Genes (incomplete) :: 9 of 12\nPseudo Genes (internal stop) :: 0 of 12\nPseudo Genes (multiple problems) :: 1 of 12\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_032488692.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008391919.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016631768.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012304934.1
COORDINATES: similar to AA sequence:RefSeq:WP_004906024.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014333939.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021585.2
COORDINATES: similar to AA sequence:RefSeq:WP_017369153.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010276791.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012304962.1
COORDINATES: similar to AA sequence:RefSeq:WP_013102149.1
COORDINATES: similar to AA sequence:RefSeq:WP_004903891.1
COORDINATES: similar to AA sequence:RefSeq:WP_013102147.1
COORDINATES: similar to AA sequence:RefSeq:WP_013102146.1
COORDINATES: similar to AA sequence:RefSeq:WP_010277818.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816216.1
ClC family H(+)/Cl(-) exchange transporter
COORDINATES: protein motif:HMM:NF014584.2
COORDINATES: similar to AA sequence:RefSeq:WP_010277807.1
COORDINATES: similar to AA sequence:RefSeq:WP_013102143.1
COORDINATES: similar to AA sequence:RefSeq:WP_010277799.1
COORDINATES: similar to AA sequence:RefSeq:WP_010277795.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010277786.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010277783.1
COORDINATES: similar to AA sequence:RefSeq:WP_010386643.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333945.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_010010572.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016511890.1
iron export ABC transporter permease subunit FetB
COORDINATES: similar to AA sequence:RefSeq:WP_004906025.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014335299.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_013102127.1
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003706982.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_011476586.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002371076.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
COORDINATES: similar to AA sequence:RefSeq:WP_016897252.1
COORDINATES: similar to AA sequence:RefSeq:WP_016374492.1
COORDINATES: similar to AA sequence:RefSeq:WP_003644274.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612162.1
COORDINATES: similar to AA sequence:RefSeq:WP_003639769.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335296.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_014335295.1
COORDINATES: similar to AA sequence:RefSeq:WP_006844824.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006844823.1
COORDINATES: similar to AA sequence:RefSeq:WP_005235674.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006844822.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006844821.1
COORDINATES: similar to AA sequence:RefSeq:WP_004909440.1
COORDINATES: similar to AA sequence:RefSeq:WP_015474696.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576326.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567398.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010001732.1