Leuconostoc carnosum strain CBA3620 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc.
Genome analyses of bacteria isolated from kimchi
Submitted (14-JUN-2019) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP042375.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 801.07x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:32:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,735\nCDSs (total) :: 1,654\nGenes (coding) :: 1,642\nCDSs (with protein) :: 1,642\nGenes (RNA) :: 81\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 4 of 12\nPseudo Genes (incomplete) :: 9 of 12\nPseudo Genes (internal stop) :: 0 of 12\nPseudo Genes (multiple problems) :: 1 of 12\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012952134.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004906327.1
COORDINATES: similar to AA sequence:RefSeq:WP_010002105.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010277799.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002816216.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ClC family H(+)/Cl(-) exchange transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010296331.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006845914.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004906458.1
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006845916.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_006845919.1
COORDINATES: protein motif:HMM:NF013830.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF026247.2
COORDINATES: protein motif:HMM:NF027681.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001868335.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF016852.2
COORDINATES: similar to AA sequence:RefSeq:WP_004901820.1
COORDINATES: similar to AA sequence:RefSeq:WP_010296385.1
CpsD/CapB family tyrosine-protein kinase
COORDINATES: similar to AA sequence:RefSeq:WP_010296388.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002816244.1
CpsB/CapC family capsule biosynthesis tyrosine phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_014975081.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335270.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335269.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975082.1
COORDINATES: similar to AA sequence:RefSeq:WP_010691614.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014335267.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335266.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011666815.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010276702.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017261612.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014335263.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_032488692.1
COORDINATES: similar to AA sequence:RefSeq:WP_010277982.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014335259.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010277991.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015762.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816191.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335292.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015765.1
COORDINATES: similar to AA sequence:RefSeq:WP_010000732.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015769.1
COORDINATES: similar to AA sequence:RefSeq:WP_010386130.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010386127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975113.1
COORDINATES: similar to AA sequence:RefSeq:WP_010278033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975112.1
COORDINATES: similar to AA sequence:RefSeq:WP_004905797.1
COORDINATES: similar to AA sequence:RefSeq:WP_004905793.1
TcpE family conjugal transfer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_002816178.1
COORDINATES: similar to AA sequence:RefSeq:WP_005604271.1
COORDINATES: similar to AA sequence:RefSeq:WP_010697559.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816177.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816176.1
COORDINATES: similar to AA sequence:RefSeq:WP_010278049.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
replication initiation factor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010278051.1
COORDINATES: similar to AA sequence:RefSeq:WP_010000717.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975105.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015787.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816170.1
COORDINATES: similar to AA sequence:RefSeq:WP_012304965.1
COORDINATES: similar to AA sequence:RefSeq:WP_004903402.1
helix-turn-helix transcriptional regulator