Salipiger abyssi strain JLT2014 plasmid pPABY7, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Salipiger.
Deep-sea bacteria in the southern Pacific
Submitted (06-APR-2016) State Key Laboratory for Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Zhoulongquan Building A2-319, Xianan, Xiamen 361005, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP015097.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:28:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,147\nCDSs (total) :: 5,091\nGenes (coding) :: 5,023\nCDSs (with protein) :: 5,023\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 32 of 68\nPseudo Genes (incomplete) :: 33 of 68\nPseudo Genes (internal stop) :: 6 of 68\nPseudo Genes (multiple problems) :: 2 of 68\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019449528.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004634321.1
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005861787.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842470.1
glutathione S-transferase family protein
COORDINATES: protein motif:HMM:NF016999.2
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_012873071.1
COORDINATES: protein motif:HMM:NF019640.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF019013.2
COORDINATES: protein motif:HMM:NF013696.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012253977.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230085.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229919.1
COORDINATES: similar to AA sequence:RefSeq:WP_007111030.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230155.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018066269.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752248.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007752250.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066266.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007752255.1
COORDINATES: similar to AA sequence:RefSeq:WP_008144384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752266.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018066261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752269.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066259.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007752272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063912.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752281.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066254.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003256967.1
GO:0008775 - acetate CoA-transferase activity [Evidence IEA]
GO:0006084 - acetyl-CoA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007802765.1
saccharopine dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009505471.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179450.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179364.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010442313.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010442314.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824261.1
DnaA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011926188.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014765493.1
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF036686.2
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018698299.1
GO:0004121 - cystathionine beta-lyase activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]