Oenococcus oeni strain AWRIB429 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Oenococcus.
Analysis of Transcriptomic Response to SO2 by Oenococcus oeni Growing in Continuous Culture
Submitted (07-OCT-2021) Research, The Australian Wine Research Institute, Corner of Hartley Grove and Paratoo Road, Adelaide 5064, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP084702.1.\nBacteria and source DNA available from Australian Wine Research\nCulture Collection strain AWRIB429.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 06:03:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,970\nCDSs (total) :: 1,916\nGenes (coding) :: 1,851\nCDSs (with protein) :: 1,851\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 35 of 65\nPseudo Genes (incomplete) :: 15 of 65\nPseudo Genes (internal stop) :: 19 of 65\nPseudo Genes (multiple problems) :: 4 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002823702.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
COORDINATES: similar to AA sequence:RefSeq:WP_014940859.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015474742.1
COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
COORDINATES: similar to AA sequence:RefSeq:WP_002819864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690678.1
COORDINATES: similar to AA sequence:RefSeq:WP_003645617.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386908.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002819861.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002824582.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003691581.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680034.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816610.1
COORDINATES: similar to AA sequence:RefSeq:WP_002819953.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660036.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016384005.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016368519.1
COORDINATES: similar to AA sequence:RefSeq:WP_020751798.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586220.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009865.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_002820004.1
COORDINATES: similar to AA sequence:RefSeq:WP_003606337.1
ParA superfamily DNA segregation protein PrgP