Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence.
Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Complete Genome Sequence of Campylobacter iguaniorum Strain 1485ET, Isolated from a Bearded Dragon (Pogona vitticeps)
Submitted (16-JUL-2014) Department of Infectious Diseases and Immunology, Utrecht University, Yalelaan 1, Utrecht 3584 CL, The Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP009044.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 246\nSequencing Technology :: Sanger dideoxy sequencing; 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/11/2022 12:41:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,848\nCDSs (total) :: 1,792\nGenes (coding) :: 1,780\nCDSs (with protein) :: 1,780\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 3 of 12\nPseudo Genes (incomplete) :: 6 of 12\nPseudo Genes (internal stop) :: 4 of 12\nPseudo Genes (multiple problems) :: 1 of 12\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004276275.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011990145.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: similar to AA sequence:RefSeq:WP_004276333.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002938923.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004276231.1
COORDINATES: similar to AA sequence:RefSeq:WP_000746035.1
COORDINATES: protein motif:HMM:NF018751.2
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: similar to AA sequence:RefSeq:WP_015256706.1
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004276561.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002795019.1
COORDINATES: similar to AA sequence:RefSeq:WP_008337020.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004276262.1
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004276234.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024878.2
COORDINATES: similar to AA sequence:RefSeq:WP_011990066.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: similar to AA sequence:RefSeq:WP_004276240.1
TrbC family F-type conjugative pilus assembly protein
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_004276241.1
COORDINATES: similar to AA sequence:RefSeq:WP_005023041.1
COORDINATES: similar to AA sequence:RefSeq:WP_002794781.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005023028.1
COORDINATES: similar to AA sequence:RefSeq:WP_002794880.1
COORDINATES: similar to AA sequence:RefSeq:WP_002188062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011990136.1
COORDINATES: similar to AA sequence:RefSeq:WP_002793350.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_002800805.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011990139.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_002823693.1
COORDINATES: similar to AA sequence:RefSeq:WP_005022130.1