Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis.
Genome degeneration and adaptation in a nascent stage of symbiosis
Submitted (01-JUL-2013) Biology, University of Utah, 257 S 1400 E Rm 201, Salt Lake City, UT 84112, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006570.1.\nSource DNA available upon request.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.7\nGenome Coverage :: >100X\nSequencing Technology :: 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 18:49:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,537\nCDSs (total) :: 4,430\nGenes (coding) :: 4,379\nCDSs (with protein) :: 4,379\nGenes (RNA) :: 107\nrRNAs :: 9, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 7, 7 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 8\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 19 of 51\nPseudo Genes (incomplete) :: 37 of 51\nPseudo Genes (internal stop) :: 15 of 51\nPseudo Genes (multiple problems) :: 16 of 51\nPseudo Genes (short protein) :: 1 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF037679.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016943936.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558267.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010904489.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008104114.1
COORDINATES: similar to AA sequence:RefSeq:WP_012764570.1
COORDINATES: similar to AA sequence:RefSeq:WP_015701019.1
COORDINATES: similar to AA sequence:RefSeq:WP_008104106.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000067287.1
COORDINATES: similar to AA sequence:RefSeq:WP_017801658.1
COORDINATES: similar to AA sequence:RefSeq:WP_017801657.1
COORDINATES: protein motif:HMM:NF022500.2
COORDINATES: protein motif:HMM:NF025849.2
GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]
GO:0016567 - protein ubiquitination [Evidence IEA]
NEL-type E3 ubiquitin ligase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012885258.1
phosphonate metabolism transcriptional regulator PhnF
COORDINATES: similar to AA sequence:RefSeq:WP_017802737.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: similar to AA sequence:RefSeq:WP_006119639.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_007891774.1
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: similar to AA sequence:RefSeq:WP_013202770.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_013202769.1
GO:0018835 - carbon phosphorus lyase activity [Evidence IEA]
phosphonate C-P lyase system protein PhnK
COORDINATES: similar to AA sequence:RefSeq:WP_012764932.1
phosphonate C-P lyase system protein PhnL
COORDINATES: similar to AA sequence:RefSeq:WP_009089476.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_017802730.1
GO:0033863 - ribose 1,5-bisphosphate phosphokinase activity [Evidence IEA]
GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013317274.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014594003.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019454696.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012885246.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_004965563.1
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014870630.1
COORDINATES: similar to AA sequence:RefSeq:WP_012700734.1
COORDINATES: similar to AA sequence:RefSeq:WP_012700735.1
COORDINATES: similar to AA sequence:RefSeq:WP_009521557.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012700737.1
COORDINATES: similar to AA sequence:RefSeq:WP_012700739.1
COORDINATES: similar to AA sequence:RefSeq:WP_009114034.1
COORDINATES: protein motif:HMM:NF024772.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019809159.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_008112736.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006227806.1
COORDINATES: similar to AA sequence:RefSeq:WP_017798916.1
COORDINATES: similar to AA sequence:RefSeq:WP_017900373.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731326.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690353.1
COORDINATES: similar to AA sequence:RefSeq:WP_015854866.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006704072.1
COORDINATES: similar to AA sequence:RefSeq:WP_009636204.1
COORDINATES: similar to AA sequence:RefSeq:WP_017491202.1
COORDINATES: similar to AA sequence:RefSeq:WP_008368271.1
COORDINATES: protein motif:HMM:NF028274.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004937786.1
COORDINATES: similar to AA sequence:RefSeq:WP_004090501.1
COORDINATES: similar to AA sequence:RefSeq:WP_004937780.1
COORDINATES: similar to AA sequence:RefSeq:WP_000534568.1
pilus assembly protein N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004738915.1
COORDINATES: similar to AA sequence:RefSeq:WP_004090516.1
COORDINATES: similar to AA sequence:RefSeq:WP_001483142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012763667.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013511865.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007372451.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007372450.1
COORDINATES: similar to AA sequence:RefSeq:WP_013200426.1
COORDINATES: similar to AA sequence:RefSeq:WP_011808889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013200428.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120674.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227157.1
COORDINATES: similar to AA sequence:RefSeq:WP_016807831.1
COORDINATES: similar to AA sequence:RefSeq:WP_020454957.1
COORDINATES: similar to AA sequence:RefSeq:WP_017492043.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020555957.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578544.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013697946.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017775198.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677006.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028055.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511872.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS cellobiose/arbutin/salicin transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_007890104.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013555634.1
COORDINATES: similar to AA sequence:RefSeq:WP_000728916.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006707073.1
COORDINATES: similar to AA sequence:RefSeq:WP_009128444.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229059.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007370289.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015295 - solute:proton symporter activity [Evidence IEA]
GO:0015718 - monocarboxylic acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017961041.1
COORDINATES: similar to AA sequence:RefSeq:WP_020737578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011410355.1
inverse autotransporter beta domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004191412.1
COORDINATES: similar to AA sequence:RefSeq:WP_020803780.1
L-fucose/L-arabinose isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007373751.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004130310.1
COORDINATES: similar to AA sequence:RefSeq:WP_005972495.1
COORDINATES: similar to AA sequence:RefSeq:WP_004885708.1
COORDINATES: similar to AA sequence:RefSeq:WP_016160460.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004893534.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178959.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008446819.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017801002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006225194.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007370096.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004946938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008361906.1
COORDINATES: similar to AA sequence:RefSeq:WP_006317078.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454137.1
COORDINATES: similar to AA sequence:RefSeq:WP_007697405.1
COORDINATES: similar to AA sequence:RefSeq:WP_016536833.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011194347.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004904005.1
COORDINATES: similar to AA sequence:RefSeq:WP_003851746.1
COORDINATES: similar to AA sequence:RefSeq:WP_020041177.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019460347.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018423098.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009763679.1
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019463113.1
COORDINATES: similar to AA sequence:RefSeq:WP_008531694.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007456134.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018423107.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423106.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: similar to AA sequence:RefSeq:WP_006335684.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010430248.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005120223.1
COORDINATES: similar to AA sequence:RefSeq:WP_005120221.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010431508.1
COORDINATES: similar to AA sequence:RefSeq:WP_004389835.1
GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]; GO:0033294 - ectoine binding [Evidence IEA]; GO:0033295 - hydroxyectoine binding [Evidence IEA]
GO:0051470 - ectoine transport [Evidence IEA]; GO:0033308 - hydroxyectoine transport [Evidence IEA]
ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB
COORDINATES: similar to AA sequence:RefSeq:WP_004389836.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019079747.1
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter permease subunit EhuC
COORDINATES: similar to AA sequence:RefSeq:WP_004389838.1
ectoine/hydroxyectoine ABC transporter permease subunit EhuD
COORDINATES: similar to AA sequence:RefSeq:WP_015474814.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008111435.1
COORDINATES: similar to AA sequence:RefSeq:WP_006462163.1
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF024771.2
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019561936.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016345221.1
COORDINATES: protein motif:HMM:NF019640.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012433101.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007915097.1
COORDINATES: similar to AA sequence:RefSeq:WP_016844854.1
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_004855882.1
COORDINATES: similar to AA sequence:RefSeq:WP_015840189.1
COORDINATES: similar to AA sequence:RefSeq:WP_010275425.1
COORDINATES: similar to AA sequence:RefSeq:WP_012543282.1
COORDINATES: similar to AA sequence:RefSeq:WP_017800613.1
COORDINATES: similar to AA sequence:RefSeq:WP_017800614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110113.1
COORDINATES: similar to AA sequence:RefSeq:WP_015673965.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802306.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600171.1
4-oxalocrotonate tautomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009041681.1
COORDINATES: similar to AA sequence:RefSeq:WP_008876947.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013790357.1
COORDINATES: similar to AA sequence:RefSeq:WP_020290684.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001265633.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004259928.1
COORDINATES: similar to AA sequence:RefSeq:WP_012313369.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_009654189.1
GO:0015288 - porin activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019845372.1
COORDINATES: similar to AA sequence:RefSeq:WP_004259914.1
COORDINATES: similar to AA sequence:RefSeq:WP_015585490.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229519.1
COORDINATES: similar to AA sequence:RefSeq:WP_012907277.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_004137121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012967022.1
COORDINATES: similar to AA sequence:RefSeq:WP_001167369.1
COORDINATES: protein motif:HMM:TIGR01594.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413991.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_011410629.1
COORDINATES: similar to AA sequence:RefSeq:WP_004850123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017709187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649830.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016980509.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_017709184.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016914783.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016453449.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015981294.1
COORDINATES: similar to AA sequence:RefSeq:WP_007079692.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014753443.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003620014.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008460252.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_003545052.1
COORDINATES: similar to AA sequence:RefSeq:WP_014752977.1
COORDINATES: similar to AA sequence:RefSeq:WP_002618235.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387273.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013025629.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_004213072.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229629.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611902.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019923418.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019923419.1
COORDINATES: similar to AA sequence:RefSeq:WP_009351674.1
COORDINATES: similar to AA sequence:RefSeq:WP_000176303.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001395480.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_490541.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859824.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024895.2
GO:0044384 - host outer membrane [Evidence IEA]
Ail/Lom family outer membrane beta-barrel protein
COORDINATES: similar to AA sequence:RefSeq:WP_020304793.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_018751827.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252403.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010260815.1
COORDINATES: similar to AA sequence:RefSeq:WP_013095219.1
COORDINATES: similar to AA sequence:RefSeq:WP_013095220.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020317119.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: protein motif:HMM:NF023351.2
COORDINATES: similar to AA sequence:RefSeq:WP_009114965.1
GO:0016805 - dipeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110638.1
COORDINATES: similar to AA sequence:RefSeq:WP_015697491.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009635307.1
COORDINATES: similar to AA sequence:RefSeq:WP_015697493.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885920.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110631.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110629.1
COORDINATES: similar to AA sequence:RefSeq:WP_007885915.1
COORDINATES: protein motif:HMM:NF012853.2
COORDINATES: protein motif:HMM:NF018244.2
IpaD/SipD/SspD family type III secretion system needle tip protein
COORDINATES: similar to AA sequence:RefSeq:WP_011410311.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system needle filament subunit SctF
COORDINATES: similar to AA sequence:RefSeq:WP_018388738.1
COORDINATES: similar to AA sequence:RefSeq:WP_006519986.1
COORDINATES: similar to AA sequence:RefSeq:WP_012322054.1
COORDINATES: protein motif:HMM:NF020037.2
PAS and helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013574957.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008109778.1
zinc-binding alcohol dehydrogenase family protein
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017348303.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019405498.1
COORDINATES: similar to AA sequence:RefSeq:WP_019080227.1
COORDINATES: protein motif:HMM:NF033828.1
COORDINATES: similar to AA sequence:RefSeq:WP_003580354.1
COORDINATES: similar to AA sequence:RefSeq:WP_006462105.1
COORDINATES: similar to AA sequence:RefSeq:NP_251814.1
COORDINATES: similar to AA sequence:RefSeq:WP_003057044.1
COORDINATES: similar to AA sequence:RefSeq:WP_008943702.1
trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017803301.1
rhodanese homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009111368.1
COORDINATES: similar to AA sequence:RefSeq:WP_009111369.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332771.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015842080.1
COORDINATES: similar to AA sequence:RefSeq:WP_010294583.1
COORDINATES: similar to AA sequence:RefSeq:WP_006606450.1
bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015870566.1
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010618078.1
COORDINATES: similar to AA sequence:RefSeq:WP_012303566.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411336.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011411337.1
manganese/iron ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011411338.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411339.1
COORDINATES: similar to AA sequence:RefSeq:WP_012104908.1
COORDINATES: similar to AA sequence:RefSeq:WP_019455924.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_013812708.1
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_017800422.1
COORDINATES: similar to AA sequence:RefSeq:WP_013200793.1
COORDINATES: similar to AA sequence:RefSeq:WP_008106778.1
COORDINATES: similar to AA sequence:RefSeq:WP_009635590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017800426.1
COORDINATES: similar to AA sequence:RefSeq:WP_013200789.1
COORDINATES: similar to AA sequence:RefSeq:WP_008106788.1
COORDINATES: similar to AA sequence:RefSeq:WP_017800429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538186.1
COORDINATES: similar to AA sequence:RefSeq:WP_011411342.1
COORDINATES: protein motif:HMM:NF016757.2
COORDINATES: similar to AA sequence:RefSeq:WP_016908917.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:NF040007.1
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_011419463.1
COORDINATES: protein motif:HMM:NF017946.2
COORDINATES: similar to AA sequence:RefSeq:WP_009112189.1
COORDINATES: similar to AA sequence:RefSeq:WP_014914828.1
COORDINATES: similar to AA sequence:RefSeq:WP_019083115.1
nitric oxide reductase transcriptional regulator NorR
COORDINATES: similar to AA sequence:RefSeq:WP_019079420.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016966 - nitric oxide reductase activity [Evidence IEA]
anaerobic nitric oxide reductase flavorubredoxin
COORDINATES: similar to AA sequence:RefSeq:WP_016537685.1
GO:0016731 - oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012883557.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0046690 - response to tellurium ion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011136776.1
COORDINATES: protein motif:HMM:NF012606.2
phosphatidylinositol-specific phospholipase C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015377894.1
COORDINATES: similar to AA sequence:RefSeq:WP_016536070.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_014544635.1
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013357728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372961.1
COORDINATES: similar to AA sequence:RefSeq:WP_015272415.1
GO:0008800 - beta-lactamase activity [Evidence IEA]
GO:0030655 - beta-lactam antibiotic catabolic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009521344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110934.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110940.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01879.1
COORDINATES: similar to AA sequence:RefSeq:WP_013356658.1
COORDINATES: similar to AA sequence:RefSeq:WP_004123009.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012320192.1
COORDINATES: similar to AA sequence:RefSeq:WP_020290271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051584.1
COORDINATES: similar to AA sequence:RefSeq:WP_002210058.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177743.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009635627.1
COORDINATES: similar to AA sequence:RefSeq:WP_009635626.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732618.1
COORDINATES: similar to AA sequence:RefSeq:WP_017773580.1
COORDINATES: similar to AA sequence:RefSeq:WP_008018026.1
COORDINATES: similar to AA sequence:RefSeq:WP_006710054.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333819.1
COORDINATES: similar to AA sequence:RefSeq:WP_009093253.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein