Prevotella scopos JCM 17725 strain W2052 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.
Submitted (21-JUN-2016) Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP016206.1.\nDNA isolation: W. G. Wade, Barts and The London School of Medicine\nand Dentistry, Queen Mary University of London, 4 Newark Street,\nLondon E1 2AT United Kingdom.\n Source DNA and bacterial cultures: T. A. Joyce and F. E. Dewhirst\nDirect requests to the Human Oral Microbiome Project, The Forsyth\nInstitute, 245 First Street, Cambridge, MA, 02142, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.8.0\nAssembly Name :: W2052_Prevotella_scopus\nGenome Coverage :: 65x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 14:35:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,638\nCDSs (total) :: 2,574\nGenes (coding) :: 2,494\nCDSs (with protein) :: 2,494\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 35 of 80\nPseudo Genes (incomplete) :: 49 of 80\nPseudo Genes (internal stop) :: 13 of 80\nPseudo Genes (multiple problems) :: 15 of 80\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017645576.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017645928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004327436.1
COORDINATES: similar to AA sequence:RefSeq:WP_000813408.1
COORDINATES: similar to AA sequence:RefSeq:WP_009237662.1
COORDINATES: protein motif:HMM:NF027466.2