Candidatus Pantoea carbekii strain US plasmid pBMSBPS3, complete sequence.
Candidatus Pantoea carbekii (primary bacterial symbiont of Brown Marmorated Stink Bug)
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea.
Habitat visualization and genomic analysis of 'Candidatus Pantoea carbekii,' the primary symbiont of the brown marmorated stink bug
Submitted (02-FEB-2015) The Ohio State University, Evolution, Ecology, and Organismal Biology, 318 West 12th Avenue, Columbus, OH 43210, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP010910.1.\nSource DNA is available from Zakee L. Sabree, sabree.8@osu.edu,\nDepartment of Evolution, Ecology and Organismal Biology, The Ohio\nState University, 318 W. 12th. Avenue Room 300, Columbus, Ohio,\nUSA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: BWA v. 0.6.1\nGenome Coverage :: 1,412X\nSequencing Technology :: Sanger dideoxy sequencing; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 20:12:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 879\nCDSs (total) :: 829\nGenes (coding) :: 802\nCDSs (with protein) :: 802\nGenes (RNA) :: 50\nrRNAs :: 2, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 3 (5S, 16S, 23S)\ntRNAs :: 39\nncRNAs :: 3\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 9 of 27\nPseudo Genes (incomplete) :: 17 of 27\nPseudo Genes (internal stop) :: 11 of 27\nPseudo Genes (multiple problems) :: 9 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
primary bacterial symbiont of Brown Marmorated Stink Bug
COORDINATES: similar to AA sequence:RefSeq:WP_014604568.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_010247479.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019105884.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598218.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008924753.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010618916.1
COORDINATES: similar to AA sequence:RefSeq:WP_006119054.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027125.1
COORDINATES: similar to AA sequence:RefSeq:WP_008106302.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF033674.1
NirD/YgiW/YdeI family stress tolerance protein
COORDINATES: similar to AA sequence:RefSeq:WP_010255269.1