Lawsonia intracellularis N343 plasmid 3, complete sequence.
Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.
Genome Sequence of Lawsonia intracellularis Strain N343, Isolated from a Sow with Hemorrhagic Proliferative Enteropathy
Submitted (09-JAN-2013) Moredun Research Institute, Pentlands Science Park, Bush Loan, Edinburgh, Midlothian EH26 0PZ, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nCP004032.1.\nSource DNA is available from Prof. David G. Smith, Moredun Research\nInstitute (david.g.e.smith@moredun.ac.uk).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: MIRA v. 17/8/12\nCoverage :: x 13\nSequencing Technology :: Illumina\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 01:12:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,496\nCDSs (total) :: 1,441\nGenes (coding) :: 1,439\nCDSs (with protein) :: 1,439\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 2\nCDSs (without protein) :: 2\nPseudo Genes (ambiguous residues) :: 0 of 2\nPseudo Genes (frameshifted) :: 0 of 2\nPseudo Genes (incomplete) :: 1 of 2\nPseudo Genes (internal stop) :: 1 of 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011527320.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527321.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527322.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527323.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527324.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527325.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527326.1
glycoside hydrolase family 99-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527327.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527328.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527329.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527330.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527331.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527332.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527333.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527334.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527335.1
GO:0004801 - transaldolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527336.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527337.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527338.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527342.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527344.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527346.1
COORDINATES: protein motif:HMM:NF028132.2
COORDINATES: similar to AA sequence:RefSeq:WP_011527348.1
COORDINATES: similar to AA sequence:RefSeq:WP_020877412.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009380050.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01630.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527353.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527354.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527355.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527356.1
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_011527358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527359.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527361.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527362.1
COORDINATES: protein motif:HMM:NF015737.2
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527365.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527370.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527371.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527372.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527373.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527374.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527375.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527377.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527378.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527379.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527380.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527381.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527382.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527384.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527385.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527386.1
Mu-like prophage major head subunit gpT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527387.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527388.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527389.1
phage tail sheath C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527390.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527391.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527392.1
COORDINATES: protein motif:HMM:NF018818.2
DNA circularization N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527394.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527395.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527396.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527397.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527398.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527400.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010937755.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527402.1
COORDINATES: similar to AA sequence:RefSeq:WP_010938428.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527404.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527405.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527406.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: similar to AA sequence:RefSeq:WP_011527408.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527409.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527410.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527411.1
PhoPQ-activated protein PqaA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011527412.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527413.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527414.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011527415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527416.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527417.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527418.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527419.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527420.1
GO:0005215 - transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011527421.1
COORDINATES: similar to AA sequence:RefSeq:WP_011527422.1
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF016876.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011527423.1