Cardinium endosymbiont cEper1 of Encarsia pergandiella plasmid pCher, complete sequence.
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Cardinium.
Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii
Submitted (04-SEP-2012) University of Vienna, Department of Microbial Ecology, Althanstr. 14, A-1090 Wien, AUSTRIA
REFSEQ INFORMATION: The reference sequence is identical to\nHE983996.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:46:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 840\nCDSs (total) :: 798\nGenes (coding) :: 747\nCDSs (with protein) :: 747\nGenes (RNA) :: 42\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 2\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 26 of 51\nPseudo Genes (incomplete) :: 31 of 51\nPseudo Genes (internal stop) :: 13 of 51\nPseudo Genes (multiple problems) :: 16 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014935025.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014934335.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012736482.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014934703.1
COORDINATES: similar to AA sequence:RefSeq:WP_014935040.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934985.1
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: protein motif:HMM:NF014430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004118046.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934993.1
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF041497.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF017116.2
COORDINATES: similar to AA sequence:RefSeq:WP_015146133.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934702.1
COORDINATES: similar to AA sequence:RefSeq:WP_011069623.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934957.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006342452.1
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_014934521.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_034576929.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014935024.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF033543.1