Arsenophonus endosymbiont of Aphis craccivora isolate Ash plasmid unnamed1, complete sequence.
Arsenophonus endosymbiont of Aphis craccivora
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Arsenophonus.
A high prevalence insertion sequence dominates the genome of the Arsenophonus endosymbiont of an aphid
Submitted (21-MAR-2019) Entomology, University of Kentucky, S225 Agricultural Sciences Ctr. N., Lexington, KY 40546, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP038156.1.\nBacteria and source DNA available from Jen White, Department of\nEntomology, University of Kentucky.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 28-DEC-2018\nAssembly Method :: Geneious + Manual v. 6.1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: NZ_JRLH00000000.1\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/05/2023 04:10:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,505\nCDSs (total) :: 2,429\nGenes (coding) :: 1,825\nCDSs (with protein) :: 1,825\nGenes (RNA) :: 76\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 5\nPseudo Genes (total) :: 604\nCDSs (without protein) :: 604\nPseudo Genes (ambiguous residues) :: 0 of 604\nPseudo Genes (frameshifted) :: 269 of 604\nPseudo Genes (incomplete) :: 162 of 604\nPseudo Genes (internal stop) :: 347 of 604\nPseudo Genes (multiple problems) :: 162 of 604\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Aphis craccivora (cowpea aphid) on Robinia pseudoacacia (locust)
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025105.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: protein motif:HMM:NF018666.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021209.2
TrbC family F-type conjugative pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_004150659.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugal transfer pilus assembly protein TraU
COORDINATES: protein motif:HMM:TIGR02762.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017337.2
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_015873841.1
COORDINATES: protein motif:HMM:NF018714.2
COORDINATES: similar to AA sequence:RefSeq:WP_003869740.1
GO:0030261 - chromosome condensation [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF024754.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015873870.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF016255.2
COORDINATES: similar to AA sequence:RefSeq:WP_032491235.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018148.2
COORDINATES: similar to AA sequence:RefSeq:WP_011279233.1
Rop family plasmid primer RNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036369.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004963009.1
COORDINATES: similar to AA sequence:RefSeq:WP_001118639.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012847085.1
phosphate-starvation-inducible protein PsiE
COORDINATES: similar to AA sequence:RefSeq:WP_002212220.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018726.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI