Arsenophonus endosymbiont of Aphis craccivora isolate Ash plasmid unnamed1, complete sequence.
type: Entry
definition: Arsenophonus endosymbiont of Aphis craccivora isolate Ash plasmid unnamed1, complete sequence.
sequence version: NZ_CP038156.1
sequence date: 2023-08-07
sequence: sequence
division: CON
label: NZ_CP038156.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11191591
keyword: RefSeq
source: Arsenophonus endosymbiont of Aphis craccivora
organism: Arsenophonus endosymbiont of Aphis craccivora
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Arsenophonus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP038156.1.\nBacteria and source DNA available from Jen White, Department of\nEntomology, University of Kentucky.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 28-DEC-2018\nAssembly Method :: Geneious + Manual v. 6.1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: NZ_JRLH00000000.1\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/05/2023 04:10:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,505\nCDSs (total) :: 2,429\nGenes (coding) :: 1,825\nCDSs (with protein) :: 1,825\nGenes (RNA) :: 76\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 5\nPseudo Genes (total) :: 604\nCDSs (without protein) :: 604\nPseudo Genes (ambiguous residues) :: 0 of 604\nPseudo Genes (frameshifted) :: 269 of 604\nPseudo Genes (incomplete) :: 162 of 604\nPseudo Genes (internal stop) :: 347 of 604\nPseudo Genes (multiple problems) :: 162 of 604\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21722
topology: circular
so has quality: SO_0000988
location: 1..21722
location: region:1-21722:1
RO_0002162: 1231049

NZ_CP038156
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11191591
type: BioSample
SIO_000068: biosample

1
title: A high prevalence insertion sequence dominates the genome of the Arsenophonus endosymbiont of an aphid
author: White, J.A.
author: Kratovil, J.D.
journal: Unpublished

2
title: Direct Submission
author: White, J.A.
author: Kratovil, J.D.
journal: Submitted (21-MAR-2019) Entomology, University of Kentucky, S225 Agricultural Sciences Ctr. N., Lexington, KY 40546, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21722:1
position: 21722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21722:1:source
so part of: sequence
organism: Arsenophonus endosymbiont of Aphis craccivora
mol type: genomic DNA
isolate: Ash
isolation source: Aphis craccivora (cowpea aphid) on Robinia pseudoacacia (locust)
plasmid: unnamed1
country: USA: North Carolina
lat lon: 35.558 N 82.64 W
collection date: 2015-07-12

1231049
type: Taxonomy
SIO_000068: taxonomy

E3U36_RS12845
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12845
so part of: sequence
location: join(21572..21722,1..185)
location: region:1-21722:1
so has part: feature:21572-21722:1:exon
so has part: feature:1-185:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:21572-21722:1:exon

position:21572:1
position: 21572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-185:1:exon

position:185:1
position: 185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

E3U36_RS12845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - DNA transposition [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: transposase
translation: MKTPTRGEISHLVIDSTGLKVFGEGEWKVRQHGADRRRVWRKLHLAADSVTHEIICADLSLSGTTDAQALPGLINQTHRKIREVSADGAYYACYCHAAAWVTFAPLPLLSS
SIO_010081: E3U36_RS12845
subclass of: SO_0000673
so part of: E3U36_RS12845
location: join(21572..21722,1..185)
location: region:1-21722:1
so has part: feature:21572-21722:1:exon
so has part: feature:1-185:1:exon

WP_238337574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21572-21722:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-185:1:exon

E3U36_RS12145
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12145
so part of: sequence
location: complement(268..408)
location: region:268-408:-1
so has part: feature:268-408:-1:exon
subclass of: SO_0000010

position:268:-1
position: 268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408:-1
position: 408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268-408:-1:exon

E3U36_RS12145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPTDFIVNTQTMVAIPVSQGMLSAEMFVNRLAKSFGLAEKLGFLQ
SIO_010081: E3U36_RS12145
subclass of: SO_0000673
so part of: E3U36_RS12145
location: complement(268..408)
location: region:268-408:-1
so has part: feature:268-408:-1:exon

WP_180817672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:268-408:-1:exon

E3U36_RS12150
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12150
old locus tag: E3U36_12015
so part of: sequence
location: complement(405..797)
location: region:405-797:-1
so has part: feature:405-797:-1:exon
subclass of: SO_0000010

position:405:-1
position: 405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:797:-1
position: 797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405-797:-1:exon

E3U36_RS12150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12150
old locus tag: E3U36_12015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTLFAFFVLLFVIPANAAVIDEIAALEKHKTVAVENKLAQQRTVAKAKPQTFRLSTGQVLNITHWQIVHFMKSDCQYCQHFNSLLNATAQQLGIPVFVYSFDGLGDSTFSNVLPVTTDVINDFSMNYHR
SIO_010081: E3U36_RS12150
subclass of: SO_0000673
so part of: E3U36_RS12150
location: complement(405..797)
location: region:405-797:-1
so has part: feature:405-797:-1:exon

WP_180817673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:405-797:-1:exon

E3U36_RS12160
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: traF
locus tag: E3U36_RS12160
old locus tag: E3U36_12025
pseudo: true
so part of: sequence
location: complement(800..1561)
location: region:800-1561:-1
so has part: feature:800-1561:-1:exon
subclass of: SO_0000010

position:800:-1
position: 800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1561:-1
position: 1561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:800-1561:-1:exon

E3U36_RS12160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: traF
locus tag: E3U36_RS12160
old locus tag: E3U36_12025
inference: COORDINATES: protein motif:HMM:NF025105.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type-F conjugative transfer system pilin assembly protein TraF
SIO_010081: E3U36_RS12160
subclass of: SO_0000673
so part of: E3U36_RS12160
location: complement(800..1561)
location: region:800-1561:-1
so has part: feature:800-1561:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:800-1561:-1:exon

E3U36_RS13065
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: traN
locus tag: E3U36_RS13065
old locus tag: E3U36_12030
so part of: sequence
location: complement(1558..1815)
location: region:1558-1815:-1
so has part: feature:1558-1815:-1:exon
subclass of: SO_0000010

position:1558:-1
position: 1558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1815:-1
position: 1815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1558-1815:-1:exon

E3U36_RS13065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: traN
locus tag: E3U36_RS13065
old locus tag: E3U36_12030
inference: COORDINATES: protein motif:HMM:NF018666.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraN
translation: MFDSKLAQIVQAQGRGGQLGVGFGIAKHPDCRGLTIDELQQVKFDALDFTEFHDELNSNTTLPDSKKLTEKISQQIKNELQGRKS
SIO_010081: E3U36_RS13065
subclass of: SO_0000673
so part of: E3U36_RS13065
location: complement(1558..1815)
location: region:1558-1815:-1
so has part: feature:1558-1815:-1:exon

WP_255479114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1558-1815:-1:exon

E3U36_RS13070
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: traN
locus tag: E3U36_RS13070
so part of: sequence
location: complement(1832..2017)
location: region:1832-2017:-1
so has part: feature:1832-2017:-1:exon
subclass of: SO_0000010

position:1832:-1
position: 1832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2017:-1
position: 2017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1832-2017:-1:exon

E3U36_RS13070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: traN
locus tag: E3U36_RS13070
inference: COORDINATES: protein motif:HMM:NF018666.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraN
translation: MAFRKTAIGFSNCCKSIGWGHDIGLASCDSEEKAIGKAKEKGLVVDVGEFCAEDVLGVWFA
SIO_010081: E3U36_RS13070
subclass of: SO_0000673
so part of: E3U36_RS13070
location: complement(1832..2017)
location: region:1832-2017:-1
so has part: feature:1832-2017:-1:exon

WP_255479115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1832-2017:-1:exon

E3U36_RS12850
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: traN
locus tag: E3U36_RS12850
so part of: sequence
location: complement(2022..2258)
location: region:2022-2258:-1
so has part: feature:2022-2258:-1:exon
subclass of: SO_0000010

position:2022:-1
position: 2022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2258:-1
position: 2258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2022-2258:-1:exon

E3U36_RS12850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: traN
locus tag: E3U36_RS12850
inference: COORDINATES: protein motif:HMM:NF018666.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraN
translation: MQKIGNLCVKESVKFQCQQTIHGEGFLCGGTFYCSDGKCAAIASGKNNDFGEAVSQLAALAKAGKDISGEGKNQCVYR
SIO_010081: E3U36_RS12850
subclass of: SO_0000673
so part of: E3U36_RS12850
location: complement(2022..2258)
location: region:2022-2258:-1
so has part: feature:2022-2258:-1:exon

WP_238337575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2022-2258:-1:exon

E3U36_RS12170
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12170
old locus tag: E3U36_12045
so part of: sequence
location: complement(2219..2791)
location: region:2219-2791:-1
so has part: feature:2219-2791:-1:exon
subclass of: SO_0000010

position:2219:-1
position: 2219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2791:-1
position: 2791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2219-2791:-1:exon

E3U36_RS12170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12170
old locus tag: E3U36_12045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVVITPDIEGTIEKVTYTHPGCNRCYGGVEISGFGGDFFYWIGSRHTLSGELNITDRTFTQSRPIRFSHNDRDSAKRYRFNQPAKITLYFTLQVNETIWQPKVVWTENCSVDKANAVKAKAWCSQKGETRYVVKDGKRYPITLPCWQESEQWVVSERDDNTCGAGRKTRIAVKGHASVCRKSAIYVSRNR
SIO_010081: E3U36_RS12170
subclass of: SO_0000673
so part of: E3U36_RS12170
location: complement(2219..2791)
location: region:2219-2791:-1
so has part: feature:2219-2791:-1:exon

WP_180817676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2219-2791:-1:exon

E3U36_RS12175
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12175
old locus tag: E3U36_12050
so part of: sequence
location: complement(2918..3358)
location: region:2918-3358:-1
so has part: feature:2918-3358:-1:exon
subclass of: SO_0000010

position:2918:-1
position: 2918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3358:-1
position: 3358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2918-3358:-1:exon

E3U36_RS12175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12175
old locus tag: E3U36_12050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMNKILTVPLLMFAISAFDNDMDNAAKEGYDLAEQTQKQAESTLNDFQPQKELPNFTANPNEADFYQDASKIGNAANQSLNDSDLGQLAVETYINNPKDKIDWQSDMVKNSQTIQENAEGITAGSAEQCSKKSISQSSFKEHVCER
SIO_010081: E3U36_RS12175
subclass of: SO_0000673
so part of: E3U36_RS12175
location: complement(2918..3358)
location: region:2918-3358:-1
so has part: feature:2918-3358:-1:exon

WP_238337576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2918-3358:-1:exon

E3U36_RS12180
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12180
old locus tag: E3U36_12055
so part of: sequence
location: complement(3348..3632)
location: region:3348-3632:-1
so has part: feature:3348-3632:-1:exon
subclass of: SO_0000010

position:3348:-1
position: 3348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3632:-1
position: 3632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3348-3632:-1:exon

E3U36_RS12180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12180
old locus tag: E3U36_12055
inference: COORDINATES: protein motif:HMM:NF021209.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC family F-type conjugative pilus assembly protein
translation: MPFLKSAQAKQIPVYFNGLIDNSMEKTARYLLNLIQKYQLAGIQVDPLRFDYYGINQVPALVKRCGKTFDVVYGSVALEEGLTQISRHGLCIDE
SIO_010081: E3U36_RS12180
subclass of: SO_0000673
so part of: E3U36_RS12180
location: complement(3348..3632)
location: region:3348-3632:-1
so has part: feature:3348-3632:-1:exon

WP_238337577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3348-3632:-1:exon

E3U36_RS12185
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: traU
locus tag: E3U36_RS12185
old locus tag: E3U36_12060
pseudo: true
so part of: sequence
location: complement(3781..4771)
location: region:3781-4771:-1
so has part: feature:3781-4771:-1:exon
subclass of: SO_0000010

position:3781:-1
position: 3781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4771:-1
position: 4771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781-4771:-1:exon

E3U36_RS12185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: traU
locus tag: E3U36_RS12185
old locus tag: E3U36_12060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004150659.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: conjugal transfer pilus assembly protein TraU
SIO_010081: E3U36_RS12185
subclass of: SO_0000673
so part of: E3U36_RS12185
location: complement(3781..4771)
location: region:3781-4771:-1
so has part: feature:3781-4771:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3781-4771:-1:exon

E3U36_RS12190
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12190
old locus tag: E3U36_12065
so part of: sequence
location: complement(4768..4983)
location: region:4768-4983:-1
so has part: feature:4768-4983:-1:exon
subclass of: SO_0000010

position:4768:-1
position: 4768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4983:-1
position: 4983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4768-4983:-1:exon

E3U36_RS12190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12190
old locus tag: E3U36_12065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDYQLRNSSQKRLAIGVVTCVVITILSLGMCYRLLMQNRELTFPLLNNHQTIIAPMFDHEGFSFYGTRGDE
SIO_010081: E3U36_RS12190
subclass of: SO_0000673
so part of: E3U36_RS12190
location: complement(4768..4983)
location: region:4768-4983:-1
so has part: feature:4768-4983:-1:exon

WP_180817678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4768-4983:-1:exon

E3U36_RS12195
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: traL
locus tag: E3U36_RS12195
old locus tag: E3U36_12070
so part of: sequence
location: complement(4993..5289)
location: region:4993-5289:-1
so has part: feature:4993-5289:-1:exon
subclass of: SO_0000010

position:4993:-1
position: 4993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5289:-1
position: 5289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4993-5289:-1:exon

E3U36_RS12195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: traL
locus tag: E3U36_RS12195
old locus tag: E3U36_12070
inference: COORDINATES: protein motif:HMM:TIGR02762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system protein TraL
translation: MDAASRYQFPTTITHQRRFCWLPMDEVVVYFPLLGCAIFVNMWIFSPALAVAFVGLRRLKQDKGSSYLLGLAYWCLPTSIMRFFITVLPESFTRYWIA
SIO_010081: E3U36_RS12195
subclass of: SO_0000673
so part of: E3U36_RS12195
location: complement(4993..5289)
location: region:4993-5289:-1
so has part: feature:4993-5289:-1:exon

WP_180817679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4993-5289:-1:exon

E3U36_RS12200
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12200
old locus tag: E3U36_12075
so part of: sequence
location: complement(5290..5643)
location: region:5290-5643:-1
so has part: feature:5290-5643:-1:exon
subclass of: SO_0000010

position:5290:-1
position: 5290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5643:-1
position: 5643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5290-5643:-1:exon

E3U36_RS12200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12200
old locus tag: E3U36_12075
inference: COORDINATES: protein motif:HMM:NF017337.2
GO component: GO:0005576 - extracellular region [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system pilin TraA
translation: MNGKVTSCLKNPFTVGAVAIRKVLKQQKSLFTLTFFGLLMFIPAMQVYADPPTTGDLFSDGKEVVKSTFGKGSTVVWILYVLEILAAIFAYVKTKNLSVFGGIAAVIVFVNVVFGLI
SIO_010081: E3U36_RS12200
subclass of: SO_0000673
so part of: E3U36_RS12200
location: complement(5290..5643)
location: region:5290-5643:-1
so has part: feature:5290-5643:-1:exon

WP_180817680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5290-5643:-1:exon

E3U36_RS12205
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12205
old locus tag: E3U36_12080
so part of: sequence
location: complement(5755..6015)
location: region:5755-6015:-1
so has part: feature:5755-6015:-1:exon
subclass of: SO_0000010

position:5755:-1
position: 5755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6015:-1
position: 6015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5755-6015:-1:exon

E3U36_RS12205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12205
old locus tag: E3U36_12080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3408 domain-containing protein
translation: MSTKSDAGKELNMFKGLSRRGKNIYIGAELRDRLDKIVLDIGHHVGRPVTVSEFIRYSVEKYGDEVRDRLKEFLGSAEERKESGEI
SIO_010081: E3U36_RS12205
subclass of: SO_0000673
so part of: E3U36_RS12205
location: complement(5755..6015)
location: region:5755-6015:-1
so has part: feature:5755-6015:-1:exon

WP_238337578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5755-6015:-1:exon

E3U36_RS12210
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12210
old locus tag: E3U36_12085
so part of: sequence
location: complement(6171..6488)
location: region:6171-6488:-1
so has part: feature:6171-6488:-1:exon
subclass of: SO_0000010

position:6171:-1
position: 6171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6488:-1
position: 6488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6171-6488:-1:exon

E3U36_RS12210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12210
old locus tag: E3U36_12085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLEIHEFCKHATVPCGFADSEGEINAKAKMVDFLGLNKDAPEMVALLEKIGTEKSPFYVISNLAFDYKKPPKLWQIDFIPLFSQENGYLGTFFHAYEFLFLSTL
SIO_010081: E3U36_RS12210
subclass of: SO_0000673
so part of: E3U36_RS12210
location: complement(6171..6488)
location: region:6171-6488:-1
so has part: feature:6171-6488:-1:exon

WP_180817681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6171-6488:-1:exon

E3U36_RS12215
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: trfA
locus tag: E3U36_RS12215
old locus tag: E3U36_12090
so part of: sequence
location: complement(6695..7552)
location: region:6695-7552:-1
so has part: feature:6695-7552:-1:exon
subclass of: SO_0000010

position:6695:-1
position: 6695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7552:-1
position: 7552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6695-7552:-1:exon

E3U36_RS12215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: trfA
locus tag: E3U36_RS12215
old locus tag: E3U36_12090
inference: COORDINATES: protein motif:HMM:NF018714.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
translation: MNNSLIERVKFLRQRSLERNKLKNSELDKIPTINELDEKDKLDPNVVYLPISKKSTIPTPNTVLRSALFGVVGKGKRILEKGVLKATVNGYSIKYSGEQLDQSDLDVWLECIRRSQSCQLGTIVRFAANDFLRSIDRKTGKSQHEWLKTSLKRMRFTDIEISDGRFMYCGSLLHEYYQDKIKGDNCLIINDKIIDCFENSSWTAINHALRLALRGKQLTQWLYGFYSSHFKPFPIKIETLKLISGSNSETKEFRRMIRKSLAELSSVTGWSYKIDEKDKVIVNKK
SIO_010081: E3U36_RS12215
subclass of: SO_0000673
so part of: E3U36_RS12215
location: complement(6695..7552)
location: region:6695-7552:-1
so has part: feature:6695-7552:-1:exon

WP_180817682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6695-7552:-1:exon

E3U36_RS12220
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12220
old locus tag: E3U36_12095
pseudo: true
so part of: sequence
location: 8620..>8817
location: region:8620-8817:1
so has part: feature:8620-8817:1:exon
subclass of: SO_0000010

position:8620:1
position: 8620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8817:1
position: 8817
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8620-8817:1:exon

E3U36_RS12220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12220
old locus tag: E3U36_12095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003869740.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0030261 - chromosome condensation [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: HU family DNA-binding protein
SIO_010081: E3U36_RS12220
subclass of: SO_0000673
so part of: E3U36_RS12220
location: 8620..>8817
location: region:8620-8817:1
so has part: feature:8620-8817:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8620-8817:1:exon

E3U36_RS12225
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12225
so part of: sequence
location: 9481..9651
location: region:9481-9651:1
so has part: feature:9481-9651:1:exon
subclass of: SO_0000010

position:9481:1
position: 9481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9651:1
position: 9651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9481-9651:1:exon

E3U36_RS12225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MINPTPEQQDVIDWQGDKLVVNAFAGTGKTSNLVKYAEKHPDLRMLYIAFNRSVME
SIO_010081: E3U36_RS12225
subclass of: SO_0000673
so part of: E3U36_RS12225
location: 9481..9651
location: region:9481-9651:1
so has part: feature:9481-9651:1:exon

WP_180817684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9481-9651:1:exon

E3U36_RS12230
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12230
old locus tag: E3U36_12100
so part of: sequence
location: 9676..10413
location: region:9676-10413:1
so has part: feature:9676-10413:1:exon
subclass of: SO_0000010

position:9676:1
position: 9676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10413:1
position: 10413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9676-10413:1:exon

E3U36_RS12230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12230
old locus tag: E3U36_12100
inference: COORDINATES: protein motif:HMM:NF012789.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UvrD-helicase domain-containing protein
translation: MLCKTSHQLAWSGFGRNYANRLTNSLRLFDIANATQSDDWLYVKTIQDTLKNFMCSVDNQIMLRHCPSILMGEVKKSFTANEVVRQSEQLWHRMIDLADNFPVIHDMCLKLYQLSQPNLYHRFDVILFDEAQDANLVTHDIVFRQTTKLVMVGDAHQQIYRFRGAVDALNAPLLSDADRLWLTHSFSFGDCVADIAHALLAMNGETHQVVGRGEKDEIFINIPKQGFPQRSILSRTVAGVIGSAL
SIO_010081: E3U36_RS12230
subclass of: SO_0000673
so part of: E3U36_RS12230
location: 9676..10413
location: region:9676-10413:1
so has part: feature:9676-10413:1:exon

WP_180817685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9676-10413:1:exon

E3U36_RS12235
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12235
old locus tag: E3U36_12105
so part of: sequence
location: 10573..10932
location: region:10573-10932:1
so has part: feature:10573-10932:1:exon
subclass of: SO_0000010

position:10573:1
position: 10573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10932:1
position: 10932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10573-10932:1:exon

E3U36_RS12235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12235
old locus tag: E3U36_12105
inference: COORDINATES: protein motif:HMM:NF024754.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exonuclease
translation: MANASGDQEILQYIKIIKKFTPLPKKVDVLRKRTVETEEEASITVTNDHRAKGLEWDIVEINNDFPNNLFDPNMDKTAFRDEVNLMYVSATRAKKTLIINKLLVNILAKADENEKTAQA
SIO_010081: E3U36_RS12235
subclass of: SO_0000673
so part of: E3U36_RS12235
location: 10573..10932
location: region:10573-10932:1
so has part: feature:10573-10932:1:exon

WP_180817686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10573-10932:1:exon

E3U36_RS13075
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS13075
old locus tag: E3U36_12110
pseudo: true
so part of: sequence
location: 11153..12128
location: region:11153-12128:1
so has part: feature:11153-12128:1:exon
subclass of: SO_0000010

position:11153:1
position: 11153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12128:1
position: 12128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11153-12128:1:exon

E3U36_RS13075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS13075
old locus tag: E3U36_12110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873870.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
SIO_010081: E3U36_RS13075
subclass of: SO_0000673
so part of: E3U36_RS13075
location: 11153..12128
location: region:11153-12128:1
so has part: feature:11153-12128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11153-12128:1:exon

E3U36_RS12245
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12245
old locus tag: E3U36_12120
so part of: sequence
location: 12444..12683
location: region:12444-12683:1
so has part: feature:12444-12683:1:exon
subclass of: SO_0000010

position:12444:1
position: 12444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12683:1
position: 12683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12444-12683:1:exon

E3U36_RS12245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12245
old locus tag: E3U36_12120
inference: COORDINATES: protein motif:HMM:NF016255.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ProQ/FINO family protein
translation: MKIDIQQDMWQEVKEKGLPIARRRLRACLGSIGHHVDHRVLIQLGAFRYDKDGQIVGDITQADVEDNLQRLARRNKKKI
SIO_010081: E3U36_RS12245
subclass of: SO_0000673
so part of: E3U36_RS12245
location: 12444..12683
location: region:12444-12683:1
so has part: feature:12444-12683:1:exon

WP_238337570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12444-12683:1:exon

E3U36_RS12250
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12250
old locus tag: E3U36_12125
so part of: sequence
location: complement(12795..13718)
location: region:12795-13718:-1
so has part: feature:12795-13718:-1:exon
subclass of: SO_0000010

position:12795:-1
position: 12795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13718:-1
position: 13718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12795-13718:-1:exon

E3U36_RS12250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12250
old locus tag: E3U36_12125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032491235.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MAKQKFKITNWPAYNKALRQRGSLTVWLDESAIAGWTDSSSPEGRGRPLYYSDMAVTTVLMMKRVFNLSLRALQGFVDSIFKLMSLPLCCPDYSLVSRRAKSVNISIKTPTRGEISHLVIDSTGLKVFGEGEWKVRQHGADRRRVWRKLHLAADSVTHEIICADLSLSGTTDAQALPGLINQTHRKIREVLADGAYDACYCHDALLRKKIRPLIPPRSGAKYWPDXYHERNHAVANQRLSRSNDMWKKKVGYHRRSVAETAMFRIKTLLGGHLSLRDYEAQVGEAMAMVKALNRMTLLGMPHSVRIG
SIO_010081: E3U36_RS12250
subclass of: SO_0000673
so part of: E3U36_RS12250
location: complement(12795..13718)
location: region:12795-13718:-1
so has part: feature:12795-13718:-1:exon

WP_180817665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12795-13718:-1:exon

E3U36_RS13080
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: parM
locus tag: E3U36_RS13080
so part of: sequence
location: 14007..14303
location: region:14007-14303:1
so has part: feature:14007-14303:1:exon
subclass of: SO_0000010

position:14007:1
position: 14007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14303:1
position: 14303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14007-14303:1:exon

E3U36_RS13080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: parM
locus tag: E3U36_RS13080
inference: COORDINATES: protein motif:HMM:NF018148.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid segregation protein ParM
translation: MKIACDDDYTSVKLAWLENEKIVTHISPNSFKEGWNTEILSNNPLFNYLVDDKKYTFDIGSSSVIETTHVSYQYSALNRLAIHHALLTSGVYSLKILS
SIO_010081: E3U36_RS13080
subclass of: SO_0000673
so part of: E3U36_RS13080
location: 14007..14303
location: region:14007-14303:1
so has part: feature:14007-14303:1:exon

WP_255479112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14007-14303:1:exon

E3U36_RS13085
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: parM
locus tag: E3U36_RS13085
so part of: sequence
location: 14425..14910
location: region:14425-14910:1
so has part: feature:14425-14910:1:exon
subclass of: SO_0000010

position:14425:1
position: 14425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14910:1
position: 14910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14425-14910:1:exon

E3U36_RS13085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: parM
locus tag: E3U36_RS13085
inference: COORDINATES: protein motif:HMM:NF018148.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid segregation protein ParM
translation: MVNVIVMPESIPAVREVLIKDNISYLERSLIVDLVGTTLDCAVIQGLLDNISEIKGNSEIGVSKLTKSVINALYIASSPSSYYIADEVIKNVNNMALLKQVIHDPKKITHITEVVIEGSENLADRVISEIEKINNINRIYLTGGVLKLFILMLTIILKIIR
SIO_010081: E3U36_RS13085
subclass of: SO_0000673
so part of: E3U36_RS13085
location: 14425..14910
location: region:14425-14910:1
so has part: feature:14425-14910:1:exon

WP_255479116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14425-14910:1:exon

E3U36_RS12265
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12265
old locus tag: E3U36_12140
so part of: sequence
location: 15380..15553
location: region:15380-15553:1
so has part: feature:15380-15553:1:exon
subclass of: SO_0000010

position:15380:1
position: 15380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15553:1
position: 15553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15380-15553:1:exon

E3U36_RS12265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12265
old locus tag: E3U36_12140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011279233.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rop family plasmid primer RNA-binding protein
translation: MNKQELSALNMAGFIKSQTLILFKLNQLNLYDCADECEDLHDMAEALYLNLKKTLER
SIO_010081: E3U36_RS12265
subclass of: SO_0000673
so part of: E3U36_RS12265
location: 15380..15553
location: region:15380-15553:1
so has part: feature:15380-15553:1:exon

WP_180817666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15380-15553:1:exon

E3U36_RS12270
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12270
old locus tag: E3U36_12145
pseudo: true
so part of: sequence
location: <15623..16074
location: region:15623-16074:1
so has part: feature:15623-16074:1:exon
subclass of: SO_0000010

position:15623:1
position: 15623
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16074:1
position: 16074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15623-16074:1:exon

E3U36_RS12270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12270
old locus tag: E3U36_12145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013036369.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA methyltransferase
SIO_010081: E3U36_RS12270
subclass of: SO_0000673
so part of: E3U36_RS12270
location: <15623..16074
location: region:15623-16074:1
so has part: feature:15623-16074:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15623-16074:1:exon

E3U36_RS12275
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12275
old locus tag: E3U36_12150
so part of: sequence
location: 16090..16314
location: region:16090-16314:1
so has part: feature:16090-16314:1:exon
subclass of: SO_0000010

position:16090:1
position: 16090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16314:1
position: 16314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16090-16314:1:exon

E3U36_RS12275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12275
old locus tag: E3U36_12150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNYSGHEVLRKEVALLVEKMDMFYMQLFEFERKYLYNADELTELLAAQLIKPIKNQMQEIYQPVIALMLFLNQN
SIO_010081: E3U36_RS12275
subclass of: SO_0000673
so part of: E3U36_RS12275
location: 16090..16314
location: region:16090-16314:1
so has part: feature:16090-16314:1:exon

WP_180817667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16090-16314:1:exon

E3U36_RS13090
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS13090
so part of: sequence
location: 16326..16457
location: region:16326-16457:1
so has part: feature:16326-16457:1:exon
subclass of: SO_0000010

position:16326:1
position: 16326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16457:1
position: 16457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16326-16457:1:exon

E3U36_RS13090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS13090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFEFSHKRPQDIDDNMIKAFGYQAVKERISEVDYKVSHFFRQK
SIO_010081: E3U36_RS13090
subclass of: SO_0000673
so part of: E3U36_RS13090
location: 16326..16457
location: region:16326-16457:1
so has part: feature:16326-16457:1:exon

WP_255479113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16326-16457:1:exon

E3U36_RS12280
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12280
old locus tag: E3U36_12155
so part of: sequence
location: complement(16507..16995)
location: region:16507-16995:-1
so has part: feature:16507-16995:-1:exon
subclass of: SO_0000010

position:16507:-1
position: 16507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16995:-1
position: 16995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16507-16995:-1:exon

E3U36_RS12280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12280
old locus tag: E3U36_12155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004963009.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Hsp20 family protein
translation: MAYRSFSLIPMLSDNLLSDRFTQMDKLFSRITGEKPLSDAPSYNLYQKDKENLELTVAVPGYKQHELDISVLNNKLIIIGKSETEKEESNHDSKTEKWLHKGIEKKGFSMSFDLDHRIRIQNANLADGLLTLTFSYEIPEEQKPQKIAIGQNSKPEVIEHKK
SIO_010081: E3U36_RS12280
subclass of: SO_0000673
so part of: E3U36_RS12280
location: complement(16507..16995)
location: region:16507-16995:-1
so has part: feature:16507-16995:-1:exon

WP_180817668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16507-16995:-1:exon

E3U36_RS12285
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12285
old locus tag: E3U36_12160
pseudo: true
so part of: sequence
location: 17157..18084
location: region:17157-18084:1
so has part: feature:17157-18084:1:exon
subclass of: SO_0000010

position:17157:1
position: 17157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18084:1
position: 18084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17157-18084:1:exon

E3U36_RS12285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12285
old locus tag: E3U36_12160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001118639.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: E3U36_RS12285
subclass of: SO_0000673
so part of: E3U36_RS12285
location: 17157..18084
location: region:17157-18084:1
so has part: feature:17157-18084:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17157-18084:1:exon

E3U36_RS12290
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
gene: psiE
locus tag: E3U36_RS12290
old locus tag: E3U36_12165
so part of: sequence
location: 18195..18599
location: region:18195-18599:1
so has part: feature:18195-18599:1:exon
subclass of: SO_0000010

position:18195:1
position: 18195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18599:1
position: 18599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18195-18599:1:exon

E3U36_RS12290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
gene: psiE
locus tag: E3U36_RS12290
old locus tag: E3U36_12165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012847085.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphate-starvation-inducible protein PsiE
translation: MCGLSQSILISRILQWIISFSLLLLAVILIIFLMKEKFTLALLLFNSANPAQTYLLLESIVNYFLYFEFIALIIKYFNSLYHFPLQYFVYIGITAIIRLIIVEHKDPFSVLIYAISILFMVLALYLANAKRLVE
SIO_010081: E3U36_RS12290
subclass of: SO_0000673
so part of: E3U36_RS12290
location: 18195..18599
location: region:18195-18599:1
so has part: feature:18195-18599:1:exon

WP_180817690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18195-18599:1:exon

E3U36_RS12295
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12295
old locus tag: E3U36_12170
so part of: sequence
location: complement(18885..19808)
location: region:18885-19808:-1
so has part: feature:18885-19808:-1:exon
subclass of: SO_0000010

position:18885:-1
position: 18885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19808:-1
position: 19808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18885-19808:-1:exon

E3U36_RS12295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12295
old locus tag: E3U36_12170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032491235.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MAKQKFKITNWPAYNKALRQRGSLTVWLDESAIAGWTDSSSPEGRGRPLYYSDMAVTTVLMMKRVFNLSLRALQGFVYSIFKLMSLPLCCPDYSLVSRRAKSVNISIKTPTRGEISHLVIDSTGLKVFGEGEWKVRQHGADRRRVWRKLHLAADSVTHEIICADLSLSGTTDAQALPGLINQTHRKIREVSADGAYHACYCHDALLRKKIRPLIPPRSGAKYWPDKYHERNHAVANQRLSRSNDMWKKKVGYHRRSVAETAMFRIKTLLGGHLSLRDYEAQVGEAMAMVKALNRMTLLGMPHSFRIG
SIO_010081: E3U36_RS12295
subclass of: SO_0000673
so part of: E3U36_RS12295
location: complement(18885..19808)
location: region:18885-19808:-1
so has part: feature:18885-19808:-1:exon

WP_180817669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18885-19808:-1:exon

E3U36_RS12300
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12300
old locus tag: E3U36_12175
so part of: sequence
location: 19883..20098
location: region:19883-20098:1
so has part: feature:19883-20098:1:exon
subclass of: SO_0000010

position:19883:1
position: 19883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20098:1
position: 20098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19883-20098:1:exon

E3U36_RS12300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12300
old locus tag: E3U36_12175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002212220.1
GO component: GO:0005829 - cytosol [Evidence IEA]
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cold-shock protein
translation: MSSINTGIVNWFNADKGFGFISPKNGSQDVFVHYSAIQCNDYKTLYEGQEVNFSVESGHKGPSATNVIALC
SIO_010081: E3U36_RS12300
subclass of: SO_0000673
so part of: E3U36_RS12300
location: 19883..20098
location: region:19883-20098:1
so has part: feature:19883-20098:1:exon

WP_180817691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19883-20098:1:exon

E3U36_RS12305
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12305
old locus tag: E3U36_12180
so part of: sequence
location: complement(20173..20637)
location: region:20173-20637:-1
so has part: feature:20173-20637:-1:exon
subclass of: SO_0000010

position:20173:-1
position: 20173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20637:-1
position: 20637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20173-20637:-1:exon

E3U36_RS12305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12305
old locus tag: E3U36_12180
inference: COORDINATES: protein motif:HMM:NF018726.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer relaxase/helicase TraI
translation: MDNTYVELSRAKQHVQLYLSDGNTWMKNLTKNSVDRLTAYDILNKQEDQLARNEIRIWDNSKEIGNTKLAQKIDPTLLEVARFSHHDRPELLLAVTNEHGIHRGNLHIPLGIYTGKTDLEEEPPKLEKENDESNISYHHENEQKQKIKEKEYGD
SIO_010081: E3U36_RS12305
subclass of: SO_0000673
so part of: E3U36_RS12305
location: complement(20173..20637)
location: region:20173-20637:-1
so has part: feature:20173-20637:-1:exon

WP_238337571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20173-20637:-1:exon

E3U36_RS12310
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12310
old locus tag: E3U36_12185
so part of: sequence
location: complement(20680..21168)
location: region:20680-21168:-1
so has part: feature:20680-21168:-1:exon
subclass of: SO_0000010

position:20680:-1
position: 20680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21168:-1
position: 21168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20680-21168:-1:exon

E3U36_RS12310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12310
old locus tag: E3U36_12185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMQSQQMLGKSASIPVLQRINHQKSDLKDRQFWQNQLGHIAKINQHYFEITEVSKEGIVSLVNRENNQEKYLLPLEVNPAVVALFEDKTSEVSEGEKIRLTTTDKDRNIANNDRGIIKRIDDDKLHIELNGKLVTYQPQKEYADRHLDYTYAITSYASQGAS
SIO_010081: E3U36_RS12310
subclass of: SO_0000673
so part of: E3U36_RS12310
location: complement(20680..21168)
location: region:20680-21168:-1
so has part: feature:20680-21168:-1:exon

WP_180817671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20680-21168:-1:exon

E3U36_RS12865
type: Gene
subclass of: SO_0000704
RO_0002162: 1231049
locus tag: E3U36_RS12865
so part of: sequence
location: 21339..21497
location: region:21339-21497:1
so has part: feature:21339-21497:1:exon
subclass of: SO_0000010

position:21339:1
position: 21339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21497:1
position: 21497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21339-21497:1:exon

E3U36_RS12865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1231049
locus tag: E3U36_RS12865
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: transposase
translation: MESAIAGWTDSSSPEGRGRPLYYSDMAVTTVLMMKRVFNLSLGHYRASLIRF
SIO_010081: E3U36_RS12865
subclass of: SO_0000673
so part of: E3U36_RS12865
location: 21339..21497
location: region:21339-21497:1
so has part: feature:21339-21497:1:exon

WP_238337572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21339-21497:1:exon