Salimicrobium jeotgali strain MJ3 plasmid pSJ52, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Salimicrobium.
Salimicrobium jeotgali MJ3, isolated from Myulchi jeot, a traditional Korean fermented seafood
Submitted (22-JUN-2015) Life Science, Chung-Ang University, 104-603, Chungang Univ, Seoul 156-756, South Korea
Submitted (01-MAY-2015) Life Science, Chung-Ang University, 104-603, Chungang Univ, Seoul 156-756, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP011362.2.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 291.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 01:03:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,842\nCDSs (total) :: 2,747\nGenes (coding) :: 2,724\nCDSs (with protein) :: 2,724\nGenes (RNA) :: 95\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 8 of 23\nPseudo Genes (incomplete) :: 12 of 23\nPseudo Genes (internal stop) :: 8 of 23\nPseudo Genes (multiple problems) :: 5 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
fermented anchovy (Engraulis japonica) food
COORDINATES: similar to AA sequence:RefSeq:WP_008587656.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008587654.1
COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039769.1
COORDINATES: protein motif:HMM:NF017760.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025114.2
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612034.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008591948.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008591949.1
COORDINATES: similar to AA sequence:RefSeq:WP_008592004.1
COORDINATES: similar to AA sequence:RefSeq:WP_016107348.1
COORDINATES: similar to AA sequence:RefSeq:WP_006830816.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010648716.1
COORDINATES: similar to AA sequence:RefSeq:WP_011459363.1
COORDINATES: similar to AA sequence:RefSeq:WP_014642615.1
COORDINATES: protein motif:HMM:NF012675.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF024249.2
COORDINATES: similar to AA sequence:RefSeq:WP_018922694.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008635946.1
COORDINATES: similar to AA sequence:RefSeq:WP_019380318.1
COORDINATES: similar to AA sequence:RefSeq:WP_008591590.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003349919.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009792073.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002580211.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF014839.2
COORDINATES: similar to AA sequence:RefSeq:WP_010531912.1
COORDINATES: similar to AA sequence:RefSeq:WP_006835912.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011247655.1
COORDINATES: similar to AA sequence:RefSeq:WP_000776354.1
COORDINATES: protein motif:HMM:NF003462.0
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010896492.1
COORDINATES: similar to AA sequence:RefSeq:WP_016898482.1
COORDINATES: similar to AA sequence:RefSeq:WP_003474165.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154618.1
COORDINATES: similar to AA sequence:RefSeq:WP_003474167.1
COORDINATES: similar to AA sequence:RefSeq:WP_017358895.1
aureocin A53 family class IId bacteriocin
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: similar to AA sequence:RefSeq:WP_014305152.1