Salimicrobium jeotgali strain MJ3 plasmid pSJ52, complete sequence.
type: Entry
definition: Salimicrobium jeotgali strain MJ3 plasmid pSJ52, complete sequence.
sequence version: NZ_CP011362.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP011362.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03571250
keyword: RefSeq
source: Salimicrobium jeotgali
organism: Salimicrobium jeotgali
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Salimicrobium.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP011362.2.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 291.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 01:03:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,842\nCDSs (total) :: 2,747\nGenes (coding) :: 2,724\nCDSs (with protein) :: 2,724\nGenes (RNA) :: 95\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 8 of 23\nPseudo Genes (incomplete) :: 12 of 23\nPseudo Genes (internal stop) :: 8 of 23\nPseudo Genes (multiple problems) :: 5 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 52672
topology: circular
so has quality: SO_0000988
location: 1..52672
location: region:1-52672:1
RO_0002162: 1230341

NZ_CP011362
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03571250
type: BioSample
SIO_000068: biosample

1
title: Salimicrobium jeotgali MJ3, isolated from Myulchi jeot, a traditional Korean fermented seafood
author: Kim, K.H.
author: Jeon, C.O.
author: Jin, H.M.
journal: Unpublished

2
title: Direct Submission
author: Kim, K.H.
author: Jeon, C.O.
author: Jin, H.M.
journal: Submitted (22-JUN-2015) Life Science, Chung-Ang University, 104-603, Chungang Univ, Seoul 156-756, South Korea
comments: Sequence update by submitter

3
title: Direct Submission
author: Kim, K.H.
author: Jeon, C.O.
author: Jin, H.M.
journal: Submitted (01-MAY-2015) Life Science, Chung-Ang University, 104-603, Chungang Univ, Seoul 156-756, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52672:1
position: 52672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-52672:1:source
so part of: sequence
organism: Salimicrobium jeotgali
mol type: genomic DNA
strain: MJ3
isolation source: fermented anchovy (Engraulis japonica) food
culture collection: KACC:16972
type material: type strain of Salimicrobium jeotgali
plasmid: pSJ52
country: South Korea: Seoul
collection date: 2012-02

1230341
type: Taxonomy
SIO_000068: taxonomy

AAV35_RS13840
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13840
old locus tag: AAV35_013730
so part of: sequence
location: complement(332..631)
location: region:332-631:-1
so has part: feature:332-631:-1:exon
subclass of: SO_0000010

position:332:-1
position: 332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:631:-1
position: 631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332-631:-1:exon

AAV35_RS13840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13840
old locus tag: AAV35_013730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008587656.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKDLTRTEDIVKELPETEVFFHGIGAILGSAVFSARMEASLTQKELAEKAGVDLKTVTRAEGGSGGLEVRMYDKLFRALGISPREYATLFEKAQQSISE
SIO_010081: AAV35_RS13840
subclass of: SO_0000673
so part of: AAV35_RS13840
location: complement(332..631)
location: region:332-631:-1
so has part: feature:332-631:-1:exon

WP_008591922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:332-631:-1:exon

AAV35_RS13845
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13845
old locus tag: AAV35_013735
so part of: sequence
location: complement(636..899)
location: region:636-899:-1
so has part: feature:636-899:-1:exon
subclass of: SO_0000010

position:636:-1
position: 636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:899:-1
position: 899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:636-899:-1:exon

AAV35_RS13845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13845
old locus tag: AAV35_013735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008587654.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYIYQRISYDGSSWRSKSIDTESLFDEDPYRNQTLPGKEVRFTHEPVDGDYDRLCEALSGEVVTYHSGESRDVFSVKDTYTKILKRR
SIO_010081: AAV35_RS13845
subclass of: SO_0000673
so part of: AAV35_RS13845
location: complement(636..899)
location: region:636-899:-1
so has part: feature:636-899:-1:exon

WP_008591923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:636-899:-1:exon

AAV35_RS13850
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13850
old locus tag: AAV35_013745
pseudo: true
so part of: sequence
location: 1425..4386
location: region:1425-4386:1
so has part: feature:1425-4386:1:exon
subclass of: SO_0000010

position:1425:1
position: 1425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4386:1
position: 4386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1425-4386:1:exon

AAV35_RS13850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13850
old locus tag: AAV35_013745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: AAV35_RS13850
subclass of: SO_0000673
so part of: AAV35_RS13850
location: 1425..4386
location: region:1425-4386:1
so has part: feature:1425-4386:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1425-4386:1:exon

AAV35_RS13860
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13860
old locus tag: AAV35_013750
so part of: sequence
location: complement(4372..4773)
location: region:4372-4773:-1
so has part: feature:4372-4773:-1:exon
subclass of: SO_0000010

position:4372:-1
position: 4372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4773:-1
position: 4773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4372-4773:-1:exon

AAV35_RS13860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13860
old locus tag: AAV35_013750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREHLNKRVEYFGMDGMAIGLLVMVISLPVTTGIKSIEHFEVIKELMDTLIASAVAALLTMVTFGIWKAVLKEQAASVFMTVAVGFYIFSIMLFGVSDLSDMSYRGSVRKMRIYNVKCIFPSAILFSTKLREF
SIO_010081: AAV35_RS13860
subclass of: SO_0000673
so part of: AAV35_RS13860
location: complement(4372..4773)
location: region:4372-4773:-1
so has part: feature:4372-4773:-1:exon

WP_008591929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4372-4773:-1:exon

AAV35_RS13870
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13870
old locus tag: AAV35_013760
so part of: sequence
location: complement(5028..5417)
location: region:5028-5417:-1
so has part: feature:5028-5417:-1:exon
subclass of: SO_0000010

position:5028:-1
position: 5028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5417:-1
position: 5417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5028-5417:-1:exon

AAV35_RS13870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13870
old locus tag: AAV35_013760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKTMKKAGKGLRLGFNLEESRFQESVVDIPAEADYQTYNSIIGSQYIDIVRFNDKYDIVVGDEGLFVSRNPVIRVHTPYEDVELSGNLLFLKRVDTEEGVDSSGMTPGEILELLLELNGNVEIIGVCK
SIO_010081: AAV35_RS13870
subclass of: SO_0000673
so part of: AAV35_RS13870
location: complement(5028..5417)
location: region:5028-5417:-1
so has part: feature:5028-5417:-1:exon

WP_008591934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5028-5417:-1:exon

AAV35_RS13875
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13875
old locus tag: AAV35_013765
so part of: sequence
location: complement(5975..6730)
location: region:5975-6730:-1
so has part: feature:5975-6730:-1:exon
subclass of: SO_0000010

position:5975:-1
position: 5975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6730:-1
position: 6730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5975-6730:-1:exon

AAV35_RS13875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13875
old locus tag: AAV35_013765
EC number: 2.3.1.-
inference: COORDINATES: protein motif:HMM:NF012792.2
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MRQLFNSKIINGSPDYLIIEEIGELKGTHEFEQLIAETMKFVVNKNIKKVSIVLNNQEALNTSYLEYLEKRGFFQHEIQYFYYRNLEQLHISNELDSISLSSLKWNDEYLFKKIWEQSMVYSLNAPSQTTIERQFEGMKSEIGNNYKGNCLTISKNNIPIGVTIPHIEQGKLDEGRIFYFGLLPEYRGKGLGRLIHKKSLQYLKQLKAGYYIGSTGHKNHIMQNVFKDNNCKFFDERITYQFLGNTADKKK
SIO_010081: AAV35_RS13875
subclass of: SO_0000673
so part of: AAV35_RS13875
location: complement(5975..6730)
location: region:5975-6730:-1
so has part: feature:5975-6730:-1:exon

WP_008591937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5975-6730:-1:exon

AAV35_RS13880
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13880
old locus tag: AAV35_013770
so part of: sequence
location: 6909..7451
location: region:6909-7451:1
so has part: feature:6909-7451:1:exon
subclass of: SO_0000010

position:6909:1
position: 6909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7451:1
position: 7451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6909-7451:1:exon

AAV35_RS13880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13880
old locus tag: AAV35_013770
inference: COORDINATES: protein motif:HMM:NF039769.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6423 family protein
translation: MRATDIHTTAAIDEKRRIVMLTGAIDASGYVINMRTPLPSAGEWTVVKAETNLSNHTWATWQMVLGENVSVAMDGDSPELLMSRNFENVRYIPEKNVVVYYGGKPVRPGETVLKFFKVHTKVPEILTAHPARIAPDNPDYDDVITGVQTNQHLPKMEIVPVVQNVNLPEVYNLENHAISQ
SIO_010081: AAV35_RS13880
subclass of: SO_0000673
so part of: AAV35_RS13880
location: 6909..7451
location: region:6909-7451:1
so has part: feature:6909-7451:1:exon

WP_008591938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6909-7451:1:exon

AAV35_RS13885
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13885
old locus tag: AAV35_013775
so part of: sequence
location: 7526..8761
location: region:7526-8761:1
so has part: feature:7526-8761:1:exon
subclass of: SO_0000010

position:7526:1
position: 7526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8761:1
position: 8761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7526-8761:1:exon

AAV35_RS13885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13885
old locus tag: AAV35_013775
inference: COORDINATES: protein motif:HMM:NF017760.2
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MIPKLLKVRTFRILWVGRFASIFGSRFLDFAFPWLVLEMTGSPLAAGIVLATEQVAPIVFALPAGIWIEKLPKKSTALVSETIRILIILSLIFLILTESLSVWAFMCIALILGCVEVFFGTSYKLFLLYAVGREHLREAYNLTEGADSIASAIGPAIAGIIFLNFGAEWAIAVTALGFVVSLLTIAIVKVKEPANEKESHQRLTFNFALIWKDLKEGITYISKTKFQSSFLLINIILGFCAMSSILLITILAQQNLGLNAGQAGSLLSAMGVGAIVGVLILQTLNKYSWKYVLTGALTLSSLGGIILAVASSYTVVLIGAFLLDCGLSISFVVHASTHQINTPNRLLARVNTASLSVDGVSRLGSRLYAGGLTQLFDVRTPLFIMGIILVFGAIVAFKTNEPDLSEEELSI
SIO_010081: AAV35_RS13885
subclass of: SO_0000673
so part of: AAV35_RS13885
location: 7526..8761
location: region:7526-8761:1
so has part: feature:7526-8761:1:exon

WP_008591939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7526-8761:1:exon

AAV35_RS13890
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13890
old locus tag: AAV35_013780
so part of: sequence
location: 8793..10166
location: region:8793-10166:1
so has part: feature:8793-10166:1:exon
subclass of: SO_0000010

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10166:1
position: 10166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8793-10166:1:exon

AAV35_RS13890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13890
old locus tag: AAV35_013780
inference: COORDINATES: protein motif:HMM:NF025114.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)-binding domain-containing protein
translation: MIYNSDCDTVGKLKFDLESFASLEHKRNPFKLELPSLKSNAHLPTEKKVVIIGSGLIGIGLAARASHLGFNNDLVILDKNKNFAQNFHSRTNQINQKVMRSPYTHHLAPNEDIGLADFGRLKSKWLTHAEKKGLELARKFERSLPALDIFMKHTEGVVRIHDLQEKAFQFNVESISRDDKANKWIIKNKNGKVIKSKYVILALGQGYNNDNIFKSIKASKRNSHRVVITGGGNTAGHLILDSIRKGHKVDWVIRDELRFLCSDVPHKYFREEGQFEFLSKSIEERKQLLDEKLRGSCMLEHFHLFKKFIQQGLLNVHQHTLIDSYQENDQGLISCKLSTGKTVTCCELIKAHGLKPNNLPNIDPPIKKFGDYPILNDQTLEAKNHPNLFVSSIHSSLSLGPAAKLIDGARLANEKIFKTILQKERKNNCETTHDYKIKRPMWGQITAVSKPTKVWRY
SIO_010081: AAV35_RS13890
subclass of: SO_0000673
so part of: AAV35_RS13890
location: 8793..10166
location: region:8793-10166:1
so has part: feature:8793-10166:1:exon

WP_008591941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8793-10166:1:exon

AAV35_RS13895
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13895
old locus tag: AAV35_013785
so part of: sequence
location: 10205..10552
location: region:10205-10552:1
so has part: feature:10205-10552:1:exon
subclass of: SO_0000010

position:10205:1
position: 10205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10552:1
position: 10552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10205-10552:1:exon

AAV35_RS13895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13895
old locus tag: AAV35_013785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFTLLFLDEKYLFTALGLSTMTEDIDEIIETTLVFSNQHSVKRINQIIEEKGKKVLEEISSKFESMGGNNKRTISDSRDFIRRNIPLIDQVCTSLGYRSEKIYALSLAMICRKL
SIO_010081: AAV35_RS13895
subclass of: SO_0000673
so part of: AAV35_RS13895
location: 10205..10552
location: region:10205-10552:1
so has part: feature:10205-10552:1:exon

WP_008591944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10205-10552:1:exon

AAV35_RS13900
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13900
old locus tag: AAV35_013790
pseudo: true
so part of: sequence
location: 10790..>11169
location: region:10790-11169:1
so has part: feature:10790-11169:1:exon
subclass of: SO_0000010

position:10790:1
position: 10790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11169:1
position: 11169
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10790-11169:1:exon

AAV35_RS13900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13900
old locus tag: AAV35_013790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612034.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: AAV35_RS13900
subclass of: SO_0000673
so part of: AAV35_RS13900
location: 10790..>11169
location: region:10790-11169:1
so has part: feature:10790-11169:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10790-11169:1:exon

AAV35_RS13905
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13905
old locus tag: AAV35_013795
so part of: sequence
location: complement(11294..11848)
location: region:11294-11848:-1
so has part: feature:11294-11848:-1:exon
subclass of: SO_0000010

position:11294:-1
position: 11294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11848:-1
position: 11848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11294-11848:-1:exon

AAV35_RS13905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13905
old locus tag: AAV35_013795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008591948.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MFIGYARVSTGLQNLDLQLHALTDYGCEKTFHDKMSGTKKQRPGLEEAIHYAREGDTIVVWRLDRLGRNMQDLIQLVNELNERGVAFHSLQENLTMDKSNATGQLMFHLFAAFAEFERNLIEERSAAGRTAARARGRLGGRPEKFGKKDIEMMRSLITNGTPIKDVAEKWGVSRTTIYRYLEKK
SIO_010081: AAV35_RS13905
subclass of: SO_0000673
so part of: AAV35_RS13905
location: complement(11294..11848)
location: region:11294-11848:-1
so has part: feature:11294-11848:-1:exon

WP_008591948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11294-11848:-1:exon

AAV35_RS13910
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13910
old locus tag: AAV35_013800
so part of: sequence
location: complement(12029..12214)
location: region:12029-12214:-1
so has part: feature:12029-12214:-1:exon
subclass of: SO_0000010

position:12029:-1
position: 12029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12214:-1
position: 12214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12029-12214:-1:exon

AAV35_RS13910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13910
old locus tag: AAV35_013800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008591949.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESYTYRENIFNFSQKPSIIKDVEGNEAYEVQLYYLSGVQKLLTQGLGRVTNGATNIFNRR
SIO_010081: AAV35_RS13910
subclass of: SO_0000673
so part of: AAV35_RS13910
location: complement(12029..12214)
location: region:12029-12214:-1
so has part: feature:12029-12214:-1:exon

WP_008591949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12029-12214:-1:exon

AAV35_RS13915
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13915
old locus tag: AAV35_013805
so part of: sequence
location: complement(12538..13086)
location: region:12538-13086:-1
so has part: feature:12538-13086:-1:exon
subclass of: SO_0000010

position:12538:-1
position: 12538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13086:-1
position: 13086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12538-13086:-1:exon

AAV35_RS13915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13915
old locus tag: AAV35_013805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008592004.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFKKVYAVFIIEFIRFLLWVLFSHPDKKREKKDVNNSIEDLMKIAQQNLVKSQRLNQDLTKGMVSGPTKSIKKLINAFEKNRYLLEEDEQEFYLQVARVWAGGLFNSYYIALICSGIFLVTYLSTFFLHPYLSGWSTVIWMTILFFSAIIGIINALRIEGGIKWLLLLLNVFFFIIFIMIMS
SIO_010081: AAV35_RS13915
subclass of: SO_0000673
so part of: AAV35_RS13915
location: complement(12538..13086)
location: region:12538-13086:-1
so has part: feature:12538-13086:-1:exon

WP_008591951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12538-13086:-1:exon

AAV35_RS13920
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13920
old locus tag: AAV35_013810
so part of: sequence
location: complement(13228..15366)
location: region:13228-15366:-1
so has part: feature:13228-15366:-1:exon
subclass of: SO_0000010

position:13228:-1
position: 13228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15366:-1
position: 15366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13228-15366:-1:exon

AAV35_RS13920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13920
old locus tag: AAV35_013810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016107348.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1906 domain-containing protein
translation: MVLLTQEWVNETYGNNPGYNTIDENGKTGWNTIHALTRALQIELGITNTADNFGAGTLARVRGITPISKNSNINKNIVKIIQGALYCKGYGPGGVTGTYGSGTERAVTVLQRDMGEDNPSGSVDGKFFKALLSMDAYSLLYGGEQSIRTVQQWMNKTYIHRKNFFYMPCDGLYSRNTQEALIYAIQYEEGLSDSIANGHFGPSTQSLLPTLQVGDADGTDNFVRLFQAAMRFNGYDVSFDGQFDANLSSKVKDFQSFTKLTVNGQADFQTWASLLVSTGDPSRDGSACDCITEITPARAETLRQHGYETVGRYLTNVPGGLNKKIQPGELENIFNAGLTVYPIYQTVGRDASYFNEEQGKEDAISAFKAAQDYGFKDGTIIYFAVDFDALGYQISGNIIPYFRSIKQSLNVLGYDYKVGVYGARNVCIQVSEAGHAVSSFVSGMSTGFSGNLGYPLPGNWAFNQISTITIGSGDGQIQIDNNIKSGRDNGASSVSSEVSNNDPSVHSVSSPFAEIQEIYSSESVDTISYSKAYDIKLGRIEGELTGQIIFGDASKGNWDLGVDKAINGDVMDGIINQFLNKMLEDGYLPSGVNEVTEARAEVDRIMDKIPNISEIRVDQLNPKLSSESPFFIMEYLVIEIMRKSAPSVYVKEKLALTDVDWDEDKLQKEAQIIILILILAYATSFAVSAAVIAALGKRLGQALARSMGMLSK
SIO_010081: AAV35_RS13920
subclass of: SO_0000673
so part of: AAV35_RS13920
location: complement(13228..15366)
location: region:13228-15366:-1
so has part: feature:13228-15366:-1:exon

WP_244890598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13228-15366:-1:exon

AAV35_RS13925
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13925
old locus tag: AAV35_013815
so part of: sequence
location: complement(15872..16075)
location: region:15872-16075:-1
so has part: feature:15872-16075:-1:exon
subclass of: SO_0000010

position:15872:-1
position: 15872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16075:-1
position: 16075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15872-16075:-1:exon

AAV35_RS13925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13925
old locus tag: AAV35_013815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006830816.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKNEIIMEVVERMNARIETGAKGTGFQDREDVKQDIHMRLVKVAHDMDVISFWTFKQNFEKNTENG
SIO_010081: AAV35_RS13925
subclass of: SO_0000673
so part of: AAV35_RS13925
location: complement(15872..16075)
location: region:15872-16075:-1
so has part: feature:15872-16075:-1:exon

WP_008590940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15872-16075:-1:exon

AAV35_RS13930
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13930
old locus tag: AAV35_013820
so part of: sequence
location: complement(16072..16569)
location: region:16072-16569:-1
so has part: feature:16072-16569:-1:exon
subclass of: SO_0000010

position:16072:-1
position: 16072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16569:-1
position: 16569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16072-16569:-1:exon

AAV35_RS13930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13930
old locus tag: AAV35_013820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: sigma factor-like helix-turn-helix DNA-binding protein
translation: MNEGNNKELFREATNENNFEASNCLDQRFREFYLRVRLIHYADKLARLYVKSYGEKKRKHYAELTLDTSVQNGSEGETSIKDLYPHPQPPLVEETARSIEDILPTKKMIQIYQSFSKQKQIILHLWVYVQLSIREIAEVLSCSPQNVSKLKAKALSQLREGRDRR
SIO_010081: AAV35_RS13930
subclass of: SO_0000673
so part of: AAV35_RS13930
location: complement(16072..16569)
location: region:16072-16569:-1
so has part: feature:16072-16569:-1:exon

WP_156330904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16072-16569:-1:exon

AAV35_RS13935
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13935
old locus tag: AAV35_013825
so part of: sequence
location: complement(16692..19673)
location: region:16692-19673:-1
so has part: feature:16692-19673:-1:exon
subclass of: SO_0000010

position:16692:-1
position: 16692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19673:-1
position: 19673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16692-19673:-1:exon

AAV35_RS13935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13935
old locus tag: AAV35_013825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010648716.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MYARVRELLTSEERKTYMSIPNELDEWTLGTYFTLSQHDLDVTLRHRRDYNRLGFAVQLCIIRFSGWTLSDIDEVPSNVISYIAKQIKVDPNELPKYSKREATKYEHLVEIRKEYGYRTFTTSEYRQLARLLFDDAMANGNPTHLIQTAIQILRKWKVILPGMATIERVVWETRKRTEQHIFQHFNYSLTSFQLEKLDRLLSPMPDDSGKTYLSWLREIPGQSSPDACLKVIERLEYIKTLQLNVATETIHPNRLRQLSKIGARYEPHSFRRFTKEKRYPILVAYLLHLTQDLIDQAFEIHDRQIMTLQAKGRRAQEELQKKNGKSVNEKVIHYARLGEALIKAREEELDPFATLETIMPWEKFVTSIEEAKDLSRPINYDYLDLLENRFFYLRKYTPTLLKALEFRSTKSTEPLMKALDTIREMNESNKRKVPEDAPLDFVSNRWQKHVYEEDGTINRHYYEMAALTELRNHVRSGDISIAGSRQHKDFEDYLVSKKEWEIASATNATRIAVSSSVDDYLEERRSSLLKRLQLVKENIHELEGVNLTNGKLHIQRIEKDVPEDARTFSASLYRMLPRIKLTDLLMEVSRWTGFDKAFIHTSTGKPPHQEEKPMILAALMGMGTNIGLTKMADATPGISYRQMANVAQWRMDEDALNRAQATLVNFHHKMALSSFWGDGSTSSSDGMRVQVGVSSLHADANPHYGSGKGATIYRFTSDQFSSFYTKVINTNARDAVHVIDGLLHHESELNIEEHYTDTAGYTDQVFGLSHLLGFRFAPRLRDLSDSKLYTFDVMENFQEINDLFRGKINTQIIRDNFDDVLRLTHSIREGTVSGSLIMGKLGSYARQNKISKALREIGRIEKTIFILDYILNESLRRRVQRGLNKGEAMNALARAIFFGKHGELRERALQDQLQRASALNIIINAISLWNTVYLTEATNHLKQNGELDEDLLSHVSPLAWEHINFLGEYKFESNSKTGLQYLPSLNITKAGTP
SIO_010081: AAV35_RS13935
subclass of: SO_0000673
so part of: AAV35_RS13935
location: complement(16692..19673)
location: region:16692-19673:-1
so has part: feature:16692-19673:-1:exon

WP_008591736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16692-19673:-1:exon

AAV35_RS13940
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13940
old locus tag: AAV35_013830
so part of: sequence
location: 19876..20442
location: region:19876-20442:1
so has part: feature:19876-20442:1:exon
subclass of: SO_0000010

position:19876:1
position: 19876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20442:1
position: 20442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19876-20442:1:exon

AAV35_RS13940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13940
old locus tag: AAV35_013830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011459363.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MEYVQPIRDRKQIIAIKKILKATNIRDYCLFNVGINSGLRISDLLQLRIVDVIDGKRNIKDRISIRELKTGKSKDFPIGDTSKKAIKDYLMTRNYEENEPLFRSRKGKESLKRQQAYRIINEAARAVGIKERIGTHTLRKTFGYHAYQSGVDLSILQKLFNHSAPSVTLAYIGMTQDDLDNVYLNLNL
SIO_010081: AAV35_RS13940
subclass of: SO_0000673
so part of: AAV35_RS13940
location: 19876..20442
location: region:19876-20442:1
so has part: feature:19876-20442:1:exon

WP_008591734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19876-20442:1:exon

AAV35_RS13945
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13945
old locus tag: AAV35_013835
so part of: sequence
location: complement(20685..21866)
location: region:20685-21866:-1
so has part: feature:20685-21866:-1:exon
subclass of: SO_0000010

position:20685:-1
position: 20685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21866:-1
position: 21866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20685-21866:-1:exon

AAV35_RS13945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13945
old locus tag: AAV35_013835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014642615.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MEMHLRKNIRYIYIYIFVAQLFFDRALWVIYLSDSGLSMSQIGVVEALMHLSVVLFEIPTGMIADLYGRKVSLFVGNVLSIGYGSIMLISDSFSLFGVALMTLGVGMTFQSGAEEALAYDTLKEKNLEHQYTKVFGNMTALALLSLSLAKLVGGWMAGISWELVYGGIIITHVLSLIPICLLHEPVKEKNSVPHLSVKQQWMDQLRIGINIWRNNQSIHIPIIFFVMVTTSIIILTFYGQEYFTRLGYSSFVIGIIFTVEGLLGVLMAKMAHRLEKKWSFLNITNYGYVLYLAFFLLFIYSPNWAIVLSFLILSQLVTLFEPIFSNFIQNKLQSNVRATFFSMISVVNSFSIMILFPLFGYMIDTIGFKHGFLCLFIILCLLYVFGISKTIKR
SIO_010081: AAV35_RS13945
subclass of: SO_0000673
so part of: AAV35_RS13945
location: complement(20685..21866)
location: region:20685-21866:-1
so has part: feature:20685-21866:-1:exon

WP_008591733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20685-21866:-1:exon

AAV35_RS14645
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14645
so part of: sequence
location: complement(21988..22122)
location: region:21988-22122:-1
so has part: feature:21988-22122:-1:exon
subclass of: SO_0000010

position:21988:-1
position: 21988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22122:-1
position: 22122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21988-22122:-1:exon

AAV35_RS14645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFTLEEFVDEVKQFVVFMMSIFGTLLNDGTRMSNFSLVSKIKQL
SIO_010081: AAV35_RS14645
subclass of: SO_0000673
so part of: AAV35_RS14645
location: complement(21988..22122)
location: region:21988-22122:-1
so has part: feature:21988-22122:-1:exon

WP_272947622.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21988-22122:-1:exon

AAV35_RS13950
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13950
old locus tag: AAV35_013840
so part of: sequence
location: 22637..22882
location: region:22637-22882:1
so has part: feature:22637-22882:1:exon
subclass of: SO_0000010

position:22637:1
position: 22637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22882:1
position: 22882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22637-22882:1:exon

AAV35_RS13950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13950
old locus tag: AAV35_013840
inference: COORDINATES: protein motif:HMM:NF012675.2
GO function: GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutaredoxin domain-containing protein
translation: MNQPKIYLYGSLRCIHCENAKKWLKDNGFNYEYMDVDKLENINTVKSYNVNVIPFILIKYPNGTEKHFVGFKEDDLLKTLT
SIO_010081: AAV35_RS13950
subclass of: SO_0000673
so part of: AAV35_RS13950
location: 22637..22882
location: region:22637-22882:1
so has part: feature:22637-22882:1:exon

WP_065757375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22637-22882:1:exon

AAV35_RS13955
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13955
old locus tag: AAV35_013845
so part of: sequence
location: 22884..22957
location: region:22884-22957:1
so has part: feature:22884-22957:1:exon
subclass of: SO_0000663

position:22884:1
position: 22884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22957:1
position: 22957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22884-22957:1:exon

AAV35_RS13955
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1230341
locus tag: AAV35_RS13955
old locus tag: AAV35_013845
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:22916..22918,aa:Cys,seq:gca)
SIO_010081: AAV35_RS13955
subclass of: SO_0000673
so part of: AAV35_RS13955
location: 22884..22957
location: region:22884-22957:1
so has part: feature:22884-22957:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22884-22957:1:exon

AAV35_RS13965
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13965
so part of: sequence
location: 23233..23382
location: region:23233-23382:1
so has part: feature:23233-23382:1:exon
subclass of: SO_0000010

position:23233:1
position: 23233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23382:1
position: 23382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23233-23382:1:exon

AAV35_RS13965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13965
inference: COORDINATES: protein motif:HMM:NF024249.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YvrJ family protein
translation: MESSFWIDLIGNLGFPIVITLFLLMRLEKKFNQLEQVVIKLLAETRKEK
SIO_010081: AAV35_RS13965
subclass of: SO_0000673
so part of: AAV35_RS13965
location: 23233..23382
location: region:23233-23382:1
so has part: feature:23233-23382:1:exon

WP_073992000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23233-23382:1:exon

AAV35_RS13975
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13975
old locus tag: AAV35_013860
so part of: sequence
location: complement(24398..25081)
location: region:24398-25081:-1
so has part: feature:24398-25081:-1:exon
subclass of: SO_0000010

position:24398:-1
position: 24398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25081:-1
position: 25081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24398-25081:-1:exon

AAV35_RS13975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13975
old locus tag: AAV35_013860
EC number: 3.5.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018922694.1
GO function: GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO process: GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MIIEDFIPKANTNRPGNPIRPSHITVHETANTDVGANAQMHANYLKSEEAQEREVSWHYTVDDSKTYQHLLEDEIGWHAGSEGNKKSIGVELCVNNDGDFFKTRNRGIKLIRLLMRKWDIPLSRVVPHYYWTGKDCPAQLLNEWSIFKDQIADRSEGPSIVDKPMLEVITEELWVYDEPDWQSKYEVVQEGEIFTIVSELTVNGSTMYQLKSGLYITGNRDFVKRIS
SIO_010081: AAV35_RS13975
subclass of: SO_0000673
so part of: AAV35_RS13975
location: complement(24398..25081)
location: region:24398-25081:-1
so has part: feature:24398-25081:-1:exon

WP_008591807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24398-25081:-1:exon

AAV35_RS13980
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13980
old locus tag: AAV35_013865
so part of: sequence
location: complement(25298..26260)
location: region:25298-26260:-1
so has part: feature:25298-26260:-1:exon
subclass of: SO_0000010

position:25298:-1
position: 25298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26260:-1
position: 26260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25298-26260:-1:exon

AAV35_RS13980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13980
old locus tag: AAV35_013865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008635946.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S8 family peptidase
translation: MSTQKITLPPVSKQRTENIGEDLPPNILSVGAKAKWQKGYYGKGVVTAIIDTGCDTNHPDLKEGIIGGHNFTEEHNSDASIIEDLNGHGTHVAGTLAGAINKTGIVGVAPGADLLILKALNKEGTGSIQALIKAIDYAIDWRGENQEQVRIISVSLGLKKHNEKLHKAIKRAVNNDIIVVASSGNDGDGSLKTDEFRYPGAYKEVQQVGAIDKDHAPDVAYFSNTNDEVDVYAPGVSIYSTSLDGEFRSLSGTSMATPHVAGAVALLIEEYEYILFRKLSTEEIMAVLREHTTSVRVGKDRVIRSLQLDQEHVLEKKEDK
SIO_010081: AAV35_RS13980
subclass of: SO_0000673
so part of: AAV35_RS13980
location: complement(25298..26260)
location: region:25298-26260:-1
so has part: feature:25298-26260:-1:exon

WP_008591806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25298-26260:-1:exon

AAV35_RS14650
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14650
so part of: sequence
location: 26572..26700
location: region:26572-26700:1
so has part: feature:26572-26700:1:exon
subclass of: SO_0000010

position:26572:1
position: 26572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26700:1
position: 26700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26572-26700:1:exon

AAV35_RS14650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKGLEGEKNKTTSFHVEEKIELVFINTTMHRASTNNSLKKEQ
SIO_010081: AAV35_RS14650
subclass of: SO_0000673
so part of: AAV35_RS14650
location: 26572..26700
location: region:26572-26700:1
so has part: feature:26572-26700:1:exon

WP_280522078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26572-26700:1:exon

AAV35_RS13985
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13985
old locus tag: AAV35_013870
so part of: sequence
location: 26937..27206
location: region:26937-27206:1
so has part: feature:26937-27206:1:exon
subclass of: SO_0000010

position:26937:1
position: 26937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27206:1
position: 27206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26937-27206:1:exon

AAV35_RS13985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13985
old locus tag: AAV35_013870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKYIHTINIIIGVLAVGFSLFLTWAVSAFAPEENAGVIFIPILVTAVWFIGYMLQIKYNTLKNVLITLPVEAIVIYLIITQISSIIS
SIO_010081: AAV35_RS13985
subclass of: SO_0000673
so part of: AAV35_RS13985
location: 26937..27206
location: region:26937-27206:1
so has part: feature:26937-27206:1:exon

WP_008591701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26937-27206:1:exon

AAV35_RS13990
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13990
old locus tag: AAV35_013875
so part of: sequence
location: complement(27252..28028)
location: region:27252-28028:-1
so has part: feature:27252-28028:-1:exon
subclass of: SO_0000010

position:27252:-1
position: 27252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28028:-1
position: 28028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27252-28028:-1:exon

AAV35_RS13990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13990
old locus tag: AAV35_013875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFIKGAKIEANSIEELMLEGVDLELVKKEMNQYGVFSEDEITKKSAIEFFVTENEETQVENAEVKGLGLVLKNNNQSAIEITRYENQKLNDVNFVTRATVVTKNDAQIVKHKLKFEDGELVHKNDVETTHPEITFYGEELLSDNEVSAANSDPDEFWGVPCFDVNPANAECCQFRYNGLPWKELVEYNYCGAGCTRSWLEPENPLDACCETHDSCYGRNFNSCACDYALLNCAEGTDEAGGSRLILAFEAKTRTGVCS
SIO_010081: AAV35_RS13990
subclass of: SO_0000673
so part of: AAV35_RS13990
location: complement(27252..28028)
location: region:27252-28028:-1
so has part: feature:27252-28028:-1:exon

WP_008591703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27252-28028:-1:exon

AAV35_RS13995
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS13995
old locus tag: AAV35_013880
so part of: sequence
location: 29000..29254
location: region:29000-29254:1
so has part: feature:29000-29254:1:exon
subclass of: SO_0000010

position:29000:1
position: 29000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29254:1
position: 29254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29000-29254:1:exon

AAV35_RS13995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS13995
old locus tag: AAV35_013880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIKIRNINPSIVQEFDEKAKKQGLSRQEYLRSILENYTLLNNINDRELEYQNRLEKNTKMLEIISEKLDKNNEFLHYLTEDDS
SIO_010081: AAV35_RS13995
subclass of: SO_0000673
so part of: AAV35_RS13995
location: 29000..29254
location: region:29000-29254:1
so has part: feature:29000-29254:1:exon

WP_008591704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29000-29254:1:exon

AAV35_RS14000
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14000
old locus tag: AAV35_013885
so part of: sequence
location: 29460..29885
location: region:29460-29885:1
so has part: feature:29460-29885:1:exon
subclass of: SO_0000010

position:29460:1
position: 29460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29885:1
position: 29885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29460-29885:1:exon

AAV35_RS14000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14000
old locus tag: AAV35_013885
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEQNPAIRLRLTKESRAYIEKYAEENNIVYNNRTINKIIEEHKQMKEEQTSSLASSISQEVSNQINKEIRRIRLGTNNADRNTQILLELLNGMFVNQSIDDIVTTADMETNAYRTATQHVQKRIEHQQQRRADAKHRNHL
SIO_010081: AAV35_RS14000
subclass of: SO_0000673
so part of: AAV35_RS14000
location: 29460..29885
location: region:29460-29885:1
so has part: feature:29460-29885:1:exon

WP_008591706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29460-29885:1:exon

AAV35_RS14005
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14005
old locus tag: AAV35_013890
so part of: sequence
location: complement(30253..30522)
location: region:30253-30522:-1
so has part: feature:30253-30522:-1:exon
subclass of: SO_0000010

position:30253:-1
position: 30253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30522:-1
position: 30522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30253-30522:-1:exon

AAV35_RS14005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14005
old locus tag: AAV35_013890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019380318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5839 family protein
translation: MKTNNTIAGCHVLRDEDGLWKVRTSKLYSWNIPKVLRQDPIQPGDIVEVATSRGRKPVLVMDVFREEFEETQRRYKKVLKVLERAPEEE
SIO_010081: AAV35_RS14005
subclass of: SO_0000673
so part of: AAV35_RS14005
location: complement(30253..30522)
location: region:30253-30522:-1
so has part: feature:30253-30522:-1:exon

WP_008591708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30253-30522:-1:exon

AAV35_RS14010
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14010
old locus tag: AAV35_013895
so part of: sequence
location: complement(30784..32286)
location: region:30784-32286:-1
so has part: feature:30784-32286:-1:exon
subclass of: SO_0000010

position:30784:-1
position: 30784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32286:-1
position: 32286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30784-32286:-1:exon

AAV35_RS14010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14010
old locus tag: AAV35_013895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008591590.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: primase C-terminal domain-containing protein
translation: MQTPTNILAFITHQSLSTYKRMHSRAPLPARREAEKNNRQKQGVVFVSRSKEELQEARGHVVTSYETLQDQQRQLTHWTPNTFLWGSYTDRRKRILRGHRKDNLKQINTIVLDIDTKQTDLYALFLGCAEENLPDPSLIVETPRGYHVYFVLEEPMFISPSTGHRSLKVAERIADNMKQALATYVPIDTACNPFGFFRMPTADNVKYQSETKASVPELIAWSQSYEQRQQYSAFHVVHGGAQVRQIDQVWYQTLLQCRHITSGHYTSSRNNTLLTLAIANYASGRSYDEAYDELDEFNSRLEHPLSLQEFRRTMASAYSGRYQGAKRTYIDMLLMQWTGEASTDTYGSGWYKFKKDRSERQRSHYEEWETDILRYLELHTSSTCAEELFLEGSQAYLAEQFGMAVSTLKEVLKRSTKLVKIVKGRGRGQRTYLASRAVLFAYLLYVRQERVVHATTWKAMVEVLVTEAPFPVNRLLAETQETFTRWATRVEQHFRSPWIC
SIO_010081: AAV35_RS14010
subclass of: SO_0000673
so part of: AAV35_RS14010
location: complement(30784..32286)
location: region:30784-32286:-1
so has part: feature:30784-32286:-1:exon

WP_008591710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30784-32286:-1:exon

AAV35_RS14015
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14015
old locus tag: AAV35_013900
so part of: sequence
location: 32835..33980
location: region:32835-33980:1
so has part: feature:32835-33980:1:exon
subclass of: SO_0000010

position:32835:1
position: 32835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33980:1
position: 33980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32835-33980:1:exon

AAV35_RS14015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14015
old locus tag: AAV35_013900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003349919.1
GO function: GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParM/StbA family protein
translation: MRIAAIDVGNDALKGYFGGLDEHMYIPNVIAEEDEERQTYDYEKSILNGLHVEIASSSLDRGKGIYAVGSLAATKQFNDELTSNSEKASSDQTLVMLLTSLAVDATKHFKEENGVIEATYFLSTGLPLDETKKKRRKQFQEKLLHSQHEITFLQTPLVQGKKVRIKFKDVLVNIEGFGAFIDLTTHENGATKNEEMLERTVLINDIGGISTDSAVINPNGDIDNNASIGIDEGISTYLDEIAEKVYDEYKYEFRSRPLVANVLTGKNHERKNHIKVDGKPVSIQSIVDPVLTRAAKTQYKHIQKIWRTAPSLDDAYLIGGGSLLLKPYLERINEQENEFPLHFVGETDEQEAVWTIARAYYKLLHIYANQKNITLDAAAGE
SIO_010081: AAV35_RS14015
subclass of: SO_0000673
so part of: AAV35_RS14015
location: 32835..33980
location: region:32835-33980:1
so has part: feature:32835-33980:1:exon

WP_008591712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32835-33980:1:exon

AAV35_RS14020
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14020
old locus tag: AAV35_013905
so part of: sequence
location: 33986..34387
location: region:33986-34387:1
so has part: feature:33986-34387:1:exon
subclass of: SO_0000010

position:33986:1
position: 33986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34387:1
position: 34387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33986-34387:1:exon

AAV35_RS14020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14020
old locus tag: AAV35_013905
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEPFYPGKTIAIRLPKDTPPEVLDRLDELKQTEGRGFSRAITDHLFHSILSETTMRDNAYLPLPGPLTFEEKEMLNTPMQRRVLGHFVYHLIKEDFPLELPKEKKEESASSTFQTSTIHNKFASNLFNMDDD
SIO_010081: AAV35_RS14020
subclass of: SO_0000673
so part of: AAV35_RS14020
location: 33986..34387
location: region:33986-34387:1
so has part: feature:33986-34387:1:exon

WP_008591715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33986-34387:1:exon

AAV35_RS14025
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14025
old locus tag: AAV35_013910
so part of: sequence
location: 35098..35754
location: region:35098-35754:1
so has part: feature:35098-35754:1:exon
subclass of: SO_0000010

position:35098:1
position: 35098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35754:1
position: 35754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35098-35754:1:exon

AAV35_RS14025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14025
old locus tag: AAV35_013910
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEDFYRISDVAGKVGKHVNTVDGWFKRLEEEEKLHYINRVGGEKAYDADDLNLAMYIKEKRENKWSFDGIFNYLQQGEADIPLRPFPEGAGEEEAAELVDVSALKREMYREMEDMAREMAKEQVQEVQEQYQALRKQLPDPEQERQKRINDLFTRRRVEQKLEEEALEKWREKPDEERMKRVGWFRKEEDRDKRELFVKDYMNNRFEERILEEYGEER
SIO_010081: AAV35_RS14025
subclass of: SO_0000673
so part of: AAV35_RS14025
location: 35098..35754
location: region:35098-35754:1
so has part: feature:35098-35754:1:exon

WP_008591717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35098-35754:1:exon

AAV35_RS14030
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14030
old locus tag: AAV35_013915
pseudo: true
so part of: sequence
location: 35781..36784
location: region:35781-36784:1
so has part: feature:35781-36784:1:exon
subclass of: SO_0000010

position:35781:1
position: 35781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36784:1
position: 36784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35781-36784:1:exon

AAV35_RS14030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14030
old locus tag: AAV35_013915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009792073.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA/RNA non-specific endonuclease
SIO_010081: AAV35_RS14030
subclass of: SO_0000673
so part of: AAV35_RS14030
location: 35781..36784
location: region:35781-36784:1
so has part: feature:35781-36784:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35781-36784:1:exon

AAV35_RS14510
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14510
so part of: sequence
location: 36969..37133
location: region:36969-37133:1
so has part: feature:36969-37133:1:exon
subclass of: SO_0000010

position:36969:1
position: 36969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37133:1
position: 37133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36969-37133:1:exon

AAV35_RS14510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002580211.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQFEYRVEDIQFQLKANNDFSAVMEEKLNFLGKDGWELAGVNGTVFYFKKEVK
SIO_010081: AAV35_RS14510
subclass of: SO_0000673
so part of: AAV35_RS14510
location: 36969..37133
location: region:36969-37133:1
so has part: feature:36969-37133:1:exon

WP_008591718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36969-37133:1:exon

misc_binding
type: Miscellaneous Binding Site
subclass of: SO_0000409
RO_0002162: 1230341
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00230
inference: COORDINATES: profile:INFERNAL:1.1.4
note: T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: tRNA
so part of: sequence
location: 37236..37458
location: region:37236-37458:1
so has part: feature:37236-37458:1:region

position:37236:1
position: 37236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37458:1
position: 37458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37236-37458:1:region

misc_binding
type: Miscellaneous Binding Site
subclass of: SO_0000409
RO_0002162: 1230341
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00230
inference: COORDINATES: profile:INFERNAL:1.1.4
note: T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: tRNA
so part of: sequence
location: 37489..37711
location: region:37489-37711:1
so has part: feature:37489-37711:1:region

position:37489:1
position: 37489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37711:1
position: 37711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37489-37711:1:region

AAV35_RS14035
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14035
old locus tag: AAV35_013920
so part of: sequence
location: 37761..38273
location: region:37761-38273:1
so has part: feature:37761-38273:1:exon
subclass of: SO_0000010

position:37761:1
position: 37761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38273:1
position: 38273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37761-38273:1:exon

AAV35_RS14035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14035
old locus tag: AAV35_013920
inference: COORDINATES: protein motif:HMM:NF014839.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TGS domain-containing protein
translation: MNHEKMVISFPDGSKKSYSKGSTLEDVAQSISPSLKKKSVVGRVNGSLYDMQNPINSNAEIELFPLNSSEGLEVMRHTAAHIMAQAVKRLFGRVNLGVGPVVENGFYYDINTDQSISKDDLSKIEKEMSNIVAENLFIKRELISREEAESIFSNDHLKLELLKKIPWYRQ
SIO_010081: AAV35_RS14035
subclass of: SO_0000673
so part of: AAV35_RS14035
location: 37761..38273
location: region:37761-38273:1
so has part: feature:37761-38273:1:exon

WP_008591720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37761-38273:1:exon

AAV35_RS14040
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14040
old locus tag: AAV35_013925
so part of: sequence
location: complement(38312..39502)
location: region:38312-39502:-1
so has part: feature:38312-39502:-1:exon
subclass of: SO_0000010

position:38312:-1
position: 38312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39502:-1
position: 39502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38312-39502:-1:exon

AAV35_RS14040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14040
old locus tag: AAV35_013925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010531912.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MSTSIGQNNFENQLEDMVRSFVQEKLETVMKEEMNQFFEENPELKNYKNGSYGRQLDTKYGRIEDLQVPRDRDNAFQTEMFQPYQRYEQWLGETIVTMYHKGMSTREIGNFLEHILGHAYAPGTISNITDVVIEDIRAWQERPLQKRYAVLYLDGTYLKLRRDDVANEVVYVVIGVTEDGYREILGFYVGGQESSLGWEEVLSDIYRRGCEEVLLGIFDGLPGLEEAMKAIYPKADVQRCVVHKVRNTLNKVRKKDRSAISEDMKAIYRSNSKEEAEKQLDAFCDTWQKKYPKIAKSWREDFYVLTTFLNYPSSIRPMIYTTNIIERTMKEFKKRLKTMNSLPSEEAVEKVIYMISDECNTKWSTRRLRGFKEASPELHTMFEERYGSQTETEEKR
SIO_010081: AAV35_RS14040
subclass of: SO_0000673
so part of: AAV35_RS14040
location: complement(38312..39502)
location: region:38312-39502:-1
so has part: feature:38312-39502:-1:exon

WP_065757343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38312-39502:-1:exon

AAV35_RS14045
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
gene: thrS
locus tag: AAV35_RS14045
old locus tag: AAV35_013930
pseudo: true
so part of: sequence
location: <39605..41038
location: region:39605-41038:1
so has part: feature:39605-41038:1:exon
subclass of: SO_0000010

position:39605:1
position: 39605
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:41038:1
position: 41038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39605-41038:1:exon

AAV35_RS14045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
gene: thrS
locus tag: AAV35_RS14045
old locus tag: AAV35_013930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006835912.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: threonine--tRNA ligase
SIO_010081: AAV35_RS14045
subclass of: SO_0000673
so part of: AAV35_RS14045
location: <39605..41038
location: region:39605-41038:1
so has part: feature:39605-41038:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39605-41038:1:exon

AAV35_RS14050
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14050
old locus tag: AAV35_013935
so part of: sequence
location: complement(41266..42468)
location: region:41266-42468:-1
so has part: feature:41266-42468:-1:exon
subclass of: SO_0000010

position:41266:-1
position: 41266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42468:-1
position: 42468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41266-42468:-1:exon

AAV35_RS14050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14050
old locus tag: AAV35_013935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011247655.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MIYLGIDIGKRHHEAGLINESGNPIGKTIRFANSKKGSEKLLTFLNQHQVTPENCACGMEATGHYWLSLFSFLYQLGYKVTSFNPMQSDALRNFYIRKTKTDIKDAYLIAQVIRIDSPEATPFVQEDLLQLRHLERLRYALVDQSSDVKRKIIALLDQVFPEYEQVFSDVFGLSSTEILLNYTLPEDLLDIDTEKLADVLYRVSKGRYGITRARWKAEQLKESAQNTFGISIGTEAFKMQIHLLLEQIALFEKQLSQIEKELKELSDRQNHYLTTITGVNDVTAAVILGEVGSIDRFEHPKQLVAFAGLDASVHQSGEFNRSKTKLSKRGSPYLRRAIWQAAFVASFKDPALSLYYQKLRERGKAHGTAVGAVARKLTHIIFAILRDQTPYVPRPQTNGD
SIO_010081: AAV35_RS14050
subclass of: SO_0000673
so part of: AAV35_RS14050
location: complement(41266..42468)
location: region:41266-42468:-1
so has part: feature:41266-42468:-1:exon

WP_008591815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41266-42468:-1:exon

AAV35_RS14055
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14055
old locus tag: AAV35_013940
so part of: sequence
location: 42838..43215
location: region:42838-43215:1
so has part: feature:42838-43215:1:exon
subclass of: SO_0000010

position:42838:1
position: 42838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43215:1
position: 43215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42838-43215:1:exon

AAV35_RS14055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14055
old locus tag: AAV35_013940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000776354.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: enoyl-CoA hydratase
translation: MALKVGDKITFERTFSVEDVELFTKISGDEGVHHLTPDDQGRLVVQGLLTATLPTKIGGDNNVMARHMDFEFLRPVFTEDTIRCEAQIEKYEKQEKNRIAIIASFICTNQKGKEVLKGGFSGVIL
SIO_010081: AAV35_RS14055
subclass of: SO_0000673
so part of: AAV35_RS14055
location: 42838..43215
location: region:42838-43215:1
so has part: feature:42838-43215:1:exon

WP_008591910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42838-43215:1:exon

AAV35_RS14060
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
gene: xerS
locus tag: AAV35_RS14060
old locus tag: AAV35_013945
so part of: sequence
location: 43603..44679
location: region:43603-44679:1
so has part: feature:43603-44679:1:exon
subclass of: SO_0000010

position:43603:1
position: 43603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44679:1
position: 44679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43603-44679:1:exon

AAV35_RS14060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
gene: xerS
locus tag: AAV35_RS14060
old locus tag: AAV35_013945
inference: COORDINATES: protein motif:HMM:NF003462.0
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine recombinase XerS
translation: MMAERLTRQQRQHKEKVEEKLTSLPPFIDEYKDDMYTGNTSPSTLLGYIHDFETFFRWLMREGIVDVEHIKDVSLSALEHLRLVETNAFFTHLSMERELQEESINRKKSSLKSLYKFLTTRTEDEDGECYFYRNVMAKVKMAKTSETLSSRAERISNKILTGEDIEAFVTFVGEGYEEIVQGQKQRLAYYKRDKERDQAIIALLLASGLRVSELANLRLSSINLKRRKLSVLRKGNKESIVFFRSFAVPYLQAYLEVREEKYKVQDKEPYLFLSVYRGTANPMSVRAIQHTVMKYTKAYRDEQLSPHKMRHSFATEFAKRNTMYDLMRQLGHTSTDTSTLYVNAQEQEAQNSIDRMDD
SIO_010081: AAV35_RS14060
subclass of: SO_0000673
so part of: AAV35_RS14060
location: 43603..44679
location: region:43603-44679:1
so has part: feature:43603-44679:1:exon

WP_082409548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43603-44679:1:exon

AAV35_RS14065
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14065
old locus tag: AAV35_14245
pseudo: true
so part of: sequence
location: complement(45141..46102)
location: region:45141-46102:-1
so has part: feature:45141-46102:-1:exon
subclass of: SO_0000010

position:45141:-1
position: 45141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46102:-1
position: 46102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45141-46102:-1:exon

AAV35_RS14065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14065
old locus tag: AAV35_14245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010896492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS256 family transposase
SIO_010081: AAV35_RS14065
subclass of: SO_0000673
so part of: AAV35_RS14065
location: complement(45141..46102)
location: region:45141-46102:-1
so has part: feature:45141-46102:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45141-46102:-1:exon

AAV35_RS14070
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14070
old locus tag: AAV35_013955
so part of: sequence
location: complement(46386..47315)
location: region:46386-47315:-1
so has part: feature:46386-47315:-1:exon
subclass of: SO_0000010

position:46386:-1
position: 46386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47315:-1
position: 47315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46386-47315:-1:exon

AAV35_RS14070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14070
old locus tag: AAV35_013955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016898482.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MYAIETHNLTKKYSEKRVVNQISLKVKKGTIFGFLGKNGAGKSTFINMITGLTIPTEGSYSLLSNKDMTLKEKRTKIGVLPDYSTFYDDLTAIGHLKYFSKILGLNLSKEDMIETLKSVGLEDAINQKAKKFSFGMKKKLGIAQALINKPDLLFLDEPTSGVDANAILNIHEIINNVAEQGTTIFLTSHNLDEVEKMCDEIAIMDKGVIRTQGTMEQLKNNYQNNLTVSIKHGTLLEGTSKTLEQELHALGTNIQMAKNKTSIVVSDEDTIPIVNKIFLNMEIDVFRIEVDEPTLEEIFLNTGETKQTA
SIO_010081: AAV35_RS14070
subclass of: SO_0000673
so part of: AAV35_RS14070
location: complement(46386..47315)
location: region:46386-47315:-1
so has part: feature:46386-47315:-1:exon

WP_008591914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46386-47315:-1:exon

AAV35_RS14075
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14075
old locus tag: AAV35_013960
so part of: sequence
location: complement(47316..48005)
location: region:47316-48005:-1
so has part: feature:47316-48005:-1:exon
subclass of: SO_0000010

position:47316:-1
position: 47316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48005:-1
position: 48005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47316-48005:-1:exon

AAV35_RS14075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14075
old locus tag: AAV35_013960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003474165.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease subunit
translation: MLTISLKEFKSLFKSVRSIIVIGVLFGVTLGAAKLVNSFQGQLEQVGLGNNAYAGGAMIIVLVAGPLFVLSLSHNVINQEISSRTIRFIATKTSRFNFIAGKFLGVTFFWLLCLFIAFLLIIPFSEDFYFLEFSQSFVFIFYFVGITILLSTLIPKPTLTMFIGVILATSFTVLGFWSMASDNIFLKLYSFVTPYFYYSQDKEFLAYTVLIFPVLFLGLSLLILRKRDL
SIO_010081: AAV35_RS14075
subclass of: SO_0000673
so part of: AAV35_RS14075
location: complement(47316..48005)
location: region:47316-48005:-1
so has part: feature:47316-48005:-1:exon

WP_008591916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47316-48005:-1:exon

AAV35_RS14080
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14080
old locus tag: AAV35_013965
so part of: sequence
location: 48220..48516
location: region:48220-48516:1
so has part: feature:48220-48516:1:exon
subclass of: SO_0000010

position:48220:1
position: 48220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48516:1
position: 48516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48220-48516:1:exon

AAV35_RS14080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14080
old locus tag: AAV35_013965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154618.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2089 family protein
translation: MSGKNIPSWVLSLDVEDLEFIKKFVVNSGSLKKLADIYNVSYPTVRTRVDRLIHRIEIHNEQEEENLASFIRQLAIEERISLEDAKLLIEKYKVERKE
SIO_010081: AAV35_RS14080
subclass of: SO_0000673
so part of: AAV35_RS14080
location: 48220..48516
location: region:48220-48516:1
so has part: feature:48220-48516:1:exon

WP_008591917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48220-48516:1:exon

AAV35_RS14085
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14085
old locus tag: AAV35_013970
so part of: sequence
location: 48519..48803
location: region:48519-48803:1
so has part: feature:48519-48803:1:exon
subclass of: SO_0000010

position:48519:1
position: 48519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48803:1
position: 48803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48519-48803:1:exon

AAV35_RS14085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14085
old locus tag: AAV35_013970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003474167.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDISMFIAIIIMVGIQYFMSTRNSAFLGIIVPIAFITVMTWMFVTNQINSFLKFAVLLIVGLLFLLEEWVRGRKSLSKKRDNELNKMKSSDLK
SIO_010081: AAV35_RS14085
subclass of: SO_0000673
so part of: AAV35_RS14085
location: 48519..48803
location: region:48519-48803:1
so has part: feature:48519-48803:1:exon

WP_008591918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48519-48803:1:exon

AAV35_RS14450
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14450
so part of: sequence
location: complement(49109..49267)
location: region:49109-49267:-1
so has part: feature:49109-49267:-1:exon
subclass of: SO_0000010

position:49109:-1
position: 49109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49267:-1
position: 49267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49109-49267:-1:exon

AAV35_RS14450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017358895.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aureocin A53 family class IId bacteriocin
translation: MIGAVTRAWSYISRLSGAAASWARRNFTRVVNWIKDGATFEWISDKIDSILD
SIO_010081: AAV35_RS14450
subclass of: SO_0000673
so part of: AAV35_RS14450
location: complement(49109..49267)
location: region:49109-49267:-1
so has part: feature:49109-49267:-1:exon

WP_156330908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49109-49267:-1:exon

AAV35_RS14090
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14090
old locus tag: AAV35_013975
so part of: sequence
location: 49612..50139
location: region:49612-50139:1
so has part: feature:49612-50139:1:exon
subclass of: SO_0000010

position:49612:1
position: 49612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50139:1
position: 50139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49612-50139:1:exon

AAV35_RS14090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14090
old locus tag: AAV35_013975
inference: COORDINATES: protein motif:HMM:NF015648.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PH domain-containing protein
translation: MDQELIEPTQKISKNAVKLWRTTSVLGFIAMIIILVIFKFLISYFNWLDWLDILVYIVGGLFIVGLFFDLFVVPAYKQKTWRYGIDQNCIQLKYGGIIKKTHTVIPMDKVYFVNTFQHPLLQKYKLSSVKIGTVAYTHEIPALPEEQAKNVRRHIAALSGISDSNSRKEEGGNIE
SIO_010081: AAV35_RS14090
subclass of: SO_0000673
so part of: AAV35_RS14090
location: 49612..50139
location: region:49612-50139:1
so has part: feature:49612-50139:1:exon

WP_008591919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49612-50139:1:exon

AAV35_RS14095
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14095
old locus tag: AAV35_013980
so part of: sequence
location: 50132..51640
location: region:50132-51640:1
so has part: feature:50132-51640:1:exon
subclass of: SO_0000010

position:50132:1
position: 50132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51640:1
position: 51640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50132-51640:1:exon

AAV35_RS14095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14095
old locus tag: AAV35_013980
inference: COORDINATES: protein motif:HMM:NF015648.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PH domain-containing protein
translation: MNNKNSPEHPIIRLHPLWILIQVGKSIKGLFFFSIFLFLILEWDFNIFSINVGKWLLITFLAYNIISILLQWRYFGYYLLENELFVRKGRFLKEARYVPYERVQGINQYTPLLHKLLGYTMLLLDLGANEKEGSIKLDMLTYKEAERIKQHLTMNGATSVKAQNDSSENGISISKSSLYVNHYEISKEEIVIGSLTSLKIVLFSTLIFSTYSDIQQFFSIESYVNQILAFLLSSWWITTLVLFSLVTVSIGYGLIKTYAQYGGFVVNSDNERIYIHKGKVNNTAFSIPKVNVQALTLKSTLIHKLLGIVKVKVISTNSKEDGEVLTSNILFPFIKEEKAKKIITEMLPKFRINNDMVHLPKSSIVIKVIRTSYIWIITSFLVYFYAPSFWYLALLITILTISGQIMNGLFSSYSLSKEHFQMKKCFFSFRTFFTPTSNIEELKYSNNLFQNLFGLSSLIITTRANPVKITKLLDFPHENAQDYCYKYQEFIYSREKSRKSVN
SIO_010081: AAV35_RS14095
subclass of: SO_0000673
so part of: AAV35_RS14095
location: 50132..51640
location: region:50132-51640:1
so has part: feature:50132-51640:1:exon

WP_008591920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50132-51640:1:exon

AAV35_RS14595
type: Gene
subclass of: SO_0000704
RO_0002162: 1230341
locus tag: AAV35_RS14595
pseudo: true
so part of: sequence
location: 51935..52388
location: region:51935-52388:1
so has part: feature:51935-52388:1:exon
subclass of: SO_0000010

position:51935:1
position: 51935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52388:1
position: 52388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51935-52388:1:exon

AAV35_RS14595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1230341
locus tag: AAV35_RS14595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014305152.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
SIO_010081: AAV35_RS14595
subclass of: SO_0000673
so part of: AAV35_RS14595
location: 51935..52388
location: region:51935-52388:1
so has part: feature:51935-52388:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51935-52388:1:exon