Hymenobacter swuensis DY53 plasmid pHsw3, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Complete sequence of plasmid3 of ionizing-radiation resistance bacterium Hymenobacter swuensis DY53
Submitted (21-JAN-2014) Radiation Research Division for Biotechnology, Korea Atomic Energy Research Institute, 29 Geumgu street, Jeongeup 580-185, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP007146.1.\nThe bacteria is available from Prof. Myung Kyum Kim in Seoul\nWomen's University (mkkim@swu.ac.kr).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: gsAssembler v. 2.6\nGenome Coverage :: 8.3x; 814x\nSequencing Technology :: 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 11:49:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,513\nCDSs (total) :: 4,458\nGenes (coding) :: 4,423\nCDSs (with protein) :: 4,423\nGenes (RNA) :: 55\nrRNAs :: 2, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 35\nCDSs (without protein) :: 35\nPseudo Genes (ambiguous residues) :: 0 of 35\nPseudo Genes (frameshifted) :: 7 of 35\nPseudo Genes (incomplete) :: 25 of 35\nPseudo Genes (internal stop) :: 11 of 35\nPseudo Genes (multiple problems) :: 6 of 35\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR00571.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_002708497.1
HNH endonuclease signature motif containing protein