Azospirillum humicireducens strain SgZ-5 plasmid pYZ1.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum.
Complete genome sequence of the nitrogen-fixing bacterium Azospirillum humicireducens type strain SgZ-5
Submitted (19-APR-2018) Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-Environmental Science & Technology, No. 808 Tianyuan Road, Guangzhou, Guangdong 510650, China
Genome reannotated when plasmids were added to the assembly
Submitted (12-APR-2018) Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-Environmental Science & Technology, No. 808 Tianyuan Road, Guangzhou, Guangdong 510650, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP028902.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: A5-Miseq v. v20150522\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 259.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 11:12:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,141\nCDSs (total) :: 6,057\nGenes (coding) :: 5,874\nCDSs (with protein) :: 5,874\nGenes (RNA) :: 84\nrRNAs :: 4, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 5, 4 (5S, 16S, 23S)\npartial rRNAs :: 1 (23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 183\nCDSs (without protein) :: 183\nPseudo Genes (ambiguous residues) :: 0 of 183\nPseudo Genes (frameshifted) :: 30 of 183\nPseudo Genes (incomplete) :: 166 of 183\nPseudo Genes (internal stop) :: 10 of 183\nPseudo Genes (multiple problems) :: 21 of 183\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
type strain of Azospirillum humicireducens
COORDINATES: similar to AA sequence:RefSeq:WP_014188677.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014188678.1
COORDINATES: protein motif:HMM:NF012301.2
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014188924.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188925.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188926.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188928.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188929.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188930.1
protein-glutamate O-methyltransferase CheR
COORDINATES: similar to AA sequence:RefSeq:WP_014188931.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188932.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188933.1
COORDINATES: protein motif:HMM:NF014567.2
GO:0005515 - protein binding [Evidence IEA]
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014188939.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014188940.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976141.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188942.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188943.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188944.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188945.1
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014188946.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188947.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188948.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188949.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188950.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188951.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976130.1
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188953.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188992.1
COORDINATES: similar to AA sequence:RefSeq:WP_015867513.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188990.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF028509.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014188989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188988.1
COORDINATES: similar to AA sequence:RefSeq:WP_003251112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188986.1
COORDINATES: similar to AA sequence:RefSeq:WP_003251117.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188984.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188983.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012051873.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188981.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751055.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014199242.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188976.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188975.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188974.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188973.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188972.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188971.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188970.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188969.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188968.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188967.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188966.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188965.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188964.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014188963.1
quinoprotein relay system zinc metallohydrolase 1
COORDINATES: similar to AA sequence:RefSeq:WP_014188962.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_014188961.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188960.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188959.1
YVTN family beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188958.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188956.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188955.1
GO:0006281 - DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada
COORDINATES: similar to AA sequence:RefSeq:WP_014188954.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004309122.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188994.1
COORDINATES: similar to AA sequence:RefSeq:WP_017245409.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189003.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189004.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012975697.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189006.1
GO:0016746 - acyltransferase activity [Evidence IEA]
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012976213.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008133379.1
GO:0004067 - asparaginase activity [Evidence IEA]
GO:0006528 - asparagine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189016.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189018.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189019.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189020.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189021.1
siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189022.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189028.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189029.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189030.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189031.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189032.1
COORDINATES: similar to AA sequence:RefSeq:WP_017338969.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189034.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189035.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189036.1
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014189038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189040.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189041.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189043.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189044.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189045.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189046.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: similar to AA sequence:RefSeq:WP_014189047.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189048.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189059.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976999.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003508428.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014189062.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242487.1
COORDINATES: protein motif:HMM:NF024211.2
COORDINATES: protein motif:HMM:NF023045.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189066.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189786.1
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189068.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189069.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189070.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189071.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: similar to AA sequence:RefSeq:WP_014189072.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189073.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189075.1
aldehyde ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976978.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976977.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_014189077.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189078.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555048.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_014189081.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_014189082.1
GO:0015649 - 2-keto-3-deoxygluconate:proton symporter activity [Evidence IEA]
GO:0046411 - 2-keto-3-deoxygluconate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189083.1
malate/lactate/ureidoglycolate dehydrogenase
COORDINATES: protein motif:HMM:NF019874.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189086.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567614.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189089.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189090.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189091.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
manganese-binding transcriptional regulator MntR
COORDINATES: similar to AA sequence:RefSeq:WP_012976962.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189093.1
hydroxypyruvate isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010500734.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_012650239.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189096.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977023.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977022.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189100.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977020.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189102.1
PotD/PotF family extracellular solute-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189103.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977016.1
GO:0015572 - N-acetylglucosamine transmembrane transporter activity [Evidence IEA]
N-acetylglucosamine-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_014189106.1
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_014189107.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189108.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189109.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_014189110.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189111.1
GO:0005355 - glucose transmembrane transporter activity [Evidence IEA]; GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:1904659 - glucose transmembrane transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189112.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014189113.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189114.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189115.1
COORDINATES: protein motif:HMM:NF012876.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189117.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830208.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007849265.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189120.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189121.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189122.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189123.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189124.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189125.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403353.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189130.1
COORDINATES: similar to AA sequence:RefSeq:WP_007753588.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189132.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014189133.1
COORDINATES: similar to AA sequence:RefSeq:WP_008942846.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189136.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014328291.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189138.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189139.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189140.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017634.2
COORDINATES: protein motif:HMM:TIGR03908.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO:0009310 - amine catabolic process [Evidence IEA]
quinohemoprotein amine dehydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009542142.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
quinohemoprotein amine dehydrogenase maturation protein
COORDINATES: similar to AA sequence:RefSeq:WP_020193816.1
quinohemoprotein amine dehydrogenase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_008064145.1
quinohemoprotein amine dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012584623.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002728155.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549800.1
GO:0050032 - L-rhamnonate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018905551.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775557.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007589407.1
fumarylacetoacetate hydrolase family protein
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012363569.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241933.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241934.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241935.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241936.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241941.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241940.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168411.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241938.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241937.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188796.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188793.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188794.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188795.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977480.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012977479.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977478.1
COORDINATES: protein motif:HMM:NF013126.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: similar to AA sequence:RefSeq:WP_012976284.1
COORDINATES: similar to AA sequence:RefSeq:WP_008618098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976282.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004271747.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976278.1
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: similar to AA sequence:RefSeq:WP_012976277.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018940558.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978201.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978200.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014188551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188552.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188553.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978198.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188555.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188557.1
histidine kinase dimerization/phosphoacceptor domain -containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012978194.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978193.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978192.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019706040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634835.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209614.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007877404.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011004706.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976714.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188661.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188660.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188659.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976105.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188657.1
COORDINATES: similar to AA sequence:RefSeq:WP_007884605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976098.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188649.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188648.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188647.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188646.1
non-heme iron oxygenase ferredoxin subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010120368.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014188644.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_076612067.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612189.1
COORDINATES: protein motif:HMM:NF025611.2
COORDINATES: similar to AA sequence:RefSeq:WP_012974918.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611116.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558308.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970999.1
COORDINATES: similar to AA sequence:RefSeq:WP_013418737.1
COORDINATES: protein motif:HMM:NF024094.2
COORDINATES: similar to AA sequence:RefSeq:WP_007816397.1
COORDINATES: similar to AA sequence:RefSeq:WP_014618491.1
COORDINATES: similar to AA sequence:RefSeq:WP_005794876.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011583205.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209472.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012384756.1
COORDINATES: similar to AA sequence:RefSeq:WP_015720692.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932550.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013511135.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402319.1
COORDINATES: similar to AA sequence:RefSeq:WP_012255457.1
efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008552743.1
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_008965676.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010953889.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558307.1
COORDINATES: protein motif:HMM:NF016301.2
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: protein motif:HMM:NF015823.2
COORDINATES: similar to AA sequence:RefSeq:WP_006163162.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967013.1
COORDINATES: similar to AA sequence:RefSeq:WP_008054989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188922.1
osmoprotectant NAGGN system M42 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_014188921.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188920.1
N-acetylglutaminylglutamine amidotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014188919.1
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF016807.2
COORDINATES: similar to AA sequence:RefSeq:WP_014188915.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188914.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188913.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_014188912.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020817757.1
COORDINATES: similar to AA sequence:RefSeq:WP_014075106.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_014188909.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975747.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975728.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188906.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975727.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188904.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188903.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188901.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188900.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012975721.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_014188898.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188897.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188896.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188895.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014188894.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188893.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188892.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188890.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188889.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_014188888.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188887.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009492430.1
monovalent cation/H+ antiporter subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_014188885.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188884.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_014188883.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188882.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188881.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188880.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188879.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188878.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188877.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448592.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976226.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976228.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188871.1
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
dipeptide ABC transporter ATP-binding protein DppD
COORDINATES: similar to AA sequence:RefSeq:WP_014188870.1
COORDINATES: protein motif:HMM:NF033832.1
COORDINATES: protein motif:HMM:NF025708.2
COORDINATES: similar to AA sequence:RefSeq:WP_009110917.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_006327309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976233.1
COORDINATES: similar to AA sequence:RefSeq:WP_008633111.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976234.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188865.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188864.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188863.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188862.1
glutathione ABC transporter permease GsiC
COORDINATES: similar to AA sequence:RefSeq:WP_014188861.1
with GsiACD is involved in the transport of glutathione into the cell; incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
glutathione ABC transporter substrate-binding protein GsiB
COORDINATES: similar to AA sequence:RefSeq:WP_010930910.1
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188860.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188858.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015686108.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014197103.1
COORDINATES: similar to AA sequence:RefSeq:WP_014197104.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188855.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188854.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188853.1
COORDINATES: similar to AA sequence:RefSeq:WP_009028645.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188851.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188850.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188849.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188848.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188847.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188846.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976244.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188844.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188843.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188842.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003611936.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188840.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241806.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188838.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188837.1
COORDINATES: similar to AA sequence:RefSeq:WP_007881538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188835.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188834.1
COORDINATES: similar to AA sequence:RefSeq:WP_004260405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188832.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017677578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188830.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188829.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188828.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977336.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006612899.1
GO:0030429 - kynureninase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188824.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188823.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188822.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188821.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188820.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188819.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188817.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188816.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188815.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188814.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014188813.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188812.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188811.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188810.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188809.1
two-component system response regulator BtsR
COORDINATES: protein motif:HMM:NF019314.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
LytS/YhcK type 5TM receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976916.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188806.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_014199761.1
GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0008152 - metabolic process [Evidence IEA]; GO:0009853 - photorespiration [Evidence IEA]
PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (PF00702); Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014199760.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199759.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199758.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199754.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199753.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188804.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188803.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188802.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188801.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188800.1
GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]
GO:0008218 - bioluminescence [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188799.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014189144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189145.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189147.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014189148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189150.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189151.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189152.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976806.1
COORDINATES: similar to AA sequence:RefSeq:WP_018269218.1
COORDINATES: similar to AA sequence:RefSeq:WP_014075402.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_020480651.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012496049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976803.1
HPF/RaiA family ribosome-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189156.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014189157.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189158.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189159.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976938.1
COORDINATES: protein motif:HMM:NF025073.2
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_014413977.1
COORDINATES: protein motif:HMM:NF018011.2
COORDINATES: similar to AA sequence:RefSeq:WP_017372801.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022262.2
COORDINATES: protein motif:HMM:NF023411.2
COORDINATES: similar to AA sequence:RefSeq:WP_006485377.1
COORDINATES: protein motif:HMM:NF017850.2
COORDINATES: protein motif:HMM:NF016148.2
COORDINATES: protein motif:HMM:NF021627.2
COORDINATES: similar to AA sequence:RefSeq:WP_015916586.1
COORDINATES: similar to AA sequence:RefSeq:WP_016071750.1
Mu-like prophage major head subunit gpT family protein
COORDINATES: protein motif:HMM:NF036841.2
COORDINATES: protein motif:HMM:NF018704.2
COORDINATES: protein motif:HMM:NF016927.2
GO:0044423 - virion component [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020388.2
COORDINATES: protein motif:HMM:NF040129.1
COORDINATES: protein motif:HMM:NF025659.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189162.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189163.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014189164.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565119.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012977087.1
COORDINATES: similar to AA sequence:RefSeq:WP_015922939.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660797.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189169.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189170.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189171.1
COORDINATES: protein motif:HMM:NF024140.2
COORDINATES: similar to AA sequence:RefSeq:WP_012976326.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189173.1
GO:0047922 - gentisate 1,2-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189175.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189176.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189177.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189178.1
COORDINATES: similar to AA sequence:RefSeq:WP_010930265.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189180.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189181.1
COORDINATES: similar to AA sequence:RefSeq:WP_013812094.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189183.1
COORDINATES: protein motif:HMM:TIGR00573.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970336.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198923.1
COORDINATES: similar to AA sequence:RefSeq:WP_011617496.1
COORDINATES: similar to AA sequence:RefSeq:WP_006215987.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198920.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970341.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014199006.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976843.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189185.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189186.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189188.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189189.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189191.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189192.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189193.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390583.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189197.1
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
COORDINATES: similar to AA sequence:RefSeq:WP_014189198.1
heme utilization cystosolic carrier protein HutX
COORDINATES: similar to AA sequence:RefSeq:WP_014189199.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189200.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189201.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189202.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189204.1
ChuX/HutX family heme-like substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290813.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189207.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189208.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535753.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003535752.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189211.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189212.1
COORDINATES: similar to AA sequence:RefSeq:WP_010295224.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189213.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977124.1
COORDINATES: similar to AA sequence:RefSeq:WP_012752644.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189215.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189216.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189217.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189218.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189219.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009858351.1
COORDINATES: protein motif:HMM:NF019633.2
COORDINATES: similar to AA sequence:RefSeq:WP_006297037.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350129.1
COORDINATES: protein motif:HMM:NF018352.2
COORDINATES: similar to AA sequence:RefSeq:WP_012976540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976541.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763000.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015614 - ABC-type D-xylose transporter activity [Evidence IEA]; GO:0033222 - xylose binding [Evidence IEA]
GO:0015753 - D-xylose transmembrane transport [Evidence IEA]
D-xylose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189224.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189225.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189226.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014189227.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976546.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189229.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189230.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976549.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189232.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014189233.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189234.1
COORDINATES: similar to AA sequence:RefSeq:WP_016657747.1
COORDINATES: similar to AA sequence:RefSeq:WP_014239655.1
COORDINATES: similar to AA sequence:RefSeq:WP_014239654.1
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977253.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012977254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977256.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977257.1
COORDINATES: protein motif:HMM:NF021134.2
COORDINATES: similar to AA sequence:RefSeq:WP_014247032.1
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012975977.1
flagellar hook-basal body complex protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189245.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189246.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189247.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01411.1
GO:0043953 - protein transport by the Tat complex [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189248.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189249.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_014189250.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189251.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189252.1
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_014189253.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189254.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189262.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976560.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189264.1
15.10 : Adaptations to atypical conditions
COORDINATES: similar to AA sequence:RefSeq:WP_008621996.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189266.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189267.1