Corynebacterium marinum DSM 44953 plasmid pCmarinum1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium marinum DSM 44953
Submitted (22-MAY-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP007792.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nAssembly Name :: C.marinum_v12\nGenome Coverage :: 243.8x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 02:06:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,623\nCDSs (total) :: 2,555\nGenes (coding) :: 2,514\nCDSs (with protein) :: 2,514\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 12 of 41\nPseudo Genes (incomplete) :: 29 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 6 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: coastal sediment close to a coal-fired power station, Qingdao
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006841214.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003859509.1
COORDINATES: protein motif:HMM:NF016133.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011015523.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005531876.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859505.1
COORDINATES: similar to AA sequence:RefSeq:WP_012226214.1
hexameric tyrosine-coordinated heme protein
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019175580.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012359884.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006770493.1
COORDINATES: protein motif:HMM:NF019886.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015402078.1
COORDINATES: similar to AA sequence:RefSeq:WP_018296659.1
COORDINATES: similar to AA sequence:RefSeq:WP_013241084.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011896448.1
COORDINATES: similar to AA sequence:RefSeq:WP_002857208.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003860191.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011013963.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003859025.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113078.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004600969.1
GO:0016603 - glutaminyl-peptide cyclotransferase activity [Evidence IEA]
GO:0017186 - peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005279829.1
COORDINATES: similar to AA sequence:RefSeq:WP_005519148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923407.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003860224.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003847971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006841231.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006841230.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770489.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402251.1
COORDINATES: similar to AA sequence:RefSeq:WP_003860216.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003847987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018297431.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402255.1
COORDINATES: similar to AA sequence:RefSeq:WP_015453104.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770482.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011015522.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006768635.1
COORDINATES: similar to AA sequence:RefSeq:WP_015650353.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402270.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015402272.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015402273.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015402276.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006841222.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_015402278.1
COORDINATES: similar to AA sequence:RefSeq:WP_011013652.1
cytochrome c biogenesis CcdA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018021437.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014319625.1
COORDINATES: similar to AA sequence:RefSeq:WP_006284600.1
COORDINATES: similar to AA sequence:RefSeq:WP_005391208.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018296921.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011896427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011015526.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018296924.1
type II glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010080265.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009356304.1
beta-phosphoglucomutase family hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_018296926.1
COORDINATES: similar to AA sequence:RefSeq:WP_018296927.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006284591.1
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015402291.1
COORDINATES: similar to AA sequence:RefSeq:WP_018023047.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770466.1
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: similar to AA sequence:RefSeq:WP_014010414.1
COORDINATES: similar to AA sequence:RefSeq:WP_013348175.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011015537.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011015536.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859529.1
COORDINATES: similar to AA sequence:RefSeq:WP_003862064.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015650324.1
COORDINATES: similar to AA sequence:RefSeq:WP_011015533.1
COORDINATES: similar to AA sequence:RefSeq:WP_019158404.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859519.1
COORDINATES: similar to AA sequence:RefSeq:WP_018120907.1
COORDINATES: similar to AA sequence:RefSeq:WP_019158405.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011069213.1
IS1380-like element ISCli1 family transposase