Corynebacterium marinum DSM 44953 plasmid pCmarinum2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium marinum DSM 44953
Submitted (22-MAY-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP007791.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nAssembly Name :: C.marinum_v12\nGenome Coverage :: 243.8x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 02:06:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,623\nCDSs (total) :: 2,555\nGenes (coding) :: 2,514\nCDSs (with protein) :: 2,514\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 12 of 41\nPseudo Genes (incomplete) :: 29 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 6 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: coastal sediment close to a coal-fired power station, Qingdao
COORDINATES: similar to AA sequence:RefSeq:WP_019099815.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019099816.1
COORDINATES: similar to AA sequence:RefSeq:WP_011273194.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005295424.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015453134.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770511.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF012371.2
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003939268.1
COORDINATES: similar to AA sequence:RefSeq:WP_017836497.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013865273.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005881400.1
predicted Zn-dependent protease with a strongly conserved HExxH motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
DUF2268 domain-containing putative Zn-dependent protease
COORDINATES: protein motif:HMM:NF016334.2
COORDINATES: similar to AA sequence:RefSeq:WP_017838285.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012234.2