Corynebacterium marinum DSM 44953 plasmid pCmarinum2, complete sequence.
type: Entry
definition: Corynebacterium marinum DSM 44953 plasmid pCmarinum2, complete sequence.
sequence version: NZ_CP007791.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NZ_CP007791.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02800399
keyword: RefSeq
source: Corynebacterium marinum DSM 44953
organism: Corynebacterium marinum DSM 44953
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP007791.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nAssembly Name :: C.marinum_v12\nGenome Coverage :: 243.8x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 02:06:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,623\nCDSs (total) :: 2,555\nGenes (coding) :: 2,514\nCDSs (with protein) :: 2,514\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 12 of 41\nPseudo Genes (incomplete) :: 29 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 6 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 25857
topology: circular
so has quality: SO_0000988
location: 1..25857
location: region:1-25857:1
RO_0002162: 1224162

NZ_CP007791
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02800399
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Corynebacterium marinum DSM 44953
author: Schaffert, L.
author: Albersmeier, A.
author: Kalinowski, J.
author: Ruckert, C.
journal: Unpublished

2
title: Direct Submission
author: Schaffert, L.
author: Albersmeier, A.
author: Kalinowski, J.
author: Ruckert, C.
journal: Submitted (22-MAY-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25857:1
position: 25857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25857:1:source
so part of: sequence
organism: Corynebacterium marinum DSM 44953
mol type: genomic DNA
strain: DSM 44953
isolation source: coastal sediment
culture collection: DSM:44953
type material: type strain of Corynebacterium marinum
plasmid: pCmarinum2
country: China: coastal sediment close to a coal-fired power station, Qingdao
collection date: 2002

1224162
type: Taxonomy
SIO_000068: taxonomy

B840_RS13295
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13295
old locus tag: B840_12650
so part of: sequence
location: complement(join(24820..25857,1..57))
location: region:1-25857:-1
so has part: feature:1-57:-1:exon
so has part: feature:24820-25857:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25857:-1
position: 25857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-57:-1:exon

position:57:-1
position: 57
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24820-25857:-1:exon

position:24820:-1
position: 24820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

B840_RS13295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13295
old locus tag: B840_12650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019099815.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UvrD-helicase domain-containing protein
translation: MAMDKHLTLAVAGSRKTQGIVDACAAMPKDRRVLVLTYTTVNQNELRDRLSSQAGDHPHIEVAGWFSFLISNFVRPFLPFLYSGKRVRGFDFSSPPQRYLGNKDWNRYFNQHDEVRKVHLPQLVTRIEEASGRAGIRRLERMYDQIFIDEVQDLCGYDLEILKLLMSSRLSVEMVGDIRQAILATNQQEVKNKQFKFMNIWKWFQAEEAAGRLTITQRPQTWRCRPEIALLADSLFDSSWDFQKTLSLNSALTGHDGVFLVRPRDVGSYLARYEPLALRDSVNSAKAYNHLSPMNIGVSKGLGVPRVLIFPTGAIQQYIQQGKALEPQQAAKFYVAITRAEQSAAIVLDKAGNSDLPIWDPELV
SIO_010081: B840_RS13295
subclass of: SO_0000673
so part of: B840_RS13295
location: complement(join(24820..25857,1..57))
location: region:1-25857:-1
so has part: feature:1-57:-1:exon
so has part: feature:24820-25857:-1:exon

WP_244878200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-57:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:24820-25857:-1:exon

B840_RS12290
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12290
old locus tag: B840_12490
so part of: sequence
location: complement(44..1660)
location: region:44-1660:-1
so has part: feature:44-1660:-1:exon
subclass of: SO_0000010

position:44:-1
position: 44
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1660:-1
position: 1660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44-1660:-1:exon

B840_RS12290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12290
old locus tag: B840_12490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019099816.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIEKIRIKGYRKFRDATIVPNPRFNILVGENAAGKSTLLEALSLALTGRINGRPASEELNPYWFNQDDVSDFFKAREQGKPVALPEIQIEVFLVDREEFQRNLYGAHNSTIPTRECPGVCLRVIPNPDYKGEIELHLDSDTSILPVDYYMVEWRSFGDVPLFARPKEITTAIIDSRTIRSTNGVDFHLRQMLSDHLESSEKAAVSLAFRAVKERMTTEHLNEINQRMGTLAGSLDEQPLSLAMDQSARAGWDSSIVPHVAEVPFGMAGQGQQAAVKIALAMGHKASAAQVVMIEEPENHLSHTSLNKLLHHIEDLAVEGQQLFITTHSSFVLNRLGMDGLLFVTNGQISSMASVSPETVSYFKKLPGYDTLRMVLADRFVLVEGPSDEILFERFYRDIKHKFPIQDGVDVISMRGLALKRSLELAQALGKRCAALRDNDGKDPESLLEELGDLREPGLREVFIGKQGFGQTLEPQVLKVNTDDHLMRQILGVTERAVLETWMTNNKTDAALKIAEATENVTAPQYFIKAIEFITDGNG
SIO_010081: B840_RS12290
subclass of: SO_0000673
so part of: B840_RS12290
location: complement(44..1660)
location: region:44-1660:-1
so has part: feature:44-1660:-1:exon

WP_042622784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44-1660:-1:exon

B840_RS12295
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12295
so part of: sequence
location: complement(1813..4323)
location: region:1813-4323:-1
so has part: feature:1813-4323:-1:exon
subclass of: SO_0000010

position:1813:-1
position: 1813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4323:-1
position: 4323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1813-4323:-1:exon

B840_RS12295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011273194.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MIDQIATEFDLRAPNKEGLRQLVFHLTGTFDPLDPLVMHMATGAGKTYLMAAAVEYFRRQGIHHIMVVTPSLVVQNKTVQNFSQGSRRYVGGFQVAPDVVSPQSYDAWRVKQSSLFSGDETDPSMVFVFNVHQLVAPKKAQTSSTGTLEGQRTKIRTFQEDSGSLYDYLTELDDLIIIADESHLYGASAKAFNQALRDLTPAATIGLTASASKGDAVIYRYPLHQAITDGFVKTPVLVYRKSGYKGEQAEERQLRDALSLLRNKEAAYQTYLQDHPSRKAITPALFVVCSNVEHATQVAELLRGPGYCGSPQAVLQVDNQHDDEPTRKLLDDLDNPNSPVRVVVSVDKLKEGWDTKRIAVMCTLRAMASEVLTSQTMGRGLRLPFGTPTGYARIDQLDILAHTSFEELLNDEDILETFGLDEAVDGHVTGKDIVTPPPSSPKLPEVDVDQPVPHPTEEPAPLSGLQADPPEGGQESRMVHALQLDDEEEIAPVEPVFPVTVEINPQYAGITFTFPSSMMTETITPFHLKQVRDDEIERAARRVTDTGEVLHRKKIVVSADEQEITTQRVEDATVASALVDTDEVAKQLTRRVLGLQQITVNDANKKQLLNRIVPAFMAHAPVTEWTEKAKDSAVMELERLMRDKITAHARNTQTETTIIPVTLPIDQFFTLPIGQEVLDLLGEKQRGEFQLRRFYGPWDKGLFPAASFDSWSGEYLLAMKLNYAEDIVWWKRLYPHEKASIAYSTRDNYYPDFVARDRDGTFWIIEGKSDQGQDDTTVQRKREAAVDLVNELVSAPGFEDTSWGYLIAYETDVRTADSWEDLKTKTRPVVTKKYQI
SIO_010081: B840_RS12295
subclass of: SO_0000673
so part of: B840_RS12295
location: complement(1813..4323)
location: region:1813-4323:-1
so has part: feature:1813-4323:-1:exon

WP_244878201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1813-4323:-1:exon

B840_RS12300
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12300
so part of: sequence
location: complement(4360..6366)
location: region:4360-6366:-1
so has part: feature:4360-6366:-1:exon
subclass of: SO_0000010

position:4360:-1
position: 4360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6366:-1
position: 6366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4360-6366:-1:exon

B840_RS12300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12300
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005295424.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
translation: MEDCMGRRPQKLELTWFNKDKALIPTEEGKYGYTWVDSKDPRYCETHTLVIEDIIRGELSPKEDRITYSERADLLPTEDNLLILGESGDVLEALTRVPELAEKYVGEVKCVYIDPPFNTAQTFANYEDNLEHSIWLTMMRDRLIHLRQLLSDDGSIWIHLDDVENHRMRVLMDEIFGAANFVAEVVWQKADSPRSSSKGFSVDHDIILVYRKSETFTFNRLPRSAAANSRFSNPDNDPNGPWWDDNPTANKGDGGAGMCYAIQNPLTGEMQYPGRGRHWSLGQRDILAAMNEWAPYRLEDLHDEEHRAAIEGIPLSRAKTGIKALVLDVPVEEARELVEKRRQAGPLPRYLIRSKGSIGRKMYVPSTGMVPRTWWTNEEVGHNREAKAEIKALTPGTKPFATPKPERLLERIIHIASNPGDIVLDVFAGSGTTAAVAHKMGRRWVTCELLEDTMERFTRPRLARVINGEDPGGVTMATDLEPKIDRVKVPQKNTPEDMKDAVTLIGRVLQQEGLPTDDIAALTEARKLLAMRNKEVINWRGGGSFRVARLSPSCFDYDPNLDLVTLTEAATGQVLVESVAANLNFRLTPDHRYFHGVRGAMRLVVVEGRLDRAKVDDLIAHLADGEGLTIAATEIDDGVRQYLRSLGRGCRAVHVPSEIFTYSSAKEQ
SIO_010081: B840_RS12300
subclass of: SO_0000673
so part of: B840_RS12300
location: complement(4360..6366)
location: region:4360-6366:-1
so has part: feature:4360-6366:-1:exon

WP_244878202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4360-6366:-1:exon

B840_RS13990
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13990
so part of: sequence
location: complement(6488..6610)
location: region:6488-6610:-1
so has part: feature:6488-6610:-1:exon
subclass of: SO_0000010

position:6488:-1
position: 6488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6610:-1
position: 6610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6488-6610:-1:exon

B840_RS13990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKENYWHRQTAAYEDFVIDREFRTTMNQTLHLEDPDAEAI
SIO_010081: B840_RS13990
subclass of: SO_0000673
so part of: B840_RS13990
location: complement(6488..6610)
location: region:6488-6610:-1
so has part: feature:6488-6610:-1:exon

WP_280513149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6488-6610:-1:exon

B840_RS13300
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13300
old locus tag: B840_12540
so part of: sequence
location: complement(6941..8383)
location: region:6941-8383:-1
so has part: feature:6941-8383:-1:exon
subclass of: SO_0000010

position:6941:-1
position: 6941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8383:-1
position: 8383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6941-8383:-1:exon

B840_RS13300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13300
old locus tag: B840_12540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015453134.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSLPNDHVSGTTRHVEDLLFTGGLEDTPAGCTDRDALISHLGRDVLHGSRGRDFAAAYFTTKDGTRAPRMYRVDSDALGKCEYVQLTHKQYAAVLVVDIDIPGTSGGHPIHLNDEVKEKFSQLINHHLDPAWVGINPVNGKCQVIWLINPIYADKDGQSPHMALLAAATKTLGEWMGHDSHFSHRFSRSPFYTGDSPTAYRWYRQHHRVYRLGDLLTGVRSMIGQTQYSKPQQRFSSGRELINAVKARREEAERFKALAQDVETELAGQLDYYDPELVQGVRVLWVREGRAARDETAFRHALKTGHRLRQAGQRMTDAAIIDAYEQAYTVAQEVGSDGRKSEMPLMRDRQTMARRVRGYVTTSKNESYSFSSDVGQATNAERKALATMGRRGGKKAAERWETDPEGEYAQGRRAVMEKTHRKKRVQGQTSRAKIQALIGQAYVETGKLPTRKEIMAETGFSEATVKRHVRSLRQAGLLPQ
SIO_010081: B840_RS13300
subclass of: SO_0000673
so part of: B840_RS13300
location: complement(6941..8383)
location: region:6941-8383:-1
so has part: feature:6941-8383:-1:exon

WP_084603117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6941-8383:-1:exon

B840_RS13595
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13595
so part of: sequence
location: complement(8659..8841)
location: region:8659-8841:-1
so has part: feature:8659-8841:-1:exon
subclass of: SO_0000010

position:8659:-1
position: 8659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8841:-1
position: 8841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8659-8841:-1:exon

B840_RS13595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSTLTNGEDPKLNRRTTVYLKEETWKAMKLMTIETGESVSAYIERLIEKDVKRVQKKQQ
SIO_010081: B840_RS13595
subclass of: SO_0000673
so part of: B840_RS13595
location: complement(8659..8841)
location: region:8659-8841:-1
so has part: feature:8659-8841:-1:exon

WP_156971981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8659-8841:-1:exon

B840_RS12305
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12305
old locus tag: B840_12560
so part of: sequence
location: complement(8919..9503)
location: region:8919-9503:-1
so has part: feature:8919-9503:-1:exon
subclass of: SO_0000010

position:8919:-1
position: 8919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9503:-1
position: 9503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8919-9503:-1:exon

B840_RS12305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12305
old locus tag: B840_12560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770511.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRISFVHTKGGVGKTTSSIFLATAAARRGIVVELFDADPQGSAMRWAEIANHNGDPLEFPTEPINAKKLQSLKKTDDWQIIDTPPGSAAEIQAAIDTADLVIVPTHPSPLDIDRVWPTLDTLTHKNAAVLLIGVHERRRLYQETRDVFEDQGIQTFASFVPEREDIKATFGTNPHELYTFDEICEEILGIEEMF
SIO_010081: B840_RS12305
subclass of: SO_0000673
so part of: B840_RS12305
location: complement(8919..9503)
location: region:8919-9503:-1
so has part: feature:8919-9503:-1:exon

WP_042622778.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8919-9503:-1:exon

B840_RS13600
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
gene: mobF
locus tag: B840_RS13600
old locus tag: B840_12565
so part of: sequence
location: complement(9832..13314)
location: region:9832-13314:-1
so has part: feature:9832-13314:-1:exon
subclass of: SO_0000010

position:9832:-1
position: 9832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13314:-1
position: 13314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9832-13314:-1:exon

B840_RS13600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
gene: mobF
locus tag: B840_RS13600
old locus tag: B840_12565
inference: COORDINATES: protein motif:HMM:NF041492.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MLTIAKMHGDSVAYYESTVTTSDDKVSSPDDYYSEDGSQPATAWIQARTEAQASAVATALGVKNGAQVNGADVGQWFNHALAPSGHKLGRAPKSSGVPGFDLTFCAPKSVSLIWGLTNDTDVRSTVDRAHHRAVTTALSYLSEHAGYTRRADDHDRSAMIIDRVEALSGVRYEHRTSRAGDPHLHAHVLLANKQLCRDGKWRALDGVSLYHEARAAGTIYQAVLREELSRMLGVAWADTVHGCAEIVGLDDRGLIEDFSTRAREIDQWAADNGVGSDAAFERIGQKKTRQVKDLDTPLSELEQNWKARVAETAASQFVAALSPHSHSPQPVALPTVDEVLEAVTRERSTFTRADVVEAATELLPVGAVAAEQIYDTVEHLADQVCGGQVAWTVTPEKDRQVDRSAREGSQRFTSEAVVEEVNRGIDLATTVTGLGVSSSMIAPVEGQLSADQAEAMRAVVSSRYLASVVIAPAGAGKTSSLKAARKAWEQAGKQVIGLAPTGKAADVMVGENVAHSSSTLARVLRGVEDQDVEQAVATLGWTTDHVIVVDEAGMVSTPEMVRVLELAHAADARVVLVGDPYQYGAVKARGGLLATLAHEVPDAVELREVFRQHDEKERVASKRLRTGVLPDVERAADFYAGASRLHAGSVTAMLDDALAGWREDVAAGKDSLLVASTHDYVDALNRAAQQTMIAAGVVDGAEAIELAAGQYAHVGDTILTRRNDYELTTNSGDVVRNGQRWQVEAIDGDGFVLARRLDDTAATVRLHPAYLAEHVQLGYASTGHAAQGATVDVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGDSDTGHGTTTPTQRRESAQYARDLLVQAATRSHSDQSPHEVHRQARLDWGLSRLSSNLPTGESPFRGTRMAQVVDQRAEKRLERVQEFYATSNTAVRVKQAVKRARDKDRTDTLSSISGVDQPFSADYLSMSPEELSATMQKQMQEPAQRKKTPHEEEKARISAKIEHCEQEVSDLRAQVSELELARRDADRELSQANRHIYELDNRIHAKEVEREQRGFLAKAFKPREGLDQIEQLMIERDQQQIYRDQCEHKVADVKADLDQARTAYQTAQDKHVDAVQELSSVNLNPLLLHDGELNLAESHHDDTAADDYDHTSSWEHSSHNDNGMDL
SIO_010081: B840_RS13600
subclass of: SO_0000673
so part of: B840_RS13600
location: complement(9832..13314)
location: region:9832-13314:-1
so has part: feature:9832-13314:-1:exon

WP_156971982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9832-13314:-1:exon

B840_RS13315
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13315
old locus tag: B840_12570
so part of: sequence
location: 13644..14576
location: region:13644-14576:1
so has part: feature:13644-14576:1:exon
subclass of: SO_0000010

position:13644:1
position: 13644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14576:1
position: 14576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13644-14576:1:exon

B840_RS13315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13315
old locus tag: B840_12570
EC number: 3.1.1.103
inference: COORDINATES: protein motif:HMM:NF012371.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine hydrolase domain-containing protein
translation: MPLNRPVYAACLATVGPAGTRIATIGCDLQKTFHIGSISKALNGLIYTDMVQTRLISPHDRLEEHLPLAGTAAGEATLESCLTHTSGLPATGGGIRSAARALGAVLTGGDPQPENLDDLMKQLRRSRIRHPGRFSYSNLAASALGHALAAADGADYPTLVRNRLTIPLGCPRLRAQQPAQRNLPHDLNALTVWGTDQLPWTGQGYGPAGVIRGSAHDFATVMSTLLADDCVYEDAFRVRFTDDTESVAAGWFVEDKSDRTLVWHNGYASGFGAHMVLDRQRRRGAFISVVSPYPDPDIEPVAMTMLDAAV
SIO_010081: B840_RS13315
subclass of: SO_0000673
so part of: B840_RS13315
location: 13644..14576
location: region:13644-14576:1
so has part: feature:13644-14576:1:exon

WP_168938200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13644-14576:1:exon

B840_RS12320
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12320
so part of: sequence
location: complement(14622..15437)
location: region:14622-15437:-1
so has part: feature:14622-15437:-1:exon
subclass of: SO_0000010

position:14622:-1
position: 14622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15437:-1
position: 15437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14622-15437:-1:exon

B840_RS12320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003939268.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSRDFIVTKEHRRFVEFANAIRKDTTIGICHGEAGVGKTQSARRYAHWDTLGTFIDEWGPRSESDLAIYAAAHRARTVFYTPEVQPKYRTLIKDIEFYRGKLDVCIMEHLMATGQRDRLHMRRSSGEKLTQLIIIDEAERLPPTALEMLRDIHDRDGVAIMFIGMPGIDQRFRHYPQLFSRLGFSHRYRALGKDELLFVLNRHYKRLGRELDPEDFTDAQAIAAIERLTRGNFRVVERLFPQIKRVLKINELETITDDVIEAAASTLVLGH
SIO_010081: B840_RS12320
subclass of: SO_0000673
so part of: B840_RS12320
location: complement(14622..15437)
location: region:14622-15437:-1
so has part: feature:14622-15437:-1:exon

WP_042622780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14622-15437:-1:exon

B840_RS12325
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12325
old locus tag: B840_12590
so part of: sequence
location: complement(15434..16855)
location: region:15434-16855:-1
so has part: feature:15434-16855:-1:exon
subclass of: SO_0000010

position:15434:-1
position: 15434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16855:-1
position: 16855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15434-16855:-1:exon

B840_RS12325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12325
old locus tag: B840_12590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017836497.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mu transposase C-terminal domain-containing protein
translation: MDEMQRWEILRLHIEDGITLTDLARSTGISTRTLSRWAARYRADGIHGLRTTTRSDAGAHRISAELVAYIEHLGLTRPRPSMAALHRLVNSRAQQLSVKPPSYATVRGIIQALDPAMVTLALEGPASYRDRHELVYRHRAERPNAIWQADHTQLDILIQNPDGTPTRPWLTIIIDDYSRAVCGYMVTTTAPSAMNTALALRQAIWRKTDPTWAMCGIPDVLYVDHGSDFTSGHITYTTTALKIRIIHSTIARPQGRGKIERFFSTVNTELLTTLPGHLAPGVRNPHPVLDLTSLDTAVGEFISSYNQRTHSSINTSPKAAWIGRGWIPRMPENLEELDGLLLRVSTHRRVQRDGIHFQGQRYLSPTLAPFVGHDVTIRYDPRDLSEIRVYDHDTLLCVAVDEDHPNQRYSLADIQAARRRRRRQLRAGINERIPIHESHPTDLSPVNPDVSAEAPRPRGRTSRLRTYEEDLSP
SIO_010081: B840_RS12325
subclass of: SO_0000673
so part of: B840_RS12325
location: complement(15434..16855)
location: region:15434-16855:-1
so has part: feature:15434-16855:-1:exon

WP_042622786.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15434-16855:-1:exon

B840_RS12330
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12330
so part of: sequence
location: complement(16891..17490)
location: region:16891-17490:-1
so has part: feature:16891-17490:-1:exon
subclass of: SO_0000010

position:16891:-1
position: 16891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17490:-1
position: 17490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16891-17490:-1:exon

B840_RS12330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013865273.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRLLGYTRVSTVGQDPTLQHDALVTAGVQDRDVFSDVTSGAKNAIERPGMKKLLAYAQPGDTVVVWRIDRLGRSLLDVLNTVNLLREREVKIKSVSDGIDPETSSGRLMLGMLGTLAEYERELITERVNAGIAAAKAQGTRFGRPPVDPEVVDRKLAIVAEERAKGRSAEDAASMVGWSRATLYRHLQGAKRRQSALPA
SIO_010081: B840_RS12330
subclass of: SO_0000673
so part of: B840_RS12330
location: complement(16891..17490)
location: region:16891-17490:-1
so has part: feature:16891-17490:-1:exon

WP_042622781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16891-17490:-1:exon

B840_RS12335
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12335
old locus tag: B840_12605
so part of: sequence
location: complement(17680..18579)
location: region:17680-18579:-1
so has part: feature:17680-18579:-1:exon
subclass of: SO_0000010

position:17680:-1
position: 17680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18579:-1
position: 18579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17680-18579:-1:exon

B840_RS12335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12335
old locus tag: B840_12605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005881400.1
note: predicted Zn-dependent protease with a strongly conserved HExxH motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2268 domain-containing putative Zn-dependent protease
translation: MNIDIIDTAAAMTRVFDVAPEHRRDLIRKMWSPMNGMYHFVPGEMDLAVIHKQNFGFPENGPEEELRESLDTLIRANAWERMHHALERGIETLKTANPDLHIPDLKVLLLLGDPTNRHFMEEVKGLSAFGGISGYIVISVWPTIDVLNRLEAIVVHELHHNVRYSPGGVVWDPVTVTVGEHVVAEGLADVFATELYGSHGYTHFVDDQTRNDDSVLAKVASGLQVTGMQDFAAWVLGDKTAQLFGAEPVGLPTGAGYAAGVRLVSEYLHLHGGTAASNVHTPVETVLSDVLPRLGLGDE
SIO_010081: B840_RS12335
subclass of: SO_0000673
so part of: B840_RS12335
location: complement(17680..18579)
location: region:17680-18579:-1
so has part: feature:17680-18579:-1:exon

WP_042622782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17680-18579:-1:exon

B840_RS12340
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS12340
so part of: sequence
location: 18908..19444
location: region:18908-19444:1
so has part: feature:18908-19444:1:exon
subclass of: SO_0000010

position:18908:1
position: 18908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19444:1
position: 19444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18908-19444:1:exon

B840_RS12340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS12340
inference: COORDINATES: protein motif:HMM:NF016334.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside 6-adenylyltransferase
translation: MDFTLIRIDEERGVYDRPFTVLLDKDEVAGDFTLCAPTVVGPTQAVFDESANWAGAAVLMTAKAIMRDEPWSVMMRDADFKVELLRMIEWDHILRYGSSRDVRYLGTQMRSWMDIGVQHVLDTCTVTYGADNRDALSAGIEFFSRLSHQVAGEGGLAPFPFERIETEVLRIFSASSWA
SIO_010081: B840_RS12340
subclass of: SO_0000673
so part of: B840_RS12340
location: 18908..19444
location: region:18908-19444:1
so has part: feature:18908-19444:1:exon

WP_052227360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18908-19444:1:exon

B840_RS12345
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
gene: erm
locus tag: B840_RS12345
so part of: sequence
location: 19726..20517
location: region:19726-20517:1
so has part: feature:19726-20517:1:exon
subclass of: SO_0000010

position:19726:1
position: 19726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20517:1
position: 20517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19726-20517:1:exon

B840_RS12345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
gene: erm
locus tag: B840_RS12345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017838285.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 23S ribosomal RNA methyltransferase Erm
translation: MPTYRPNKGRHENGQNYLVNKSMIKKVVDLVPVSASVPVIEIGPGHGALTFPLQDRVLATGGSLTAIEIDPASVRWLEERLRPEVHLYEQDVLDFVLPDGPHVLVGNLPFHLTTAILRHVLHSPGWTHAVFLVQWEVARRRAGVGGATMMTAQWWPWFDFEQHGRIPSTHFRPRPTVDAGVLVMRRREEPLVNWSERARYASFVHAVFTGKGRGIADIVSRVVGRRRERRCAEVLREAGVPANALPKQLDAGQWATLFKAVGR
SIO_010081: B840_RS12345
subclass of: SO_0000673
so part of: B840_RS12345
location: 19726..20517
location: region:19726-20517:1
so has part: feature:19726-20517:1:exon

WP_039586621.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19726-20517:1:exon

B840_RS13325
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13325
pseudo: true
so part of: sequence
location: 20968..21693
location: region:20968-21693:1
so has part: feature:20968-21693:1:exon
subclass of: SO_0000010

position:20968:1
position: 20968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21693:1
position: 21693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20968-21693:1:exon

B840_RS13325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: B840_RS13325
subclass of: SO_0000673
so part of: B840_RS13325
location: 20968..21693
location: region:20968-21693:1
so has part: feature:20968-21693:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20968-21693:1:exon

B840_RS13330
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13330
old locus tag: B840_12640
so part of: sequence
location: 22041..23216
location: region:22041-23216:1
so has part: feature:22041-23216:1:exon
subclass of: SO_0000010

position:22041:1
position: 22041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23216:1
position: 23216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22041-23216:1:exon

B840_RS13330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13330
old locus tag: B840_12640
inference: COORDINATES: protein motif:HMM:NF012234.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MPPFIAKIDHLTATHLPILRLPSGVLLPGNDDVDALDVTVGDVVIYNNDWEKSSEQSWEPQVNVGLIEQIDERSVIFRTTQGLMERTLPVGQEAELGNVVLFNESRELIEVRKRTPPQSSMSEETVDITSFRKELDLDRHTWSSFAGSPETLQEARDIIAVHANPNARAKLLDLGVSPVRGILFEGPPGTGKTFLAQIMAAQSRASFYLVTTASLGGRLVGESEQRLEAIYADAAKQDMSIIFVDEIEVLTKDRAGEYDHGSRLVNVFLTNMDGVSAPDNVITIGTTNRVDDIDKALRRPGRFDREVTFRNPNREDRLAILTSQSRKTADNLDYEAVADATEGWTAAELGAIWQHAGELTVIAERNNIYNDYFLMGFERAQTARTRRLNGK
SIO_010081: B840_RS13330
subclass of: SO_0000673
so part of: B840_RS13330
location: 22041..23216
location: region:22041-23216:1
so has part: feature:22041-23216:1:exon

WP_084603118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22041-23216:1:exon

B840_RS13605
type: Gene
subclass of: SO_0000704
RO_0002162: 1224162
locus tag: B840_RS13605
old locus tag: B840_12645
so part of: sequence
location: 23546..24544
location: region:23546-24544:1
so has part: feature:23546-24544:1:exon
subclass of: SO_0000010

position:23546:1
position: 23546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24544:1
position: 24544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23546-24544:1:exon

B840_RS13605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1224162
locus tag: B840_RS13605
old locus tag: B840_12645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQIELVASEQSLFRDFLDREASAGTDSQIWDGTPDATGKIRVTGRPFQRGELIQIRIRLQADLTYRISSFASAISDLAEGAPEMNFPHTADTLQIAEVLRQLLIDQAPIDAELIDWGWDPTRENLIPKAESKEPLRLVGLTQIDNYWIDVRRALFDGAECMALVRVSEDVPSENWSPLKLFDAIRGLSGFDNLDESINQLRAGFASPPAPTNVSLEPLTKALTNYLFKMASEEESENLNPQIKHIATTYAPSLPSASVISEAFNDIDRLLRLMGSPPADSNVIAEERAAALLDANLSTDGATIIGVTPEKPVSPPTPPTHQYIVGEIIALYW
SIO_010081: B840_RS13605
subclass of: SO_0000673
so part of: B840_RS13605
location: 23546..24544
location: region:23546-24544:1
so has part: feature:23546-24544:1:exon

WP_156971983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23546-24544:1:exon