Xanthomonas cassavae CFBP 4642 plasmid unnamed1, whole genome shotgun sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642
Submitted (24-JUN-2013) Laboratoire des Interactions Plantes Micro-organismes, INRA, Chemin de Borderouge, Castanet-Tolosan 31200, France
REFSEQ INFORMATION: The reference sequence is identical to\nCM002140.1.\nReference-guided assembly based on Xanthomonas axonopodis pv. citri\nstr. 306 plasmid pXAC64 deposited in NC_003922.\nBacteria and source DNA available from CFBP EmerSys, IRHS, INRA 42,\nRue Georges Morel, BP 60057 49071 Beaucouz Cedex, France.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.04; Velvet v. 1.2.02\nAssembly Name :: 20120625\nGenome Coverage :: 3045.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 15:09:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,756\nCDSs (total) :: 4,649\nGenes (coding) :: 4,322\nCDSs (with protein) :: 4,322\nGenes (RNA) :: 107\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 53\nPseudo Genes (total) :: 327\nCDSs (without protein) :: 327\nPseudo Genes (ambiguous residues) :: 0 of 327\nPseudo Genes (frameshifted) :: 141 of 327\nPseudo Genes (incomplete) :: 219 of 327\nPseudo Genes (internal stop) :: 51 of 327\nPseudo Genes (multiple problems) :: 76 of 327\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_017172800.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017173683.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017173684.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017154703.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173685.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017154701.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017172835.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172836.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154725.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173688.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736071.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004167341.1
COORDINATES: similar to AA sequence:RefSeq:WP_007970353.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017158739.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003879.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154716.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173678.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172840.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154712.1
COORDINATES: similar to AA sequence:RefSeq:WP_199285673.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005918227.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918229.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_005918231.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154897.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172642.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007966864.1
COORDINATES: similar to AA sequence:RefSeq:WP_017161529.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158795.1
COORDINATES: similar to AA sequence:RefSeq:WP_011345593.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005917872.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164708.1
COORDINATES: similar to AA sequence:RefSeq:WP_017157753.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019303585.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017158763.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017160511.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172638.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010379618.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167724.1
COORDINATES: similar to AA sequence:RefSeq:WP_005997165.1
COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014504331.1
COORDINATES: similar to AA sequence:RefSeq:WP_007969282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011036796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477429.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005918078.1
COORDINATES: similar to AA sequence:RefSeq:WP_007967576.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167344.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918089.1
COORDINATES: similar to AA sequence:RefSeq:WP_014508712.1
COORDINATES: similar to AA sequence:RefSeq:WP_009667782.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113411.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011052114.1
type III secretion system effector avirulence protein AvrXacE2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001358886.1
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007971051.1
COORDINATES: similar to AA sequence:RefSeq:WP_017157773.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105051.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_017154710.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154709.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154707.1