Lactobacillus helsingborgensis strain ESL0183 plasmid unnamed.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Reference genomes for bee gut microbiota database
Submitted (22-MAY-2018) Department of Fundamental Microbiology, University of Lausanne, Batiment Biophore, Lausanne 1015, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP029545.1.\nBacteria and source DNA available from Philipp Engel, University of\nLausanne, department of fundamental microbiology.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/23/2023 02:37:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,757\nCDSs (total) :: 1,686\nGenes (coding) :: 1,673\nCDSs (with protein) :: 1,673\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 13\nCDSs (without protein) :: 13\nPseudo Genes (ambiguous residues) :: 0 of 13\nPseudo Genes (frameshifted) :: 5 of 13\nPseudo Genes (incomplete) :: 5 of 13\nPseudo Genes (internal stop) :: 6 of 13\nPseudo Genes (multiple problems) :: 3 of 13\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Rgg/GadR/MutR family transcriptional regulator
COORDINATES: protein motif:HMM:NF017000.2
lipopolysaccharide core heptose(II) kinase RfaY
COORDINATES: similar to AA sequence:RefSeq:WP_012845425.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005722279.1