Clostridium bornimense strain M2/40 chromosome M2/40_rep2, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete genome sequence of Clostridum sp. M2/40
Submitted (27-NOV-2013) GRIM, CeBiTec, 33615, NRW, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nHG917869.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 01:10:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,383\nCDSs (total) :: 3,298\nGenes (coding) :: 3,277\nCDSs (with protein) :: 3,277\nGenes (RNA) :: 85\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 9 of 21\nPseudo Genes (incomplete) :: 14 of 21\nPseudo Genes (internal stop) :: 1 of 21\nPseudo Genes (multiple problems) :: 2 of 21\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002581756.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017416272.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: similar to AA sequence:RefSeq:WP_012450246.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016296.2
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014314092.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF021489.2
COORDINATES: similar to AA sequence:RefSeq:WP_006354332.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002581303.1
COORDINATES: protein motif:HMM:NF015534.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014792803.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003460381.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025156.2
COORDINATES: similar to AA sequence:RefSeq:WP_003486120.1
COORDINATES: similar to AA sequence:RefSeq:WP_002580494.1
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF012371.2
GO:0016787 - hydrolase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008680290.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571559.1
COORDINATES: protein motif:HMM:NF014414.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003373891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008402707.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: similar to AA sequence:RefSeq:WP_020815554.1
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_009064835.1
COORDINATES: similar to AA sequence:RefSeq:WP_001082285.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_009987432.1
COORDINATES: similar to AA sequence:RefSeq:WP_014827481.1
COORDINATES: similar to AA sequence:RefSeq:WP_007059348.1
COORDINATES: similar to AA sequence:RefSeq:WP_004072580.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004847374.1
COORDINATES: similar to AA sequence:RefSeq:WP_007285810.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017825528.1
COORDINATES: similar to AA sequence:RefSeq:WP_005358869.1
GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006565 - L-serine catabolic process [Evidence IEA]
L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004840279.1
L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011721399.1
COORDINATES: similar to AA sequence:RefSeq:WP_018590044.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015512901.1
COORDINATES: similar to AA sequence:RefSeq:WP_017211075.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014117361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004606487.1
COORDINATES: similar to AA sequence:RefSeq:WP_010966758.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF014869.2
COORDINATES: protein motif:HMM:NF019145.2
COORDINATES: similar to AA sequence:RefSeq:WP_012424312.1
COORDINATES: similar to AA sequence:RefSeq:WP_015514730.1
COORDINATES: similar to AA sequence:RefSeq:WP_002583090.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF037393.2
COORDINATES: similar to AA sequence:RefSeq:WP_016439812.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009003797.1
COORDINATES: protein motif:HMM:NF012377.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890802.1
COORDINATES: protein motif:HMM:NF012551.2
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: protein motif:HMM:NF025636.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025160.2
COORDINATES: protein motif:HMM:NF025644.2
COORDINATES: protein motif:HMM:NF025628.2
COORDINATES: similar to AA sequence:RefSeq:WP_019278423.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017826416.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004608041.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003358857.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969170.1
COORDINATES: similar to AA sequence:RefSeq:WP_003451145.1
GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_004845245.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004845246.1
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002579882.1
sulfate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003427999.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
sulfate ABC transporter permease subunit CysT
COORDINATES: similar to AA sequence:RefSeq:WP_015523475.1
sulfate ABC transporter permease subunit CysW
COORDINATES: similar to AA sequence:RefSeq:WP_003415189.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sulfate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008428104.1
adenylyl-sulfate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_002579887.1
COORDINATES: similar to AA sequence:RefSeq:WP_012060344.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_004851733.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003424961.1
COORDINATES: protein motif:HMM:NF012745.2
bifunctional glycosyltransferase family 2/GtrA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004611784.1
phosphodiester glycosidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007595038.1
COORDINATES: protein motif:HMM:NF016060.2
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_008753020.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006428872.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: similar to AA sequence:RefSeq:WP_012199567.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005338290.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_004606623.1
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: similar to AA sequence:RefSeq:WP_005338286.1
GO:0017118 - lipoyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009249634.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008374392.1
COORDINATES: similar to AA sequence:RefSeq:WP_009248131.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013381621.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018589307.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003411542.1
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: protein motif:HMM:NF025159.2
COORDINATES: similar to AA sequence:RefSeq:WP_003452919.1
COORDINATES: similar to AA sequence:RefSeq:WP_010076613.1
phosphatidylinositol-specific phospholipase C
COORDINATES: protein motif:HMM:NF025150.2
COORDINATES: similar to AA sequence:RefSeq:WP_012450122.1
COORDINATES: similar to AA sequence:RefSeq:WP_003374475.1
COORDINATES: similar to AA sequence:RefSeq:WP_005211647.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012705362.1
COORDINATES: protein motif:HMM:NF040016.1
COORDINATES: similar to AA sequence:RefSeq:WP_002581250.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012620562.1
COORDINATES: similar to AA sequence:RefSeq:WP_010966218.1
COORDINATES: similar to AA sequence:RefSeq:WP_006566586.1
COORDINATES: similar to AA sequence:RefSeq:WP_003415615.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF013793.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009170298.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002568299.1
COORDINATES: similar to AA sequence:RefSeq:WP_003446984.1
COORDINATES: protein motif:HMM:TIGR00036.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_013655624.1
COORDINATES: similar to AA sequence:RefSeq:WP_017209725.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013282526.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013658243.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007286450.1
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF019310.2
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003403264.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012060230.1
COORDINATES: similar to AA sequence:RefSeq:WP_005214321.1
COORDINATES: similar to AA sequence:RefSeq:WP_002581445.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010299188.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:NF015336.2
GO:2001070 - starch binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003372958.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017826778.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012743833.1
COORDINATES: similar to AA sequence:RefSeq:WP_012422777.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003412837.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010074954.1
COORDINATES: similar to AA sequence:RefSeq:WP_013625950.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009086 - methionine biosynthetic process [Evidence IEA]
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
LPXTG cell wall anchor domain-containing protein
COORDINATES: protein motif:HMM:NF014078.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF024930.2
COORDINATES: similar to AA sequence:RefSeq:WP_003369124.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015615164.1
COORDINATES: protein motif:HMM:NF038196.1
N-terminal region resembles flavodoxins. C-terminal ferrodoxin region binds two 4Fe-4S clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017415232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004059862.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003399323.1
COORDINATES: similar to AA sequence:RefSeq:WP_016282109.1
COORDINATES: similar to AA sequence:RefSeq:WP_015392377.1
COORDINATES: similar to AA sequence:RefSeq:WP_009460432.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012201016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003373872.1
COORDINATES: similar to AA sequence:RefSeq:WP_003477365.1
COORDINATES: similar to AA sequence:RefSeq:WP_012425789.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016661 - oxidoreductase activity, acting on other nitrogenous compounds as donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016289997.1
COORDINATES: similar to AA sequence:RefSeq:WP_015569001.1
COORDINATES: similar to AA sequence:RefSeq:WP_002573949.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01750
ZMP/ZTP riboswitches appear to regulate genes involved in one-carbon metabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
5-aminoimidazole-4-carboxamide ribonucleotide (ZMP)/ 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-triphosphate (ZMT)
COORDINATES: similar to AA sequence:RefSeq:WP_003411984.1
GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
phosphoribosylaminoimidazolecarboxamide formyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012620633.1
COORDINATES: similar to AA sequence:RefSeq:WP_003364608.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014080447.1
COORDINATES: similar to AA sequence:RefSeq:WP_003492533.1
COORDINATES: similar to AA sequence:RefSeq:WP_015925032.1
COORDINATES: similar to AA sequence:RefSeq:WP_010073587.1
COORDINATES: similar to AA sequence:RefSeq:WP_003432109.1
COORDINATES: similar to AA sequence:RefSeq:WP_018590738.1
COORDINATES: similar to AA sequence:RefSeq:WP_007887523.1
COORDINATES: protein motif:HMM:NF024157.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_010077395.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426774.1
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: similar to AA sequence:RefSeq:WP_007490721.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323072.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395264.1
COORDINATES: similar to AA sequence:RefSeq:WP_003370308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012423933.1
COORDINATES: similar to AA sequence:RefSeq:WP_012423026.1
COORDINATES: similar to AA sequence:RefSeq:WP_017352334.1
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010075474.1
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: similar to AA sequence:RefSeq:WP_014520368.1
COORDINATES: protein motif:HMM:NF012340.2
carbohydrate binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013273857.1
COORDINATES: similar to AA sequence:RefSeq:WP_017825751.1
COORDINATES: protein motif:HMM:NF024905.2
COORDINATES: similar to AA sequence:RefSeq:WP_008421179.1
COORDINATES: similar to AA sequence:RefSeq:WP_010076479.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002458050.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011590077.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003363098.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
TdeIII family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF020926.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014520131.1
ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_005211159.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015523466.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010076683.1
COORDINATES: similar to AA sequence:RefSeq:WP_010076682.1
COORDINATES: similar to AA sequence:RefSeq:WP_010076681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004624598.1
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006567023.1
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: protein motif:HMM:NF024794.2
COORDINATES: protein motif:HMM:NF039785.1
COORDINATES: similar to AA sequence:RefSeq:WP_004624679.1
COORDINATES: similar to AA sequence:RefSeq:WP_004624625.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012158532.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009988011.1
GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012451595.1
COORDINATES: similar to AA sequence:RefSeq:WP_003411964.1
COORDINATES: similar to AA sequence:RefSeq:WP_005216261.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003356477.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003407576.1
COORDINATES: similar to AA sequence:RefSeq:WP_016626297.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_008428130.1
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_002591679.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013658986.1
COORDINATES: similar to AA sequence:RefSeq:WP_013658985.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]
GO:0042918 - alkanesulfonate transport [Evidence IEA]
aliphatic sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002581917.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003372758.1
GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010963356.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008680718.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002581734.1
iron-hydroxamate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008680714.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002581732.1
COORDINATES: similar to AA sequence:RefSeq:WP_016205587.1
COORDINATES: similar to AA sequence:RefSeq:WP_003430897.1
COORDINATES: protein motif:HMM:TIGR04215.1
COORDINATES: similar to AA sequence:RefSeq:WP_009538250.1
(deoxy)nucleoside triphosphate pyrophosphohydrolase
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: similar to AA sequence:RefSeq:WP_013657854.1
COORDINATES: similar to AA sequence:RefSeq:WP_015393650.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002581443.1
COORDINATES: similar to AA sequence:RefSeq:WP_005209758.1
COORDINATES: similar to AA sequence:RefSeq:WP_009289614.1
COORDINATES: similar to AA sequence:RefSeq:WP_013724797.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
tRNA-dihydrouridine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010966712.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015391235.1
COORDINATES: similar to AA sequence:RefSeq:WP_003412471.1
glutamate/gamma-aminobutyrate family transporter YjeM
COORDINATES: similar to AA sequence:RefSeq:WP_003471758.1
COORDINATES: similar to AA sequence:RefSeq:WP_012103711.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016286347.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004055227.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025854.2
COORDINATES: similar to AA sequence:RefSeq:WP_002598056.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012058288.1
GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]
GO:0072488 - ammonium transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008418757.1
COORDINATES: similar to AA sequence:RefSeq:WP_002579946.1
gamma-glutamylcyclotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003454554.1
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012451043.1
COORDINATES: similar to AA sequence:RefSeq:WP_003492592.1
COORDINATES: similar to AA sequence:RefSeq:WP_003480504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008679827.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015558217.1
COORDINATES: similar to AA sequence:RefSeq:WP_005342735.1
COORDINATES: similar to AA sequence:RefSeq:WP_009254073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003462513.1
COORDINATES: similar to AA sequence:RefSeq:WP_003467290.1
COORDINATES: similar to AA sequence:RefSeq:WP_003462430.1
COORDINATES: similar to AA sequence:RefSeq:WP_003467311.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011010353.1
COORDINATES: similar to AA sequence:RefSeq:WP_004452005.1
COORDINATES: protein motif:HMM:NF019844.2
GO:0070064 - proline-rich region binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005541180.1
COORDINATES: similar to AA sequence:RefSeq:WP_009172593.1
COORDINATES: similar to AA sequence:RefSeq:WP_012450979.1
heavy metal-associated domain-containing protein
COORDINATES: protein motif:HMM:TIGR02227.1
COORDINATES: protein motif:HMM:NF020337.2
COORDINATES: similar to AA sequence:RefSeq:WP_008676020.1
COORDINATES: protein motif:HMM:NF023096.2
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: protein motif:HMM:NF016205.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017413252.1
COORDINATES: protein motif:HMM:NF017927.2
COORDINATES: similar to AA sequence:RefSeq:WP_005213245.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_003435002.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008428697.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
[FeFe] hydrogenase H-cluster radical SAM maturase HydG
GO:0009986 - cell surface [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008677553.1
COORDINATES: similar to AA sequence:RefSeq:WP_005216456.1
COORDINATES: similar to AA sequence:RefSeq:WP_017209640.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB
COORDINATES: similar to AA sequence:RefSeq:WP_005216413.1
COORDINATES: similar to AA sequence:RefSeq:WP_002579226.1
COORDINATES: similar to AA sequence:RefSeq:WP_012450251.1
COORDINATES: similar to AA sequence:RefSeq:WP_002579669.1
COORDINATES: similar to AA sequence:RefSeq:WP_009169244.1
COORDINATES: protein motif:HMM:NF013100.2
GO:0008658 - penicillin binding [Evidence IEA]
penicillin-binding transpeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005212724.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
NAD/NADP octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_022744155.1
COORDINATES: similar to AA sequence:RefSeq:WP_006441242.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00350.1
GO:0070726 - cell wall assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010966112.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_010073481.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005353892.1
COORDINATES: protein motif:HMM:NF024875.2
4Fe-4S double cluster binding domain-containing protein
COORDINATES: protein motif:HMM:NF013117.2
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010966025.1
COORDINATES: similar to AA sequence:RefSeq:WP_007286982.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_010076221.1
COORDINATES: similar to AA sequence:RefSeq:WP_012200070.1
COORDINATES: protein motif:HMM:NF025640.2
COORDINATES: similar to AA sequence:RefSeq:WP_012425070.1
COORDINATES: similar to AA sequence:RefSeq:WP_002598528.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395696.1
COORDINATES: similar to AA sequence:RefSeq:WP_007059022.1
COORDINATES: similar to AA sequence:RefSeq:WP_010966683.1
COORDINATES: similar to AA sequence:RefSeq:WP_003427354.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF019013.2
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018184.2
COORDINATES: protein motif:HMM:NF024919.2
COORDINATES: similar to AA sequence:RefSeq:WP_018590127.1
COORDINATES: similar to AA sequence:RefSeq:WP_003471308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012449715.1
COORDINATES: protein motif:HMM:NF024258.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016293817.1
COORDINATES: protein motif:HMM:NF024741.2
COORDINATES: similar to AA sequence:RefSeq:WP_014355403.1
COORDINATES: similar to AA sequence:RefSeq:WP_003514744.1
COORDINATES: similar to AA sequence:RefSeq:WP_006859919.1
COORDINATES: similar to AA sequence:RefSeq:WP_012157994.1
COORDINATES: similar to AA sequence:RefSeq:WP_010964204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014356695.1
COORDINATES: similar to AA sequence:RefSeq:WP_013659011.1
COORDINATES: similar to AA sequence:RefSeq:WP_013659012.1
COORDINATES: similar to AA sequence:RefSeq:WP_019679615.1
COORDINATES: similar to AA sequence:RefSeq:WP_014355337.1
COORDINATES: protein motif:HMM:NF039324.1
COORDINATES: similar to AA sequence:RefSeq:WP_003413232.1
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015393161.1
GO:0009399 - nitrogen fixation [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_002581630.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_017212868.1
COORDINATES: similar to AA sequence:RefSeq:WP_003413251.1
COORDINATES: similar to AA sequence:RefSeq:WP_002581633.1
COORDINATES: similar to AA sequence:RefSeq:WP_002581634.1
COORDINATES: similar to AA sequence:RefSeq:WP_012058230.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003407629.1
COORDINATES: similar to AA sequence:RefSeq:WP_003431249.1
Fe-only nitrogenase accessory AnfO family protein
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: similar to AA sequence:RefSeq:WP_003407651.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002581640.1
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002581641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012200152.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF02683
NiCo riboswitches sense nickel or cobalt ions; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006779832.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018271.2
COORDINATES: protein motif:HMM:NF024988.2
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_011989075.1
COORDINATES: similar to AA sequence:RefSeq:WP_010074248.1
COORDINATES: similar to AA sequence:RefSeq:WP_016208961.1
COORDINATES: similar to AA sequence:RefSeq:WP_011986772.1
COORDINATES: similar to AA sequence:RefSeq:WP_012059738.1
COORDINATES: similar to AA sequence:RefSeq:WP_004457188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011639939.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: similar to AA sequence:RefSeq:WP_009171598.1
COORDINATES: protein motif:HMM:NF012754.2
COORDINATES: similar to AA sequence:RefSeq:WP_005211269.1
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_003432686.1
COORDINATES: similar to AA sequence:RefSeq:WP_013297370.1
COORDINATES: similar to AA sequence:RefSeq:WP_018595518.1
COORDINATES: similar to AA sequence:RefSeq:WP_009170768.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_011948527.1
COORDINATES: similar to AA sequence:RefSeq:WP_003428357.1
COORDINATES: similar to AA sequence:RefSeq:WP_013655480.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013624180.1
COORDINATES: similar to AA sequence:RefSeq:WP_013655478.1
COORDINATES: similar to AA sequence:RefSeq:WP_015561134.1
COORDINATES: similar to AA sequence:RefSeq:WP_012058231.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630388.1
COORDINATES: similar to AA sequence:RefSeq:WP_013655474.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006856597.1
COORDINATES: similar to AA sequence:RefSeq:WP_013655472.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_003452066.1
COORDINATES: similar to AA sequence:RefSeq:WP_010965770.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:NF024778.2
COORDINATES: similar to AA sequence:RefSeq:WP_006599538.1
GO:0008047 - enzyme activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006599539.1
2-hydroxyacyl-CoA dehydratase family protein
COORDINATES: protein motif:HMM:NF024585.2
COORDINATES: protein motif:HMM:NF017828.2
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010073603.1
COORDINATES: protein motif:HMM:NF017411.2
COORDINATES: similar to AA sequence:RefSeq:WP_010076340.1
COORDINATES: similar to AA sequence:RefSeq:WP_010073349.1
COORDINATES: similar to AA sequence:RefSeq:WP_010073350.1
COORDINATES: protein motif:HMM:NF013567.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012759.2
GO:0000036 - acyl carrier activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020130.2
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_016205649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008677570.1
COORDINATES: similar to AA sequence:RefSeq:WP_008677636.1
COORDINATES: similar to AA sequence:RefSeq:WP_016208936.1
GO:0005504 - fatty acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003373374.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015394404.1
COORDINATES: similar to AA sequence:RefSeq:WP_012343606.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_007046259.1
COORDINATES: similar to AA sequence:RefSeq:WP_008975001.1
GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009250992.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008716683.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013152.2
COORDINATES: protein motif:HMM:NF014679.2
COORDINATES: protein motif:HMM:NF024084.2
COORDINATES: similar to AA sequence:RefSeq:WP_016208588.1
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: similar to AA sequence:RefSeq:WP_008678680.1
COORDINATES: similar to AA sequence:RefSeq:WP_009169692.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008677126.1
COORDINATES: similar to AA sequence:RefSeq:WP_003415583.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003356961.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015391990.1
COORDINATES: protein motif:HMM:NF024739.2
COORDINATES: similar to AA sequence:RefSeq:WP_005812258.1
COORDINATES: similar to AA sequence:RefSeq:WP_007860991.1
COORDINATES: protein motif:HMM:NF012257.2
COORDINATES: similar to AA sequence:RefSeq:WP_002843976.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004608128.1
COORDINATES: similar to AA sequence:RefSeq:WP_003020883.1
COORDINATES: similar to AA sequence:RefSeq:WP_012424722.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0032778 - P-type cobalt transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012199413.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_002581761.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0000041 - transition metal ion transport [Evidence IEA]
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_002581762.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0006824 - cobalt ion transport [Evidence IEA]
energy-coupling factor ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003376209.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF033517.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003460274.1
COORDINATES: similar to AA sequence:RefSeq:WP_010963408.1
COORDINATES: protein motif:HMM:NF016526.2
GO:0008233 - peptidase activity [Evidence IEA]
GO:0009372 - quorum sensing [Evidence IEA]
accessory gene regulator B family protein
COORDINATES: protein motif:HMM:NF013954.2
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF020498.2
COORDINATES: protein motif:HMM:NF016432.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004620984.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006566726.1
COORDINATES: similar to AA sequence:RefSeq:WP_014254893.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_016438578.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF024295.2
COORDINATES: protein motif:HMM:NF012859.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_003477458.1
COORDINATES: similar to AA sequence:RefSeq:WP_003477455.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016207620.1
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: similar to AA sequence:RefSeq:WP_011948979.1
COORDINATES: similar to AA sequence:RefSeq:WP_010296565.1
COORDINATES: similar to AA sequence:RefSeq:WP_002597188.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002581219.1
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008676666.1
COORDINATES: similar to AA sequence:RefSeq:WP_008676665.1
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:NF013357.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010297402.1
COORDINATES: protein motif:HMM:NF023178.2
COORDINATES: protein motif:HMM:NF027589.2
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: similar to AA sequence:RefSeq:WP_016617916.1
COORDINATES: similar to AA sequence:RefSeq:WP_002597343.1
COORDINATES: similar to AA sequence:RefSeq:WP_015391950.1
COORDINATES: similar to AA sequence:RefSeq:WP_015391949.1
GO:0008810 - cellulase activity [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013156.2
GO:0030246 - carbohydrate binding [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015391947.1
dockerin type I domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017208851.1
COORDINATES: protein motif:HMM:NF025675.2
COORDINATES: protein motif:HMM:NF026220.2
COORDINATES: similar to AA sequence:RefSeq:WP_013239265.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012450914.1
COORDINATES: similar to AA sequence:RefSeq:WP_004036171.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013721027.1
COORDINATES: similar to AA sequence:RefSeq:WP_019279445.1
COORDINATES: protein motif:HMM:NF025865.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_015392533.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_003418630.1
bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_010237684.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010966558.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF024627.2
COORDINATES: similar to AA sequence:RefSeq:WP_015616796.1
COORDINATES: similar to AA sequence:RefSeq:WP_003360718.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_008423485.1
COORDINATES: protein motif:HMM:NF013421.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003411363.1