Sphingobium xenophagum strain C1 plasmid p5, complete sequence.
type: Entry
definition: Sphingobium xenophagum strain C1 plasmid p5, complete sequence.
sequence version: NZ_CP022751.1
sequence date: 2023-03-24
sequence: sequence
division: CON
label: NZ_CP022751.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07488776
keyword: RefSeq
source: Sphingobium xenophagum
organism: Sphingobium xenophagum
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP022751.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 175.7x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 15:35:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,548\nCDSs (total) :: 4,482\nGenes (coding) :: 4,326\nCDSs (with protein) :: 4,326\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 156\nCDSs (without protein) :: 156\nPseudo Genes (ambiguous residues) :: 0 of 156\nPseudo Genes (frameshifted) :: 98 of 156\nPseudo Genes (incomplete) :: 63 of 156\nPseudo Genes (internal stop) :: 4 of 156\nPseudo Genes (multiple problems) :: 9 of 156\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 62622
topology: circular
so has quality: SO_0000988
location: 1..62622
location: region:1-62622:1
RO_0002162: 121428

NZ_CP022751
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07488776
type: BioSample
SIO_000068: biosample

1
title: Whole Genome Sequence of Sphingobium hydrophobicum C1: Insights into Adaption to the Electronic-waste Contaminated Sediment
author: Song, D.
author: Chen, X.
author: Xu, M.
journal: Unpublished

2
title: Direct Submission
author: Song, D.
author: Chen, X.
author: Xu, M.
journal: Submitted (11-AUG-2017) Environmental Microbiology Research and Development Center, Guangdong Institute of Microbiology, Xianlie Middle Road, Guangzhou, Guangdong 510070, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62622:1
position: 62622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-62622:1:source
so part of: sequence
organism: Sphingobium xenophagum
mol type: genomic DNA
strain: C1
isolation source: electronic waste-contaminated sediment
culture collection: CCTCC:AB 2015198
culture collection: KCTC:42740
type material: type strain of Sphingobium hydrophobicum
plasmid: p5
country: China: Guiyu
collection date: 2014-03

121428
type: Taxonomy
SIO_000068: taxonomy

CJD35_RS22600
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22600
so part of: sequence
location: complement(join(62562..62622,1..947))
location: region:1-62622:-1
so has part: feature:1-947:-1:exon
so has part: feature:62562-62622:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62622:-1
position: 62622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-947:-1:exon

position:947:-1
position: 947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:62562-62622:-1:exon

position:62562:-1
position: 62562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CJD35_RS22600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22600
EC number: 2.4.-.-
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: glycosyltransferase family 4 protein
translation: MLLCAHISGHHLFGGERSLLDVLDALSTLPLNVVVTLPSGNNKAYLDEITKRCIGAYVLPYPQWLDNREPYGWLSHSFADIIARHGVDIVHANTIVLWEPLLAAQRMGRQTLIHSRELISLDEPLRDRIGLTISDIVTEVFKRADWIIGNSKATCALFSKGDRTLYVPNAVCLSEFDMSNKFGNIIKFGIVSSNIPKKGVADFVEVARRAATRVPRARFVVVGPHNPQIALWESEVKRGERPDNIAFLGYRETPRKAMSELNVLLNLSHFAESFGRTLAEGMAARRPVIAYDWGALHELVQHGESGFLVPYRDIDGRRRSGRHNVSGVRSHHSNG
SIO_010081: CJD35_RS22600
subclass of: SO_0000673
so part of: CJD35_RS22600
location: complement(join(62562..62622,1..947))
location: region:1-62622:-1
so has part: feature:1-947:-1:exon
so has part: feature:62562-62622:-1:exon

WP_167383185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-947:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:62562-62622:-1:exon

CJD35_RS22045
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22045
old locus tag: CJD35_22035
so part of: sequence
location: complement(982..1467)
location: region:982-1467:-1
so has part: feature:982-1467:-1:exon
subclass of: SO_0000010

position:982:-1
position: 982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1467:-1
position: 1467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:982-1467:-1:exon

CJD35_RS22045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22045
old locus tag: CJD35_22035
inference: COORDINATES: protein motif:HMM:NF025665.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 99-like domain-containing protein
translation: MHDLHKDFGGEIFDYTAVVDGDIEKYAGGYDWPVHRGAMLGWDNTARRLTDSRIFHGATPYGFRRWVKTILEQETRFNPGPESLMFINAWNEWAEGTYLEPDQRWGTSNLEAFASGVQAVPGIRTVRWPRARRCNPKSRPRLRGSDPVRPKRCCDLPACLA
SIO_010081: CJD35_RS22045
subclass of: SO_0000673
so part of: CJD35_RS22045
location: complement(982..1467)
location: region:982-1467:-1
so has part: feature:982-1467:-1:exon

WP_095687579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:982-1467:-1:exon

CJD35_RS23495
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23495
so part of: sequence
location: complement(1590..1832)
location: region:1590-1832:-1
so has part: feature:1590-1832:-1:exon
subclass of: SO_0000010

position:1590:-1
position: 1590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1832:-1
position: 1832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1590-1832:-1:exon

CJD35_RS23495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23495
inference: COORDINATES: protein motif:HMM:NF025665.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 99-like domain-containing protein
translation: MANENWSRNWDGQNRHVLMKQDYSLESNIALMRELIPMMKDRAGSVTTASPSCWSIASRSFPTGWKRRESGARNAGGGLG
SIO_010081: CJD35_RS23495
subclass of: SO_0000673
so part of: CJD35_RS23495
location: complement(1590..1832)
location: region:1590-1832:-1
so has part: feature:1590-1832:-1:exon

WP_167383180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1590-1832:-1:exon

CJD35_RS23500
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23500
so part of: sequence
location: complement(1822..2652)
location: region:1822-2652:-1
so has part: feature:1822-2652:-1:exon
subclass of: SO_0000010

position:1822:-1
position: 1822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2652:-1
position: 2652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1822-2652:-1:exon

CJD35_RS23500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23500
inference: COORDINATES: protein motif:HMM:NF025665.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 99-like domain-containing protein
translation: MRTAASNVFAPYDTLLWISPEESVEGENPNVAAKAAPFHADADWGCAAGAIEVLDPKAPCEARKSLLTALAPLCPARSRAFRHPLSFPVGSAIWLRPLLLRALGPSVRPFEMKAEGQGGFPGRATVLAMLAAIAREGAMATRLALPSAPPATLQATTPATVAERQVKAVAFYLPQFHPIAENDKWWGKGFTEWTNVVRGKQLFRNHYQPRVPADLGYYDLRLEDTQAAQADLARQFGIHGFCYYYYWFNGKNYSISRSSRWRDPPAPMRVFASVGQ
SIO_010081: CJD35_RS23500
subclass of: SO_0000673
so part of: CJD35_RS23500
location: complement(1822..2652)
location: region:1822-2652:-1
so has part: feature:1822-2652:-1:exon

WP_276327799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1822-2652:-1:exon

CJD35_RS22055
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22055
old locus tag: CJD35_22045
so part of: sequence
location: complement(2812..3156)
location: region:2812-3156:-1
so has part: feature:2812-3156:-1:exon
subclass of: SO_0000010

position:2812:-1
position: 2812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3156:-1
position: 3156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2812-3156:-1:exon

CJD35_RS22055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22055
old locus tag: CJD35_22045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHFARFGIAMKRSPGPNFDSRFYLARYPDVTAARMSALAHYLRHGRKEGRFPLPGMEQQDAAGTDVARTPDQISYPASAPPKRTGLAAWHRCLYATRAGTDGTTGRGNQRRRYV
SIO_010081: CJD35_RS22055
subclass of: SO_0000673
so part of: CJD35_RS22055
location: complement(2812..3156)
location: region:2812-3156:-1
so has part: feature:2812-3156:-1:exon

WP_095687580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2812-3156:-1:exon

CJD35_RS22060
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22060
old locus tag: CJD35_22050
so part of: sequence
location: complement(3328..3678)
location: region:3328-3678:-1
so has part: feature:3328-3678:-1:exon
subclass of: SO_0000010

position:3328:-1
position: 3328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3678:-1
position: 3678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3328-3678:-1:exon

CJD35_RS22060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22060
old locus tag: CJD35_22050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLTQSLAQREMRIDHLMHLTEEGRSLSERIDHAINAILIRPERRWISGKRQLARKAALLRESGMFDAQWYGLAHPDVTQAGEDPAIHYIQHGRAKVATLARSGPVHGDIAQGEPA
SIO_010081: CJD35_RS22060
subclass of: SO_0000673
so part of: CJD35_RS22060
location: complement(3328..3678)
location: region:3328-3678:-1
so has part: feature:3328-3678:-1:exon

WP_157742352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3328-3678:-1:exon

CJD35_RS22065
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22065
old locus tag: CJD35_22055
so part of: sequence
location: complement(3771..4412)
location: region:3771-4412:-1
so has part: feature:3771-4412:-1:exon
subclass of: SO_0000010

position:3771:-1
position: 3771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4412:-1
position: 4412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3771-4412:-1:exon

CJD35_RS22065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22065
old locus tag: CJD35_22055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQVKALTASLEANETELDKSKAARQTLQHSLSETQSALRQRQLETEETAAALAEIRQELKAAQTELDELRQMQIDDRAALEAARQTATVAQAAEAERYDEIADLTQVLIDREEMIAAQTAHIHSVESAFTSLNDAMKTMKQEAVQSTAAIARLRQDLIANEKALATIGTERQNLQHLLLETQGACINASEKPRKPPWRWQRPGRRWKPQMPN
SIO_010081: CJD35_RS22065
subclass of: SO_0000673
so part of: CJD35_RS22065
location: complement(3771..4412)
location: region:3771-4412:-1
so has part: feature:3771-4412:-1:exon

WP_157742353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3771-4412:-1:exon

CJD35_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22075
old locus tag: CJD35_22065
so part of: sequence
location: 4466..4711
location: region:4466-4711:1
so has part: feature:4466-4711:1:exon
subclass of: SO_0000010

position:4466:1
position: 4466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4711:1
position: 4711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4466-4711:1:exon

CJD35_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22075
old locus tag: CJD35_22065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLAILSSNFGYFPRQTGLSRVRCIQLSSQIGQFRSQILCLFESCRLLKLALSACMLQRIGQGLFLGGQSGDGITTLARFAA
SIO_010081: CJD35_RS22075
subclass of: SO_0000673
so part of: CJD35_RS22075
location: 4466..4711
location: region:4466-4711:1
so has part: feature:4466-4711:1:exon

WP_157742354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4466-4711:1:exon

CJD35_RS22610
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22610
so part of: sequence
location: complement(4876..5028)
location: region:4876-5028:-1
so has part: feature:4876-5028:-1:exon
subclass of: SO_0000010

position:4876:-1
position: 4876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5028:-1
position: 5028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4876-5028:-1:exon

CJD35_RS22610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLWQTRKNRASQAEAHKVAAEATDKELANLRGEAGKRGDAVTALTAEKRP
SIO_010081: CJD35_RS22610
subclass of: SO_0000673
so part of: CJD35_RS22610
location: complement(4876..5028)
location: region:4876-5028:-1
so has part: feature:4876-5028:-1:exon

WP_157742355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4876-5028:-1:exon

CJD35_RS22080
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22080
old locus tag: CJD35_22070
so part of: sequence
location: complement(5440..5892)
location: region:5440-5892:-1
so has part: feature:5440-5892:-1:exon
subclass of: SO_0000010

position:5440:-1
position: 5440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5892:-1
position: 5892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5440-5892:-1:exon

CJD35_RS22080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22080
old locus tag: CJD35_22070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPALRHHKAEPSAAFQTDQAFRTWLTEVNAIFERWSETGEDKADWPALDAMRATMDNLAMPLREVVTSLSQQAIDMSARDKELAYLRGEAGKRGDAVTALTAEKKTLTDALAAQKTAQVEEGEALRPRLEIARCSGKRARNRRQSGRSA
SIO_010081: CJD35_RS22080
subclass of: SO_0000673
so part of: CJD35_RS22080
location: complement(5440..5892)
location: region:5440-5892:-1
so has part: feature:5440-5892:-1:exon

WP_095687585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5440-5892:-1:exon

CJD35_RS22615
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22615
so part of: sequence
location: complement(6004..6150)
location: region:6004-6150:-1
so has part: feature:6004-6150:-1:exon
subclass of: SO_0000010

position:6004:-1
position: 6004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6150:-1
position: 6150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6004-6150:-1:exon

CJD35_RS22615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVITLRHPVEVAASLAKRDGMTGAEAALIWLRNMLEAEHGSRAWPGWW
SIO_010081: CJD35_RS22615
subclass of: SO_0000673
so part of: CJD35_RS22615
location: complement(6004..6150)
location: region:6004-6150:-1
so has part: feature:6004-6150:-1:exon

WP_157742356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6004-6150:-1:exon

CJD35_RS22085
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22085
old locus tag: CJD35_22075
so part of: sequence
location: complement(6141..6518)
location: region:6141-6518:-1
so has part: feature:6141-6518:-1:exon
subclass of: SO_0000010

position:6141:-1
position: 6141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6518:-1
position: 6518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6141-6518:-1:exon

CJD35_RS22085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22085
old locus tag: CJD35_22075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLAMHRTGSSAITRVLNLLGCDVAKTLMGPNEHNESGYWESDVLRIFNDKLLASAGSDWRDWQAFNPGWYQTPRLAEHLEQGLELLKSEFGASRFFVFKDPRITGSYHSGADFWRQPMPNPMWS
SIO_010081: CJD35_RS22085
subclass of: SO_0000673
so part of: CJD35_RS22085
location: complement(6141..6518)
location: region:6141-6518:-1
so has part: feature:6141-6518:-1:exon

WP_095687586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6141-6518:-1:exon

CJD35_RS22090
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22090
old locus tag: CJD35_22080
pseudo: true
so part of: sequence
location: 7054..8135
location: region:7054-8135:1
so has part: feature:7054-8135:1:exon
subclass of: SO_0000010

position:7054:1
position: 7054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8135:1
position: 8135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7054-8135:1:exon

CJD35_RS22090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22090
old locus tag: CJD35_22080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: CJD35_RS22090
subclass of: SO_0000673
so part of: CJD35_RS22090
location: 7054..8135
location: region:7054-8135:1
so has part: feature:7054-8135:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7054-8135:1:exon

CJD35_RS22095
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22095
old locus tag: CJD35_22085
so part of: sequence
location: complement(8645..9403)
location: region:8645-9403:-1
so has part: feature:8645-9403:-1:exon
subclass of: SO_0000010

position:8645:-1
position: 8645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9403:-1
position: 9403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8645-9403:-1:exon

CJD35_RS22095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22095
old locus tag: CJD35_22085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAMFLNERFGTVLDDVLWTECARAKLWPRHAPLMISNGDIDHIRPFLRFIAPHIIRQADIERESALAYYHAQGLGAGESAAVVDVGYGATIQRHLIRLLDQKIHGLYMITDKKGDALGAAANVIASGCFVQGAERNPSASPLFVHSFLLEKMLSADDEQVIRYNLSGQAEFRERGDYIDSSQKVRHELQQGAMAFLKDAVRFRDEMMEELIIDTEKCETLFSRFVSDISDAEKRIFSSLALDDYYCGRGIVE
SIO_010081: CJD35_RS22095
subclass of: SO_0000673
so part of: CJD35_RS22095
location: complement(8645..9403)
location: region:8645-9403:-1
so has part: feature:8645-9403:-1:exon

WP_157742357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8645-9403:-1:exon

CJD35_RS22620
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22620
so part of: sequence
location: 9413..9667
location: region:9413-9667:1
so has part: feature:9413-9667:1:exon
subclass of: SO_0000010

position:9413:1
position: 9413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9667:1
position: 9667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9413-9667:1:exon

CJD35_RS22620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22620
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIVGCGDVEYILDRPDAWHGDGAPGNEQVIAAHRLRATILPDIKRGLEEFPLSGQEIKLVEAVLLRLVQQPLRKSGGDGPRRL
SIO_010081: CJD35_RS22620
subclass of: SO_0000673
so part of: CJD35_RS22620
location: 9413..9667
location: region:9413-9667:1
so has part: feature:9413-9667:1:exon

WP_157742358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9413-9667:1:exon

CJD35_RS22100
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22100
old locus tag: CJD35_22090
so part of: sequence
location: complement(9810..10049)
location: region:9810-10049:-1
so has part: feature:9810-10049:-1:exon
subclass of: SO_0000010

position:9810:-1
position: 9810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10049:-1
position: 10049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9810-10049:-1:exon

CJD35_RS22100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22100
old locus tag: CJD35_22090
inference: COORDINATES: protein motif:HMM:TIGR01549.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
GO process: GO:0008152 - metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD-IA family hydrolase
translation: MLARCGIAGWDRFYLSSEVGLRKDSGKLYEHILAMEGVKPHQMVMIGDNERSDFQIPANMGIRTIHLLKPVNIMRAIPA
SIO_010081: CJD35_RS22100
subclass of: SO_0000673
so part of: CJD35_RS22100
location: complement(9810..10049)
location: region:9810-10049:-1
so has part: feature:9810-10049:-1:exon

WP_095687588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9810-10049:-1:exon

CJD35_RS23320
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23320
pseudo: true
so part of: sequence
location: complement(10043..11415)
location: region:10043-11415:-1
so has part: feature:10043-11415:-1:exon
subclass of: SO_0000010

position:10043:-1
position: 10043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11415:-1
position: 11415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10043-11415:-1:exon

CJD35_RS23320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23320
inference: COORDINATES: protein motif:HMM:NF016903.2
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: rhamnan synthesis F family protein
SIO_010081: CJD35_RS23320
subclass of: SO_0000673
so part of: CJD35_RS23320
location: complement(10043..11415)
location: region:10043-11415:-1
so has part: feature:10043-11415:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10043-11415:-1:exon

CJD35_RS22115
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22115
old locus tag: CJD35_22105
so part of: sequence
location: complement(11562..12260)
location: region:11562-12260:-1
so has part: feature:11562-12260:-1:exon
subclass of: SO_0000010

position:11562:-1
position: 11562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12260:-1
position: 12260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11562-12260:-1:exon

CJD35_RS22115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22115
old locus tag: CJD35_22105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSDERSIAHWRQKLADSEAKREALAQKLAQADRWVFDLADQCRVLTADKADLGKTLRLTQSRLDELRQSLDNRLDRLTRRYEEALSQLESEREDHNAIKDASTAKIAEMNDRIAASEQQMKERFREIVALTRVIQERDQILAEAHGRIEWMRRVISVLTRGFSTSGKARLLSWLPSRYSQKRHKYLLKEQGLFDPDAYTSIYPDVVDSKADPLRHYINHGLQEGRKISRDK
SIO_010081: CJD35_RS22115
subclass of: SO_0000673
so part of: CJD35_RS22115
location: complement(11562..12260)
location: region:11562-12260:-1
so has part: feature:11562-12260:-1:exon

WP_095687591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11562-12260:-1:exon

CJD35_RS22120
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22120
old locus tag: CJD35_22110
so part of: sequence
location: complement(12553..13302)
location: region:12553-13302:-1
so has part: feature:12553-13302:-1:exon
subclass of: SO_0000010

position:12553:-1
position: 12553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13302:-1
position: 13302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12553-13302:-1:exon

CJD35_RS22120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22120
old locus tag: CJD35_22110
inference: COORDINATES: protein motif:HMM:NF013530.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent epimerase/dehydratase family protein
translation: MHDHRRGLIATAGALALEELGSNVTVVTRAPPPLGGDSIEWTYGDVASQAAVHAVERAESVIYAAGTLGPATKLETVHSGISDEIVPVLKLAEQAAGSGCKTFVFISSGGTVYGPNVPLPTHEDVRTAPINIYGTIKVLTELALLEVGRKYGISIVILRVSNPYGPGQSGTRRMGFIAAAAKAAMAGEPIVIWGDGSTTRDFIFIDDVGRALALAAGYRGNSVILNIGSGEGHSLLQICKIVSSNSPAR
SIO_010081: CJD35_RS22120
subclass of: SO_0000673
so part of: CJD35_RS22120
location: complement(12553..13302)
location: region:12553-13302:-1
so has part: feature:12553-13302:-1:exon

WP_157742359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12553-13302:-1:exon

CJD35_RS23325
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23325
old locus tag: CJD35_22115
so part of: sequence
location: complement(13416..13805)
location: region:13416-13805:-1
so has part: feature:13416-13805:-1:exon
subclass of: SO_0000010

position:13416:-1
position: 13416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13805:-1
position: 13805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13416-13805:-1:exon

CJD35_RS23325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23325
old locus tag: CJD35_22115
inference: COORDINATES: protein motif:HMM:NF025072.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRREEGKFVVVWIGQQISEFDMAFGVWLHAQMERSRDSEGALSVHFEPSGPLYPVLMDAADIFLVTSRLDPLPNVALDAAVRDVPVIAFSGATGLADLADHGEMDLIEVEIGAIDEVVAAIKSRLGLKS
SIO_010081: CJD35_RS23325
subclass of: SO_0000673
so part of: CJD35_RS23325
location: complement(13416..13805)
location: region:13416-13805:-1
so has part: feature:13416-13805:-1:exon

WP_244917383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13416-13805:-1:exon

CJD35_RS23330
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23330
pseudo: true
so part of: sequence
location: complement(<14021..14473)
location: region:14021-14473:-1
so has part: feature:14021-14473:-1:exon
subclass of: SO_0000010

position:14021:-1
position: 14021
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:14473:-1
position: 14473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14021-14473:-1:exon

CJD35_RS23330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23330
inference: COORDINATES: protein motif:HMM:NF028304.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: CJD35_RS23330
subclass of: SO_0000673
so part of: CJD35_RS23330
location: complement(<14021..14473)
location: region:14021-14473:-1
so has part: feature:14021-14473:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14021-14473:-1:exon

CJD35_RS22135
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22135
old locus tag: CJD35_22125
so part of: sequence
location: complement(15151..16569)
location: region:15151-16569:-1
so has part: feature:15151-16569:-1:exon
subclass of: SO_0000010

position:15151:-1
position: 15151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16569:-1
position: 16569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15151-16569:-1:exon

CJD35_RS22135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22135
old locus tag: CJD35_22125
inference: COORDINATES: protein motif:HMM:NF016903.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rhamnan synthesis F family protein
translation: MASLKTDNIFKQALTMQTLSEQILQLEQSGTFDQAWYVQRYPDVAQCAMSPAEHFIRIGQHIGRKPNGTASGERSADEVRADVTSTAPQEAMQTHDGRRAAIARASRTDNQAIAQLALVSHPPVKTYGQYKSEILSRMDMLSDQPYFPVNVSIDTDYTGPPHATSFDSFISKRQRSEAVKQMTRMLKFGIVAINPQPGVHAARDEDGEFIRYRSIMADKEFIDRLPSWMIIHIHAFYPDVVEEMLSYFHGDSKKGRFFITTTTQKNYDAIAKILDNQGFSSYKILLIDNKGRDIGPFLDYAVDYASDGDVICHVHTKKSPDVGGSYGEKWRNQLYGALLTQTAVNAFEDRQLGLLFPDTSRSVGWGKNFPLCKQIAEYFGRQPSSHPGPMPVGNMFLARVEVARAMRDATHDFEWPREPVPYDGSILHAIERMWSMACEHAGFQWAAIHSPYGDNASTDAGARPAGARRAKG
SIO_010081: CJD35_RS22135
subclass of: SO_0000673
so part of: CJD35_RS22135
location: complement(15151..16569)
location: region:15151-16569:-1
so has part: feature:15151-16569:-1:exon

WP_095687595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15151-16569:-1:exon

CJD35_RS22140
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22140
old locus tag: CJD35_22130
so part of: sequence
location: complement(16538..17323)
location: region:16538-17323:-1
so has part: feature:16538-17323:-1:exon
subclass of: SO_0000010

position:16538:-1
position: 16538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17323:-1
position: 17323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16538-17323:-1:exon

CJD35_RS22140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22140
old locus tag: CJD35_22130
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDAEQREEQIRAFRDKLSELQSRLAQREEEAAQAWTSAEGHERERDMLAAEVEKVRRDLVDANGWVMRLALTRTEMERRITGLEGDLAKLSKDFGRVQQRNILLESRVASLSAQTARPALSDQTVAPPRSDSTDEEIRRLQDDLAQATNTLVSKELRINQHVKELVMLGNMLASEQDRLLEFEKQNAWLRETGKVILDYRRWWWRFIPSSWQRKRRDRHLLKKGLFDAEAYVNKYPDVITSGQDPLRHYFYHGVAENRQYF
SIO_010081: CJD35_RS22140
subclass of: SO_0000673
so part of: CJD35_RS22140
location: complement(16538..17323)
location: region:16538-17323:-1
so has part: feature:16538-17323:-1:exon

WP_157742361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16538-17323:-1:exon

CJD35_RS22145
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22145
old locus tag: CJD35_22135
so part of: sequence
location: complement(17338..18264)
location: region:17338-18264:-1
so has part: feature:17338-18264:-1:exon
subclass of: SO_0000010

position:17338:-1
position: 17338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18264:-1
position: 18264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17338-18264:-1:exon

CJD35_RS22145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22145
old locus tag: CJD35_22135
EC number: 2.1.-.-
inference: COORDINATES: protein motif:HMM:NF019846.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MHDTAYQIGGLIMDIYLPLSPAKILEIGAQNVNGSLRDHAPRNAEYVGLDFEAGDGVDIVVTGTGDWNVPDAHFDLVMASSVFEHDKAFWQTFVAMCRKAKPGGHIYVSAPSNGTVHRYPKDYWRFYPDSGMALEQWARSEGFDLTLVESFVAEREAEVWNDFCAVFRLGPSDADLNRDFVHDKVRSTNVLTWRSSRIINPKDDTEDMRLLGQAREETRKWVAHSEFLNATLSERETMWETERANLKAEEAQLRTAHSAEIEQRSNQIRELEQQIEQHRSSLADAAATAQELDVSRRRGKSWRQNWSG
SIO_010081: CJD35_RS22145
subclass of: SO_0000673
so part of: CJD35_RS22145
location: complement(17338..18264)
location: region:17338-18264:-1
so has part: feature:17338-18264:-1:exon

WP_157742362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17338-18264:-1:exon

CJD35_RS22150
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22150
old locus tag: CJD35_22140
so part of: sequence
location: 18719..19858
location: region:18719-19858:1
so has part: feature:18719-19858:1:exon
subclass of: SO_0000010

position:18719:1
position: 18719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19858:1
position: 19858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18719-19858:1:exon

CJD35_RS22150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22150
old locus tag: CJD35_22140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183632.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide biosynthesis/export family protein
translation: MHIKNFLYLILLAALAGCTTLPSSGPTGGQIQKSAKAPKSGSDPIRLVQVKTAADVPAGGASTAATALLPELTPPPTDLVGPGDVLDINIYEAGVTLFSGSGGTSDQLTTPGVQVQKLPPMRVDDLGNIAVPYAGTLHVAGVTVGEVEAMIRNALRRVSQNPQVLITMNQAITNSIIVGGEVGKPGRLVLQTNRETLSDVVALAGGYRGNARDLTLRINRGGRNVDVRMNDLTDNPALDVRAYPGDKFILINNPRTFSVLGASGRVEQVPFSRSKVSLAEAIATAGGVNPGIGNPAAIFVFRYVADAQGQEAPIVYHINMMQTGSYFLAQRFAMQDKDVLYFGNAAANQPSKLIQLISQLFSPILTVTSAVQTVQNSRN
SIO_010081: CJD35_RS22150
subclass of: SO_0000673
so part of: CJD35_RS22150
location: 18719..19858
location: region:18719-19858:1
so has part: feature:18719-19858:1:exon

WP_095687598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18719-19858:1:exon

CJD35_RS22155
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
gene: rfbC
locus tag: CJD35_RS22155
old locus tag: CJD35_22145
so part of: sequence
location: 19894..20457
location: region:19894-20457:1
so has part: feature:19894-20457:1:exon
subclass of: SO_0000010

position:19894:1
position: 19894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20457:1
position: 20457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19894-20457:1:exon

CJD35_RS22155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
gene: rfbC
locus tag: CJD35_RS22155
old locus tag: CJD35_22145
EC number: 5.1.3.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019054744.1
GO function: GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase
translation: MDIQTFDIAGVTLLTPRHIGDERGYFAEVFRADLFMQHVGDFGFVQDNESLSAKVGTIRGLHFQSNPHAQGKLVRCTAGALFDVAVDIRAGSPTYGQWVGETLTPDNGKQLWVPSGFAHGFCTLEPNTVIAYKVTDYYSAECDKGLAWDDPTIGITWPDVADASTLSPKDTRQPLLADLPAYFSWSN
SIO_010081: CJD35_RS22155
subclass of: SO_0000673
so part of: CJD35_RS22155
location: 19894..20457
location: region:19894-20457:1
so has part: feature:19894-20457:1:exon

WP_095687599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19894-20457:1:exon

CJD35_RS22160
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
gene: rfbB
locus tag: CJD35_RS22160
old locus tag: CJD35_22150
so part of: sequence
location: 20461..21516
location: region:20461-21516:1
so has part: feature:20461-21516:1:exon
subclass of: SO_0000010

position:20461:1
position: 20461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21516:1
position: 21516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20461-21516:1:exon

CJD35_RS22160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
gene: rfbB
locus tag: CJD35_RS22160
old locus tag: CJD35_22150
EC number: 4.2.1.46
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019054745.1
GO function: GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-glucose 4,6-dehydratase
translation: MRVIVTGGAGFIGSALVRYLVLQKGYDVLTIDALTYAGCEASLKEVEGKNSHQFLHANICDRAAMDAAITGFQPDRIMHLAAESHVDRSITGAADFIQTNVVGSFTLLEAARAYWNGLEGAAKDAFRFLHVSTDEVYGSLGDEGLFEETTPYDPSSPYSASKAASDHLAKAWHRTYGMPIVVSNCSNNYGPYHFPEKLIPLTILNALEGRKLPVYGKGENIRDWLYVDDHARALDIIVEKGEPGETYNVGGRNERKNIDVVKRICAVLDELRPTDKPRVDLIEYVTDRPGHDARYAIDATKLENELGWRAQENFDSGIEKTVRWYLDNEWWWRPLRDAYDGQRLGLEKAKA
SIO_010081: CJD35_RS22160
subclass of: SO_0000673
so part of: CJD35_RS22160
location: 20461..21516
location: region:20461-21516:1
so has part: feature:20461-21516:1:exon

WP_019054745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20461-21516:1:exon

CJD35_RS22165
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
gene: rfbD
locus tag: CJD35_RS22165
old locus tag: CJD35_22155
so part of: sequence
location: 21513..22403
location: region:21513-22403:1
so has part: feature:21513-22403:1:exon
subclass of: SO_0000010

position:21513:1
position: 21513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22403:1
position: 22403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21513-22403:1:exon

CJD35_RS22165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
gene: rfbD
locus tag: CJD35_RS22165
old locus tag: CJD35_22155
EC number: 1.1.1.133
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019054746.1
GO function: GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose reductase
translation: MRIAVTGTAGQVVTSLIERGTAQGHEVIAIGRPDLDLADPASIARALEAAKPDAIVSAAAYTAVDKAESESDLAHAVNGAGAGAVAQAAKALGVPLIHISTDYVFDGTLDRPYVESDPTGPTGVYGASKLAGEQAVLSTYPENSAVLRVAWVYSPFGGNFVKTMLRLAGDRDDLGVVGDQVGNPTSALAIADGIIQVATNMVADSYPEQRGVFHMTAQGEGSWADFAEAIFAASAARGGPSASVRHIGTADYPTPATRPANSRLDCARIAKVHGVTLPDWRVSLDEVMDRLQPATN
SIO_010081: CJD35_RS22165
subclass of: SO_0000673
so part of: CJD35_RS22165
location: 21513..22403
location: region:21513-22403:1
so has part: feature:21513-22403:1:exon

WP_095687600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21513-22403:1:exon

CJD35_RS22170
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
gene: rfbA
locus tag: CJD35_RS22170
old locus tag: CJD35_22160
so part of: sequence
location: 22426..23295
location: region:22426-23295:1
so has part: feature:22426-23295:1:exon
subclass of: SO_0000010

position:22426:1
position: 22426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23295:1
position: 23295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22426-23295:1:exon

CJD35_RS22170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
gene: rfbA
locus tag: CJD35_RS22170
old locus tag: CJD35_22160
EC number: 2.7.7.24
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006967582.1
GO function: GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-1-phosphate thymidylyltransferase RfbA
translation: MKGIILAGGSGTRLYPMTLSTSKQLMPVYDKPMIYYPLSTLMLAGIREVLIISTPRDLPAFQSLLGDGSAWGMTLEYAVQPSPDGLAQAYIIGADFVAGQQSALILGDNIYHGHGLPEILASASSRKEGASVFAYHVNDPERYGVVSFDANMKAETIEEKPESPKSNWAVTGLYFYDEQVVDIAANMKPSARGELEITDVNRVYLERGDLHVEIMGRGYAWLDTGTPDSLLDAAEFVRVLEKRQGFKIAAPEEIAYRQGFIDANGLEQAIGKLGKSDYGRYLRGILTES
SIO_010081: CJD35_RS22170
subclass of: SO_0000673
so part of: CJD35_RS22170
location: 22426..23295
location: region:22426-23295:1
so has part: feature:22426-23295:1:exon

WP_095687601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22426-23295:1:exon

CJD35_RS22175
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22175
old locus tag: CJD35_22165
pseudo: true
so part of: sequence
location: complement(23446..24935)
location: region:23446-24935:-1
so has part: feature:23446-24935:-1:exon
subclass of: SO_0000010

position:23446:-1
position: 23446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24935:-1
position: 24935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23446-24935:-1:exon

CJD35_RS22175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22175
old locus tag: CJD35_22165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183637.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: phosphomannomutase
SIO_010081: CJD35_RS22175
subclass of: SO_0000673
so part of: CJD35_RS22175
location: complement(23446..24935)
location: region:23446-24935:-1
so has part: feature:23446-24935:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23446-24935:-1:exon

CJD35_RS22180
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22180
old locus tag: CJD35_22170
so part of: sequence
location: complement(24970..25449)
location: region:24970-25449:-1
so has part: feature:24970-25449:-1:exon
subclass of: SO_0000010

position:24970:-1
position: 24970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25449:-1
position: 25449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24970-25449:-1:exon

CJD35_RS22180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22180
old locus tag: CJD35_22170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018719112.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RES domain-containing protein
translation: MKGGRTDRVLTAYRIGDPDGVHPIYDSEGARLYPGRWNTPLSSVIYTSEHYSTAMLEKLVHASSVLPPNQHYIRITIPNGTSYEIFQTAAHPGWDGKDEGLCKAFGQAWYEEQRSAILIVPSIPARVERNILINPQHPDATTITHDLPEPIWWDERLYG
SIO_010081: CJD35_RS22180
subclass of: SO_0000673
so part of: CJD35_RS22180
location: complement(24970..25449)
location: region:24970-25449:-1
so has part: feature:24970-25449:-1:exon

WP_167383184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24970-25449:-1:exon

CJD35_RS22185
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22185
old locus tag: CJD35_22175
so part of: sequence
location: complement(25446..25880)
location: region:25446-25880:-1
so has part: feature:25446-25880:-1:exon
subclass of: SO_0000010

position:25446:-1
position: 25446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25880:-1
position: 25880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25446-25880:-1:exon

CJD35_RS22185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22185
old locus tag: CJD35_22175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017502306.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2384 domain-containing protein
translation: MATQPHSIEALLGVRAGIHTSRLSLPTSIESGLPVAALDRLADKVAPGDARFKFRLIPKATLERRRKSASKRLTSEEGDRLARLAKVFSFALDIYREPERAREFLGRAHPMLDGKAPLDVALATSPGADLVINLLGRAAYGGGV
SIO_010081: CJD35_RS22185
subclass of: SO_0000673
so part of: CJD35_RS22185
location: complement(25446..25880)
location: region:25446-25880:-1
so has part: feature:25446-25880:-1:exon

WP_095687602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25446-25880:-1:exon

CJD35_RS22190
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22190
old locus tag: CJD35_22180
so part of: sequence
location: complement(26234..27190)
location: region:26234-27190:-1
so has part: feature:26234-27190:-1:exon
subclass of: SO_0000010

position:26234:-1
position: 26234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27190:-1
position: 27190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26234-27190:-1:exon

CJD35_RS22190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22190
old locus tag: CJD35_22180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183640.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MISSLILRSSLPLPPLIAQSEPRAQVRFLEFFAAAIRNPNTRRAYAKAAHDCLAWCLDHGVRDLSDIAPIHIAAWIETLGQGLAAPSVKQRLAAVRHLFDWLVTGQVIATNPAASVRGPAHSARQGKTPVLDAQEARALLDAIDVTTPVGLRDRALIGLMIYSFARVGAALAMKREDVFVQGRRLWLRLHEKGGKRHEMPCHHQLDDYLTAYIEGCGLGEGRGPLFRTIARGTGRLSDTPLSQAEAHAMVRRRAKAAGIATRIGNHSFRATGITTYLKNGGTLENAAAMANHSSTRTTQLYDRRRDEISLAEVERVRI
SIO_010081: CJD35_RS22190
subclass of: SO_0000673
so part of: CJD35_RS22190
location: complement(26234..27190)
location: region:26234-27190:-1
so has part: feature:26234-27190:-1:exon

WP_095687603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26234-27190:-1:exon

CJD35_RS22195
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22195
old locus tag: CJD35_22185
so part of: sequence
location: 27441..28091
location: region:27441-28091:1
so has part: feature:27441-28091:1:exon
subclass of: SO_0000010

position:27441:1
position: 27441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28091:1
position: 28091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27441-28091:1:exon

CJD35_RS22195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22195
old locus tag: CJD35_22185
EC number: 2.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010337543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MPDDRRLALAQSIGAETMGSFISQGDGHVAVLRHHGLTDGMAIYDLGCGCGRTAQALHRQGWQGQYAGADVVQELLDELSSRCPGYQTHLNVTPNIIAQDASLDMIFHWSVFTHLYPGESYLYMLDAFRALKPGGKMIFSFLELEEPAHDRVWEANLQLIRQGRPSPHLDAFLHRDWIRRFARNAGFLELHFTDGLDASHHPAFWQSLAILEKQAA
SIO_010081: CJD35_RS22195
subclass of: SO_0000673
so part of: CJD35_RS22195
location: 27441..28091
location: region:27441-28091:1
so has part: feature:27441-28091:1:exon

WP_095687604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27441-28091:1:exon

CJD35_RS22635
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22635
pseudo: true
so part of: sequence
location: 28530..>28688
location: region:28530-28688:1
so has part: feature:28530-28688:1:exon
subclass of: SO_0000010

position:28530:1
position: 28530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28688:1
position: 28688
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28530-28688:1:exon

CJD35_RS22635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5/IS1182 family transposase
SIO_010081: CJD35_RS22635
subclass of: SO_0000673
so part of: CJD35_RS22635
location: 28530..>28688
location: region:28530-28688:1
so has part: feature:28530-28688:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28530-28688:1:exon

CJD35_RS22205
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22205
old locus tag: CJD35_22195
so part of: sequence
location: 28825..29646
location: region:28825-29646:1
so has part: feature:28825-29646:1:exon
subclass of: SO_0000010

position:28825:1
position: 28825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29646:1
position: 29646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28825-29646:1:exon

CJD35_RS22205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22205
old locus tag: CJD35_22195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018076126.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MWTDTTRAQYARAGLTLPSDLTDAEWSVLEPFLPPPSHVGRPRKWPLRRIVEAILYLLRGGLPWRMLPPCFPPVSTVRRWFYLWRDNKLWLSLNHTLLLMAREATGREASPSAGVIDSQSVKTTESGGPRGFDAGKKIKGRKRHILTDTEGHLVHAVIHTADIQDRDGAPLVLREIIHRFPWLRHVFADGGYAGDKLREALRRTGKWTVEIVKRSDVAKGFVVLPRRWVVERTLAWLNRNRRLAKDFEQTIASATAWLFIASIQLFARRIARL
SIO_010081: CJD35_RS22205
subclass of: SO_0000673
so part of: CJD35_RS22205
location: 28825..29646
location: region:28825-29646:1
so has part: feature:28825-29646:1:exon

WP_043153120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28825-29646:1:exon

CJD35_RS22210
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22210
old locus tag: CJD35_22200
so part of: sequence
location: complement(29731..30270)
location: region:29731-30270:-1
so has part: feature:29731-30270:-1:exon
subclass of: SO_0000010

position:29731:-1
position: 29731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30270:-1
position: 30270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29731-30270:-1:exon

CJD35_RS22210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22210
old locus tag: CJD35_22200
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVAPDVGRKHRMKTAALGCITYLAIAGFVFGSLLKPVFLATIWSDRLGAPHWLWIVSACFAVGATSFLIPARFSIVRGPIFVAVALAGSLLSVGAYADNLRLKALNEFGADRQTQHSFLESVRHAPEEFQFFLHTAVMKHCVPYAWSYRTMNFYRIPLRAAVNVMPARWLTECSIHRE
SIO_010081: CJD35_RS22210
subclass of: SO_0000673
so part of: CJD35_RS22210
location: complement(29731..30270)
location: region:29731-30270:-1
so has part: feature:29731-30270:-1:exon

WP_053556452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29731-30270:-1:exon

CJD35_RS22215
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22215
old locus tag: CJD35_22205
so part of: sequence
location: complement(30267..30896)
location: region:30267-30896:-1
so has part: feature:30267-30896:-1:exon
subclass of: SO_0000010

position:30267:-1
position: 30267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30896:-1
position: 30896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30267-30896:-1:exon

CJD35_RS22215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22215
old locus tag: CJD35_22205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165277.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGQRAAIYARVSTADQSCERQLRDLAGFAERGGYEVVEVFRETASGMKANRSARAEVMKLAQARHIDAILVTELSRWGRSTQDLLDTLNRLSGWRVSVVAMSGMTFEVDTPHGRMMATMLAGIAQFERDMLSERVRSGLAAARARGRKLGRQTGVRPKSDRLAPKVLALVAEGRSYRWIARDLGLSKNTVAAIVGRSRADMDHKVEVAA
SIO_010081: CJD35_RS22215
subclass of: SO_0000673
so part of: CJD35_RS22215
location: complement(30267..30896)
location: region:30267-30896:-1
so has part: feature:30267-30896:-1:exon

WP_053556453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30267-30896:-1:exon

CJD35_RS22220
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22220
old locus tag: CJD35_22210
so part of: sequence
location: 30992..33889
location: region:30992-33889:1
so has part: feature:30992-33889:1:exon
subclass of: SO_0000010

position:30992:1
position: 30992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33889:1
position: 33889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30992-33889:1:exon

CJD35_RS22220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22220
old locus tag: CJD35_22210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020326821.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRHILSARQRSALLDLPTDEAALLRHYILAADDLIHIDRRRRPENRIGFALQLCALRYPGRTLAPGELIPHAVSAFLGAQLGIAGDTLASYAVRRQTRHQHMEALRRIYGYRMFPGQGPHARAFRDWLLAEAEQARSNDDLARRFIARCRETMTILPAITTIERLCADALVAAERQIEKRIAARLDPVACDGLDRLTTEMLPGAISRFIWLRRIEPGNNSAAANRLLDRLEFLRAMNLNDGLLAGVPPHRVARLRRQGERYFADGLRDLGADRRRAIMAVCVIEWATATADAVIETHDRIVGRTWRDAKQLHDARVVETRGATTATLNGFTALGQSLLEAHGDGASLEDAVARGAGWERLTSLVATAKTLTDTLGDDPLAYVDQGYHRFRRYAPRMLRCLDLKAAAVARPLLDAATAIATRGAVPAADDFLRPHSKWRRQLRAKGDDDARLREVAVMFHLRDALRSGDIWFDRSHRYGDLRHVLVPMAVAHAAKLAVPSDPHVWLADRKVRLADGLARLGRAARSGTIPKGSIEDGTLRIDRLTADAPDGIEDLMLDLYRRLPPVRITDLLLEVDTALGFTDAFTHLRTGVPCGDRIGLLNVLLAEGLNLGLRKMAEASNTHDYWQLSRLARWHVESEAIDQALANVVAAQGALPMAQVWGMGRAASADGQFFPAARQGEAMNTINARYGNDPGIKAYTHVNDRFAPFASRTIPATVSEAPYLLDGLTMNEAGRRIEEQYADTGGFTDHLFGISAMLGYRLVLRIRDLPSKRLYVFDPATTPSELRPLVGGKVREALIVSNWPDLFRCAATMSAGQVAPSSILRKLAAYPRQNDLAAALREVGRIERTLFIVEWILDAGMQRRAQVGLNKGEAHHALKNALRIGRQGEIRDRTTEGQHYRIAGLNLLTAIIVYWNTLHLGHAVEARRREGLDTPDHLLVHISPLGWAHILLTGEYLWPKDSAA
SIO_010081: CJD35_RS22220
subclass of: SO_0000673
so part of: CJD35_RS22220
location: 30992..33889
location: region:30992-33889:1
so has part: feature:30992-33889:1:exon

WP_095687606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30992-33889:1:exon

CJD35_RS22225
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22225
old locus tag: CJD35_22215
pseudo: true
so part of: sequence
location: <33922..34854
location: region:33922-34854:1
so has part: feature:33922-34854:1:exon
subclass of: SO_0000010

position:33922:1
position: 33922
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:34854:1
position: 34854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33922-34854:1:exon

CJD35_RS22225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22225
old locus tag: CJD35_22215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: CJD35_RS22225
subclass of: SO_0000673
so part of: CJD35_RS22225
location: <33922..34854
location: region:33922-34854:1
so has part: feature:33922-34854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33922-34854:1:exon

CJD35_RS22230
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22230
old locus tag: CJD35_22220
so part of: sequence
location: complement(35223..35996)
location: region:35223-35996:-1
so has part: feature:35223-35996:-1:exon
subclass of: SO_0000010

position:35223:-1
position: 35223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35996:-1
position: 35996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35223-35996:-1:exon

CJD35_RS22230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22230
old locus tag: CJD35_22220
EC number: 2.1.-.-
inference: COORDINATES: protein motif:HMM:NF024880.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MENMPDIYDMFPIYGEDDLFKDVNRHILPEDSMLEGIPGDYIMRTRYFSVGASAISVIRQVLQAQDRHISDVKRVLDYACGFGRVHRWLRVAFPRAVVRGVDADAPSVAGAKQLGFDAETLDLALNDDLGKFDLIWIGSLFTHLSYEESARTLKFLRRQLSPSGALIITTHGTDVVERINAGAPYGLETDGLKSLFETFKRTGWGYADYPDHDGYGISLSSPDVTMKLLSDCDMIPFFFRAKGWDKHQDVYACTPLD
SIO_010081: CJD35_RS22230
subclass of: SO_0000673
so part of: CJD35_RS22230
location: complement(35223..35996)
location: region:35223-35996:-1
so has part: feature:35223-35996:-1:exon

WP_095687607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35223-35996:-1:exon

CJD35_RS23335
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23335
so part of: sequence
location: complement(36188..37360)
location: region:36188-37360:-1
so has part: feature:36188-37360:-1:exon
subclass of: SO_0000010

position:36188:-1
position: 36188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37360:-1
position: 37360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36188-37360:-1:exon

CJD35_RS23335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23335
inference: COORDINATES: protein motif:HMM:NF015737.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: autotransporter outer membrane beta-barrel domain-containing protein
translation: MGSYSTIDKADTLFGFIVQRADRIQLLGRFLNDPLFNPQVSRSVDYANSVIPTQAANSPLFAALPSLLLANGGSNPAAFTRLTPEPYASATQLGVDQALTLADAARGPGFAFTDSDDVHAFTFGQVLGQWHRLAGDSDAGTSSARTRGYGLLGGVGIGNRDWAVGAFAGYLDSHQRIDALGASTKTDGFVAGVHGRYAAGGLRLTASVLYDGGDAQTDRALPNGSSASGRYGLHSWVGDLSVGYAFPTMGDWAVTPKVGVTYVRTVRDRVSETGSVFALDVARDRHVSGFADAGFRFARADASDAAFRPFVGLGLRAQIKGRTTEAIGGYAGGPLTLLATGAQRAAVVGTASAGLSYRLTSGVEFFTTIDAQSGEDDHRESASAGVRIRF
SIO_010081: CJD35_RS23335
subclass of: SO_0000673
so part of: CJD35_RS23335
location: complement(36188..37360)
location: region:36188-37360:-1
so has part: feature:36188-37360:-1:exon

WP_244917384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36188-37360:-1:exon

CJD35_RS23340
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23340
so part of: sequence
location: complement(41380..43257)
location: region:41380-43257:-1
so has part: feature:41380-43257:-1:exon
subclass of: SO_0000010

position:41380:-1
position: 41380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43257:-1
position: 43257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41380-43257:-1:exon

CJD35_RS23340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFQEKASRGRRVRVRALQTSAIFGAMLVAGPAYAQCSPDPTTAYGTTDCTGTDSDGLTVTTSGSRVVVAADAVVRPGSSAAAIINRATDTSFDIKGLVDGGTGKAGLFFTTGPAMSVPCDPYSGATPYYCVPGSTVTTYPSANTSVSVAEGSTVTGAQGILIRLDTGNSNGNIYATISNWGTISGTAGPAIVVDQTGIGTLSVYNYAPGFIGGMSGAVSYVSNSGTIDGGSNAAIASTNSYLNIDNSGTIRSSGSAPTISSDGSAYITNATGATIGGSSTAIRLSDSITLSNAGIVNGSVIVTTTGRQSSAIDTRTGTINGDLILGAGDDTLQARYDATSGRISSITGRIDGGAGTDTVEIGIDSDTTFRTIVLPTNFERFGLLLSNDAIATLAADFTPTTSIRYGGSGTLVNEAALVTVGPAIMAQFGAYGPIFDNRNSILATLSDDSSYAVSGSRIINSGTITANGGSGVSADSNLTNSGSITASGTGASVSYGNIDNSGIIRSTGGTGLTLGYSNTAVNSGSIDGATTGLSLSFGRLTNSGAISGGTTGVALGGTLINTGTGTITGGVSGGALGRCWPMPGRSSAQSTWPRPIPTIPALIFSSIMAAASRARSCWAGETTS
SIO_010081: CJD35_RS23340
subclass of: SO_0000673
so part of: CJD35_RS23340
location: complement(41380..43257)
location: region:41380-43257:-1
so has part: feature:41380-43257:-1:exon

WP_244917379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41380-43257:-1:exon

CJD35_RS22240
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22240
old locus tag: CJD35_22230
so part of: sequence
location: 43422..46304
location: region:43422-46304:1
so has part: feature:43422-46304:1:exon
subclass of: SO_0000010

position:43422:1
position: 43422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46304:1
position: 46304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43422-46304:1:exon

CJD35_RS22240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22240
old locus tag: CJD35_22230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661783.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MIGRWSLSFADIDFVNSKPALTRLGLAAQLKFFASLGFFAIDPGSIPTDGLSYLAEQLGVEAGEIAGYDFSSRTARRHCAEILIHLGYHRMKRVDRAQLTEWIAGELCPGGQSINAMLEHVFLWCRDRRIYGPSRKELERVVRSQRQDYLDTWLIGTSDRLSSDAVALLEASLADPDSSTGFNRMKGDAGQATLDNILDVTEKLAFIQRLDLPHDLLTATGKPWVDQIVRRVAGEKASEMRRHAPARQLGLYAIYLMSREAQLTDAMIDLLIETVHKIGTRSKRKVVGDIAKDIERVYGKERLLVEIASASINEPSGRICDVIFPIAGKAKLAAIVKESHAKGALDRRIYKVMRGSWANHYRRMLPSLLSVLEFRSNNAVWRPVLAALDWIRSKVDGGCRFVPLQDVPIDEVIPARWRSSVIDDDGRVNRISYELCVLTQLRDRIRSKEIWVVGADRYRNPDDDLPKDFEIRRDAYYSGLSLTPDAQAFCASIREELERELLLLNANIPQNDKVRLLWRGDNRISITPFKPLPEPKGLASIKSEIGQRWPMTGLLDVLKEAALDTGLMDAFETSASRVTLSKAALAQRLLLCLYGLGTNAGLKRVAGATPDVSYEELLHVHRRFIHAPALREACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVEKRATCVYSQLKRCSSSEVASMIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAVARQKLALPQAGMRTRLSNLLPILSSPIDWDEIEQQYDEMVKYAAAMQSRTADPEAILLRFARAEVMHPTYKALSELGRAVKTIFLCRYLRQEAFRREIHEGLNVVENWNGANGFVFFGKGGEIATNRIHEQEISVLALHLLQASLVYVNTRMLQTVLVEPKWAGRMTPEDYRGLTPLIYSHVNPYGRFDLDLNDRIDFGRLAA
SIO_010081: CJD35_RS22240
subclass of: SO_0000673
so part of: CJD35_RS22240
location: 43422..46304
location: region:43422-46304:1
so has part: feature:43422-46304:1:exon

WP_244917329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43422-46304:1:exon

CJD35_RS22245
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22245
old locus tag: CJD35_22235
so part of: sequence
location: 46447..47313
location: region:46447-47313:1
so has part: feature:46447-47313:1:exon
subclass of: SO_0000010

position:46447:1
position: 46447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47313:1
position: 47313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46447-47313:1:exon

CJD35_RS22245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22245
old locus tag: CJD35_22235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006953933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MARIGYARVSTTDQDLDIQIGRLKNAGCEIIRSETGSGASRSGRTELETIMQFMHTGDELVVLRLDRLGRSTRDVLNLVHELDEKGASLRILEPEVTTAGDMGRMVITILGMVADMELKFIKDRQRAGIEAARAEGVYKGRKKNVDDDEIRRRLAAGASKARVARDLKVSRMTVYRALDIIPSQTKLPEKPPTASIALHLIIENFNKRGRGRKPARERIEAMLERDYAMVKNGNCDYKLTVAYDPDPDGISLDEEIQSLLSEMFNIAESYNCSMEADIYEVGGQQRSW
SIO_010081: CJD35_RS22245
subclass of: SO_0000673
so part of: CJD35_RS22245
location: 46447..47313
location: region:46447-47313:1
so has part: feature:46447-47313:1:exon

WP_006953933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46447-47313:1:exon

CJD35_RS22250
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22250
old locus tag: CJD35_22240
so part of: sequence
location: complement(47460..48920)
location: region:47460-48920:-1
so has part: feature:47460-48920:-1:exon
subclass of: SO_0000010

position:47460:-1
position: 47460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48920:-1
position: 48920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47460-48920:-1:exon

CJD35_RS22250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22250
old locus tag: CJD35_22240
EC number: 2.7.7.13
EC number: 5.3.1.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183611.1
GO function: GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
translation: MATTSALSGPSITPVILAGGSGTRLWPLSRKSYPKQFVPLLGEGTLFQDAARRMSGSSGTVHFDKPMVLTNSLFRFIIAEQLAQEGIDPEAILIEPEGRNTAPAILAAALYLVQKQPDAIMLVAPSDHVITNKAAFHEAVGKGLVAIPQGQMVTFGIQPTRAETGYGYLEIGERPDGSGQPIALSSFVEKPNAARAEEMLATGNYLWNAGIFLFAVKDILAAFERHTPELFATVRQAVEQAEGDLGFLRLAEEPWGRADNVAIDYAIMERADNLSVVPYDAGWSDLGDWDAVWGHMQPDADGVALSGAATAIDCTNSLLRSETKGLEIVGLGLDNIVAVAMNDAVLIADKSRTQDVKKVVEALQRKGSTQAETFPKDHRPWGWFESLLVGGRFQVKRITVLPGQSLSLQSHFHRSEHWIVVEGTAKVTLDGAISLLTENQSIYIPVGAQHRIENPGRIPTVFIEVQTGPYVGEDDIVRHEDRYARG
SIO_010081: CJD35_RS22250
subclass of: SO_0000673
so part of: CJD35_RS22250
location: complement(47460..48920)
location: region:47460-48920:-1
so has part: feature:47460-48920:-1:exon

WP_095687608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47460-48920:-1:exon

CJD35_RS22255
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22255
old locus tag: CJD35_22245
so part of: sequence
location: 49188..50111
location: region:49188-50111:1
so has part: feature:49188-50111:1:exon
subclass of: SO_0000010

position:49188:1
position: 49188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50111:1
position: 50111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49188-50111:1:exon

CJD35_RS22255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22255
old locus tag: CJD35_22245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018251338.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MANLQRELFQLDSPLMGEIRGERSLMAFPFFALAKNAWMKPLTYATPTVTIEVRPSARGVATIYDKEIVLYIASLMAAKIEAGMEVSQDFTFTAHDLFTVTGANHSARTYARLSDALERLQGTQIRTNIEAGGEGEEGFFSWLSEARLQYARSGKGEKRLKAVRVRLCDWLFRAILRDGQVLDYAHTYFQLGPIERRIYEVARSSCVEGEPLEIDLDLLRHQIGFQNPLPNFRIAMRQIAGANIVPDYDIRLVEDAPAPPPPQGEERKAGRRAASARVIITQRPPALPNGSDWDGVGRSAQGASADS
SIO_010081: CJD35_RS22255
subclass of: SO_0000673
so part of: CJD35_RS22255
location: 49188..50111
location: region:49188-50111:1
so has part: feature:49188-50111:1:exon

WP_095687609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49188-50111:1:exon

CJD35_RS23345
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS23345
so part of: sequence
location: 50633..50941
location: region:50633-50941:1
so has part: feature:50633-50941:1:exon
subclass of: SO_0000010

position:50633:1
position: 50633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50941:1
position: 50941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50633-50941:1:exon

CJD35_RS23345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS23345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGTLAFGEALVGALGGHLTGSGKRAPRKRRSGAPHPTGAPVLRDSVEEGTFEHLFFTAPAKGRPTGCCAPRVGCSMPGASCGAKRGEAQGPRLAPSPLSSAR
SIO_010081: CJD35_RS23345
subclass of: SO_0000673
so part of: CJD35_RS23345
location: 50633..50941
location: region:50633-50941:1
so has part: feature:50633-50941:1:exon

WP_244917380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50633-50941:1:exon

CJD35_RS22260
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22260
old locus tag: CJD35_22250
so part of: sequence
location: 50830..51510
location: region:50830-51510:1
so has part: feature:50830-51510:1:exon
subclass of: SO_0000010

position:50830:1
position: 50830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51510:1
position: 51510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50830-51510:1:exon

CJD35_RS22260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22260
old locus tag: CJD35_22250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MLRAARRLLDAGRQLRREARGGAGAEARTLTPVERTLTTLTAASVRVLEEILTLARLNRGRVFPSYDYLADATSLGRATIARSLRILESVGFLVRQRRFKRVEGDGPGPRYAQTSNVYRAFLPDRLVRYLPRWMRPAPLPDDVVQREADRQEELAIMRTRLPERERHKAMEQGALAKILARLEAALDRQDIGTERESQNHPEPLTQSYIKRTSRVGLDGQQAKIRG
SIO_010081: CJD35_RS22260
subclass of: SO_0000673
so part of: CJD35_RS22260
location: 50830..51510
location: region:50830-51510:1
so has part: feature:50830-51510:1:exon

WP_244917381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50830-51510:1:exon

CJD35_RS22265
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22265
old locus tag: CJD35_22255
so part of: sequence
location: 51950..52219
location: region:51950-52219:1
so has part: feature:51950-52219:1:exon
subclass of: SO_0000010

position:51950:1
position: 51950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52219:1
position: 52219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51950-52219:1:exon

CJD35_RS22265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22265
old locus tag: CJD35_22255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183615.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVIEKAARALCRTQGQDDAALVDGNPAWRVYVPHVMTVLAAIHEPSQVMKEVGAEIVRHVREGESDYAHQSDAANVWRFMIDAMRRDS
SIO_010081: CJD35_RS22265
subclass of: SO_0000673
so part of: CJD35_RS22265
location: 51950..52219
location: region:51950-52219:1
so has part: feature:51950-52219:1:exon

WP_095687619.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51950-52219:1:exon

CJD35_RS22270
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22270
old locus tag: CJD35_22260
so part of: sequence
location: complement(52245..52592)
location: region:52245-52592:-1
so has part: feature:52245-52592:-1:exon
subclass of: SO_0000010

position:52245:-1
position: 52245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52592:-1
position: 52592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52245-52592:-1:exon

CJD35_RS22270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22270
old locus tag: CJD35_22260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: stability/partitioning determinant
translation: MSRANPFSDLDDFASDGAAKPVPADAIETIAKNAGFPSRKAGNAGAGETAETLVPSPAPTPGRAPRRHTTGRNRQINIKATEETIEELYRIADKMGVPLGAVLERALVALAKDIK
SIO_010081: CJD35_RS22270
subclass of: SO_0000673
so part of: CJD35_RS22270
location: complement(52245..52592)
location: region:52245-52592:-1
so has part: feature:52245-52592:-1:exon

WP_095687610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52245-52592:-1:exon

CJD35_RS22275
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22275
old locus tag: CJD35_22265
so part of: sequence
location: complement(52589..53287)
location: region:52589-53287:-1
so has part: feature:52589-53287:-1:exon
subclass of: SO_0000010

position:52589:-1
position: 52589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53287:-1
position: 53287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52589-53287:-1:exon

CJD35_RS22275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22275
old locus tag: CJD35_22265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPTIAFISPKGGVGKTTAALLLASQLARGAKVSVIDADPNHPIASWAKGTALPDNLSIVADVDEDNILDRIEEAAAQTPFVIVDLEGTAAKIVLLAVSQADLVVIPMQGSQLDAEQASRAIRVLKQHEKMTGREVPYGVLLSRTSPIIRTRTMGHIQGGLTDAGVPMFTTQLHEREAFRAIFSFRQTLETLDPKEVANLDKAIANAEQFAVEVIEQLRKSRGKGARQEDMTA
SIO_010081: CJD35_RS22275
subclass of: SO_0000673
so part of: CJD35_RS22275
location: complement(52589..53287)
location: region:52589-53287:-1
so has part: feature:52589-53287:-1:exon

WP_095687611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52589-53287:-1:exon

CJD35_RS22280
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22280
old locus tag: CJD35_22270
so part of: sequence
location: 54064..55701
location: region:54064-55701:1
so has part: feature:54064-55701:1:exon
subclass of: SO_0000010

position:54064:1
position: 54064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55701:1
position: 55701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54064-55701:1:exon

CJD35_RS22280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22280
old locus tag: CJD35_22270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015815.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MEARRSEEYGARVRHAGLALAVHADAFRAAPRAYLAACWWWLKRKRVRARAQFATLLGTSPRAYALWALRRTRAERRQTKEGDRAAEAGVPPIVALVDAGADESGLNTTLRSLAGEGIEALVIGRQGPADALIDWSAGCWAMPITAGDSVATGTASAYRRAVTEAGEDVRLIYADDDQIDRWGRFGTPHFKPDWNSELFRHFDYLTGACILRLGKDDLAAAKAGDWARQLVARVAGQGRPVHLREMLHHRCVRAAPIIPAPITTFAQDLPPVSVIVPTRNHVDLLRTCVEGVATTDYPDIELIIVDNDSDDPETLDYLNAVGGTMPGLRVKILRHAGAFNYSAINNRAAKVAHGRLLCLLNNDIEMTEPRWLATMVLQALRPDVGAVGARLLYPDGRVQHAGVVIGMGNAAGHAHRFLAPIEEGYFYRHALPQFTSAVTAACLLVQRERFFAVGGFNERDFAVAFNDVDLCLRLNQRGWQSFYEPRATLIHHESVSRGLDRDPVGAARFAGELAALQRLWRTDSVTDPFSHPELSRVTERFTIAM
SIO_010081: CJD35_RS22280
subclass of: SO_0000673
so part of: CJD35_RS22280
location: 54064..55701
location: region:54064-55701:1
so has part: feature:54064-55701:1:exon

WP_095687612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54064-55701:1:exon

CJD35_RS22285
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22285
old locus tag: CJD35_22275
so part of: sequence
location: 55704..56483
location: region:55704-56483:1
so has part: feature:55704-56483:1:exon
subclass of: SO_0000010

position:55704:1
position: 55704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56483:1
position: 56483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55704-56483:1:exon

CJD35_RS22285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22285
old locus tag: CJD35_22275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014076558.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5672 family protein
translation: MASTDPKSRLALNQVTLCAATSVNVAVTIRALEACLEQVDFAACKLFTHEKVTPDHPAIIVVPIAPLRSSTAYSDFMLRHMVDHIDTSHCLVAQWDGHVLDAARWQPEFLDYDYVGASWPQFDDGYDVGNGGFSLRSRRLMMACRELGFAPSHPEDIAIGRINRAWLEERGMRFAPRDIADRFAAERAGDIARSFGYHGVWHMPRTIGVEPFWRLYRKLDDRRTIQHDFTAIYRDIGQGRGGLARRMRLLFDQIGKCKS
SIO_010081: CJD35_RS22285
subclass of: SO_0000673
so part of: CJD35_RS22285
location: 55704..56483
location: region:55704-56483:1
so has part: feature:55704-56483:1:exon

WP_095687613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55704-56483:1:exon

CJD35_RS22290
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22290
old locus tag: CJD35_22280
so part of: sequence
location: 56480..57412
location: region:56480-57412:1
so has part: feature:56480-57412:1:exon
subclass of: SO_0000010

position:56480:1
position: 56480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57412:1
position: 57412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56480-57412:1:exon

CJD35_RS22290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22290
old locus tag: CJD35_22280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183620.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phytanoyl-CoA dioxygenase family protein
translation: MTNPFPGLPLLESPLFPKLCETQGWSEEEIRIARDLHAQGYAVLDFPDVEIDARIMRIQQNLGPCYGLDFANPASDKTIGERRVQDAWVFDEDVRAIAANQSIIDLLSKLYGRAAFPFQTLNFPVGTQQDAHSDSVHFSSLPERFMCGVWLAMEDVGPDAGPLFYYPGSHKWPIVTNALIGRRGFGSDLRSAQDPYGSAWRALCEAYGAQEEVFLAKKGQALIWCANLLHGGTRQNDPSLTRWSQVTHYYFDDCIYYTPAFSDEAVGKLALREIVAISDKAPRANSYLGETLKVDRTKPSFKQKIASYFR
SIO_010081: CJD35_RS22290
subclass of: SO_0000673
so part of: CJD35_RS22290
location: 56480..57412
location: region:56480-57412:1
so has part: feature:56480-57412:1:exon

WP_095687620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56480-57412:1:exon

CJD35_RS22640
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22640
so part of: sequence
location: complement(57426..58439)
location: region:57426-58439:-1
so has part: feature:57426-58439:-1:exon
subclass of: SO_0000010

position:57426:-1
position: 57426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58439:-1
position: 58439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57426-58439:-1:exon

CJD35_RS22640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPKSTVWKAGLILALPAILYAVMDDASPGNAAAAERNAAAHESLCSGQDKTSRAGGLVNIAPDGTGATTPLRDCIVFSGNRKAAQIGRTIEISDAAQGPSSSQGTSTADSGSYALSLVNIRPGWPKSALTGEADGMSIFVRQAKGDAAAMLANVGIRDGFAATLESHSFVANDQGQPVRGVRTQLGVVNPRDGGEYGLVLQASEGIGLSAGLRIASLNKANWKNYFELIDQDGNAALYVRADNGAMIGKDIAPTSDLKSRIGSPQSRYSDVYSQIVHLAPTNFADLPPCGSGEGAGSIAFVQDLRDKISAWGQMVKIGGGRYKSHVKCDGEKWMSF
SIO_010081: CJD35_RS22640
subclass of: SO_0000673
so part of: CJD35_RS22640
location: complement(57426..58439)
location: region:57426-58439:-1
so has part: feature:57426-58439:-1:exon

WP_157742363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57426-58439:-1:exon

CJD35_RS22300
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22300
old locus tag: CJD35_22290
so part of: sequence
location: 58556..59785
location: region:58556-59785:1
so has part: feature:58556-59785:1:exon
subclass of: SO_0000010

position:58556:1
position: 58556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59785:1
position: 59785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58556-59785:1:exon

CJD35_RS22300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22300
old locus tag: CJD35_22290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183631.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Wzz/FepE/Etk N-terminal domain-containing protein
translation: MWAGANLNKQAVCQSPDLQDLEIMHPSTDMPVEAADAPTNGFVRTLRRRRWFILFVIVPVILATIYYGFIASDVYQSESRFVIKAPSQKQAQTSTIANIIQSTGVSSGQDQAKEVMDYINSRDALTDLSKKIDVRSIFSNPDADIFSRYPGLFLDDSFEDMYKYYKKIVDVSVDHDSNLTVLRVKSITSKDAHDLNAGLLALSENLVNRLNGRSQSKAIAEAENRVQNAQIRLRNARLRLREYRNSSDVMDPTIEATGVLEISNKLVSEQAALRAQLATMQRITPENPTIPALQSRINAIGGQIAAQNSRAVGTGDGLASKLTQYENLQVEQEFSTQMLTMASATLEQARSEALKQQYYLETIVEPNKPDVPAYPKRLQNILVVAAGAFVLYLIGWMLIVGILEHSPED
SIO_010081: CJD35_RS22300
subclass of: SO_0000673
so part of: CJD35_RS22300
location: 58556..59785
location: region:58556-59785:1
so has part: feature:58556-59785:1:exon

WP_244917382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58556-59785:1:exon

CJD35_RS22305
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22305
old locus tag: CJD35_22295
so part of: sequence
location: 59792..60574
location: region:59792-60574:1
so has part: feature:59792-60574:1:exon
subclass of: SO_0000010

position:59792:1
position: 59792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60574:1
position: 60574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59792-60574:1:exon

CJD35_RS22305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22305
old locus tag: CJD35_22295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015820.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MDRILKGWQVQQRVIIALMIRELITRFGRENIGFLWIMAEPLLFAVLVGIGYTFMLGDTEHGVGVIAFIASGYIPLTVMRNSFGRAVNIFLVNGALLYHRQIRILDFIFVRFLIEMIGGMMAYLFVAIVLGFLGFFPIPAHFGYLIGGWFLYMMFVLAMTLVIAPLSEISEALEKLLPVTVYIAIPFSGTFNMASWLSPAARDVVLWSPFVHGMEMMRYGLFGDAVRPYYNIWVPLAGTAIVGMIGLMLCRHVRRTLVVE
SIO_010081: CJD35_RS22305
subclass of: SO_0000673
so part of: CJD35_RS22305
location: 59792..60574
location: region:59792-60574:1
so has part: feature:59792-60574:1:exon

WP_095687615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59792-60574:1:exon

CJD35_RS22310
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22310
old locus tag: CJD35_22300
so part of: sequence
location: 60571..61218
location: region:60571-61218:1
so has part: feature:60571-61218:1:exon
subclass of: SO_0000010

position:60571:1
position: 60571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61218:1
position: 61218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60571-61218:1:exon

CJD35_RS22310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22310
old locus tag: CJD35_22300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010515579.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MISCTNIKKSYRVGHRSKSVLKGVNLTIAPGDRIGLLGRNGAGKSTLIKLIGGVEMPTSGKIRRKMTCSWPLGFNGGFQGSLTGYDNARFIARIYGQDYVTMRRFVEEFTELGKQLNMPVKTYSSGQRARLAFALSLAIEFDCYLIDEVIMVGDKNFQDKCRYELFEKRQDRSILVVSHTTDIIRECCSRVSVIKDGLLSEYDDVDEGISVYDNL
SIO_010081: CJD35_RS22310
subclass of: SO_0000673
so part of: CJD35_RS22310
location: 60571..61218
location: region:60571-61218:1
so has part: feature:60571-61218:1:exon

WP_095687616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60571-61218:1:exon

CJD35_RS22040
type: Gene
subclass of: SO_0000704
RO_0002162: 121428
locus tag: CJD35_RS22040
old locus tag: CJD35_22030
so part of: sequence
location: complement(61568..62569)
location: region:61568-62569:-1
so has part: feature:61568-62569:-1:exon
subclass of: SO_0000010

position:61568:-1
position: 61568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62569:-1
position: 62569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61568-62569:-1:exon

CJD35_RS22040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 121428
locus tag: CJD35_RS22040
old locus tag: CJD35_22030
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF025025.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MGEAGRAFIATYFSQDSLRTALAQSYEQIFNQPMRGQSVLESPRSQPLVPTTVRLGHVPRTTVVIPVYNAPDEVRNCIASVIRHTDLARNQIVVIDDGSPDPAVTPILASFSQIPGVTIRRNAANMGYTKTINAAIVEAGSDDIVLLNSDTIVTPKWLEGLRAAAYSREKVATVTAMSDNAGAFSFPTFNKTCHKPDHLSHEEYALLMTQATQGCTPPEVPTGSGFCMFIRRALIDEQGLFDHEGFPRGYGEENDFCMRALKAGWLNLVSPWSFVYHVRTASFKGEKAALVKAGVDVVTKRYPDYAALVKQAFDGPEMTILRSAARCATKAPL
SIO_010081: CJD35_RS22040
subclass of: SO_0000673
so part of: CJD35_RS22040
location: complement(61568..62569)
location: region:61568-62569:-1
so has part: feature:61568-62569:-1:exon

WP_157742364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61568-62569:-1:exon