Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
The complete genome sequence of Streptomyces collinus Tu 365
Submitted (02-OCT-2012) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006260.1.\nGenome was manually curated based on annotation generated by the\nNCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.\nInformation about the Pipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.\n\nBacteria available from Dr. Tilmann Weber\n(tilmann.weber@biotech.uni-tuebingen.de).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.0.00.22\nGenome Coverage :: 61.35\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/12/2023 22:43:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,332\nCDSs (total) :: 7,231\nGenes (coding) :: 7,068\nCDSs (with protein) :: 7,068\nGenes (RNA) :: 101\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 3\nPseudo Genes (total) :: 175\nCDSs (without protein) :: 163\nPseudo Genes (ambiguous residues) :: 0 of 175\nPseudo Genes (frameshifted) :: 61 of 175\nPseudo Genes (incomplete) :: 142 of 175\nPseudo Genes (internal stop) :: 12 of 175\nPseudo Genes (multiple problems) :: 45 of 175\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019355162.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010636464.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR04474.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523445.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007387799.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013700.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005477094.1
COORDINATES: similar to AA sequence:RefSeq:WP_016189349.1
COORDINATES: similar to AA sequence:RefSeq:WP_009296756.1
COORDINATES: similar to AA sequence:RefSeq:WP_010038254.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523902.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014669555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677463.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677464.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979068.1
COORDINATES: similar to AA sequence:RefSeq:WP_007824777.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039391.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329437.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645464.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329443.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522974.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522973.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522972.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522971.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522970.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522969.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522968.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998315.1
FxSxx-COOH system tetratricopeptide repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_003954236.1
COORDINATES: similar to AA sequence:RefSeq:WP_037773189.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019886.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014677523.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677524.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677552.1
COORDINATES: similar to AA sequence:RefSeq:WP_016575823.1
COORDINATES: protein motif:HMM:NF012618.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_006380497.1
COORDINATES: similar to AA sequence:RefSeq:WP_013002959.1
COORDINATES: similar to AA sequence:RefSeq:WP_019059504.1
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014158416.1
COORDINATES: similar to AA sequence:RefSeq:WP_003978807.1
COORDINATES: similar to AA sequence:RefSeq:WP_018955431.1
COORDINATES: similar to AA sequence:RefSeq:WP_020390513.1
COORDINATES: similar to AA sequence:RefSeq:WP_020578447.1
COORDINATES: similar to AA sequence:RefSeq:WP_018851532.1
Clp protease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018837254.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521702.1
COORDINATES: similar to AA sequence:RefSeq:WP_019526985.1
COORDINATES: similar to AA sequence:RefSeq:WP_020124368.1
COORDINATES: similar to AA sequence:RefSeq:WP_019075790.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521854.1
COORDINATES: similar to AA sequence:RefSeq:WP_018533755.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677556.1
NucA/NucB deoxyribonuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014677555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014674333.1
COORDINATES: similar to AA sequence:RefSeq:WP_020135010.1
SOS-response transcriptional repressor, LexA
COORDINATES: similar to AA sequence:RefSeq:WP_018548858.1
COORDINATES: similar to AA sequence:RefSeq:WP_013731301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043711.1