Streptomyces collinus Tu 365 plasmid pSCO2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
The complete genome sequence of Streptomyces collinus Tu 365
Submitted (02-OCT-2012) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP006261.1.\nGenome was manually curated based on annotation generated by the\nNCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.\nInformation about the Pipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.\n\nBacteria available from Dr. Tilmann Weber\n(tilmann.weber@biotech.uni-tuebingen.de).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.0.00.22\nGenome Coverage :: 61.35\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/12/2023 22:43:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,332\nCDSs (total) :: 7,231\nGenes (coding) :: 7,068\nCDSs (with protein) :: 7,068\nGenes (RNA) :: 101\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 3\nPseudo Genes (total) :: 175\nCDSs (without protein) :: 163\nPseudo Genes (ambiguous residues) :: 0 of 175\nPseudo Genes (frameshifted) :: 61 of 175\nPseudo Genes (incomplete) :: 142 of 175\nPseudo Genes (internal stop) :: 12 of 175\nPseudo Genes (multiple problems) :: 45 of 175\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019074493.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023202.2
histone-like nucleoid-structuring protein Lsr2
COORDINATES: protein motif:HMM:NF018404.2