Legionella fallonii LLAP-10 plasmid II, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Submitted (26-SEP-2014) INSTITUT PASTEUR, Biology of Intracelullar Bacteria, 28, Rue du Docteur Roux, 75724 Paris Cedex 15, France
REFSEQ INFORMATION: The reference sequence is identical to\nLN614828.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:43:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,758\nCDSs (total) :: 3,697\nGenes (coding) :: 3,657\nCDSs (with protein) :: 3,657\nGenes (RNA) :: 61\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 12 of 40\nPseudo Genes (incomplete) :: 33 of 40\nPseudo Genes (internal stop) :: 4 of 40\nPseudo Genes (multiple problems) :: 8 of 40\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014845021.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845020.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655311.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845018.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655313.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019235278.1
COORDINATES: similar to AA sequence:RefSeq:WP_007970190.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF018508.2
COORDINATES: similar to AA sequence:RefSeq:WP_006871471.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871189.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871469.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444286.1
COORDINATES: similar to AA sequence:RefSeq:WP_013481268.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010946759.1
COORDINATES: similar to AA sequence:RefSeq:WP_011216045.1
COORDINATES: similar to AA sequence:RefSeq:WP_018576426.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015961478.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014843952.1
COORDINATES: similar to AA sequence:RefSeq:WP_015445061.1
COORDINATES: similar to AA sequence:RefSeq:WP_019350037.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871205.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235648.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019235647.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871201.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871200.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405631.1
COORDINATES: similar to AA sequence:RefSeq:WP_011946153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101336.1
COORDINATES: similar to AA sequence:RefSeq:WP_014843963.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235658.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010946788.1
COORDINATES: similar to AA sequence:RefSeq:WP_014843924.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235655.1
COORDINATES: similar to AA sequence:RefSeq:WP_011946148.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101364.1
COORDINATES: similar to AA sequence:RefSeq:WP_016356852.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013101363.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235274.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: similar to AA sequence:RefSeq:WP_019235272.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:NF019268.2
COORDINATES: similar to AA sequence:RefSeq:WP_010946831.1
COORDINATES: similar to AA sequence:RefSeq:WP_011947120.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006869520.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019235668.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006871174.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235661.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019350278.1
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: similar to AA sequence:RefSeq:WP_010948512.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655385.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011638907.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007642843.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301682.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012109924.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF013676.2
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_003633638.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_019350401.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019350400.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871699.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101349.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006871697.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235270.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101345.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871693.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011089764.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235670.1
GO:0003676 - nucleic acid binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011215167.1
COORDINATES: similar to AA sequence:RefSeq:WP_010948022.1
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF014631.2
COORDINATES: protein motif:HMM:NF022188.2
Rossmann-like and DUF2520 domain-containing protein
COORDINATES: protein motif:HMM:NF014638.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212473.1
COORDINATES: similar to AA sequence:RefSeq:WP_010947806.1
COORDINATES: similar to AA sequence:RefSeq:WP_010947805.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_010947804.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_010947803.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_015444240.1
COORDINATES: similar to AA sequence:RefSeq:WP_010947801.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_010947800.1
COORDINATES: protein motif:HMM:NF021213.2
COORDINATES: similar to AA sequence:RefSeq:WP_010947799.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_010303973.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_010947797.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_010947796.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_010947795.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010947794.1
COORDINATES: similar to AA sequence:RefSeq:WP_010947793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444244.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015444246.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:TIGR02686.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845132.1
COORDINATES: similar to AA sequence:RefSeq:WP_019218370.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845126.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845125.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845124.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011212521.1
COORDINATES: similar to AA sequence:RefSeq:WP_010947781.1
MazG nucleotide pyrophosphohydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014844323.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018286054.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611583.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019350398.1
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: similar to AA sequence:RefSeq:WP_006869930.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010946770.1
COORDINATES: similar to AA sequence:RefSeq:WP_011946135.1
COORDINATES: similar to AA sequence:RefSeq:WP_010652238.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655084.1
COORDINATES: similar to AA sequence:RefSeq:WP_020407225.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235273.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871704.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006871702.1
COORDINATES: similar to AA sequence:RefSeq:WP_003634294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961495.1
COORDINATES: similar to AA sequence:RefSeq:WP_014842615.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_010655442.1
COORDINATES: similar to AA sequence:RefSeq:WP_003097984.1
COORDINATES: similar to AA sequence:RefSeq:WP_013682673.1
COORDINATES: similar to AA sequence:RefSeq:WP_003606573.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655364.1
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006872215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212519.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655360.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655359.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212515.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212514.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655355.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212512.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655353.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655351.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655350.1
COORDINATES: similar to AA sequence:RefSeq:WP_004549375.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845129.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655348.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655347.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655346.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235319.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235318.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_009605979.1
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: similar to AA sequence:RefSeq:WP_020770989.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235317.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_004450411.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212492.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212488.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235307.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_013347313.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347310.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235302.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347308.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655325.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_010655324.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212474.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212472.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450445.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450448.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450452.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212465.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637164.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637165.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637166.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]