Mycobacterium kubicae strain NJH_MKUB1 plasmid pNJH02, complete sequence.
type: Entry
definition: Mycobacterium kubicae strain NJH_MKUB1 plasmid pNJH02, complete sequence.
sequence version: NZ_CP045083.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP045083.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12910285
keyword: RefSeq
source: Mycobacterium kubicae
organism: Mycobacterium kubicae
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP045083.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 313x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:04:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,156\nCDSs (total) :: 5,101\nGenes (coding) :: 4,992\nCDSs (with protein) :: 4,992\nGenes (RNA) :: 55\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 109\nCDSs (without protein) :: 109\nPseudo Genes (ambiguous residues) :: 0 of 109\nPseudo Genes (frameshifted) :: 48 of 109\nPseudo Genes (incomplete) :: 64 of 109\nPseudo Genes (internal stop) :: 12 of 109\nPseudo Genes (multiple problems) :: 14 of 109\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21117
topology: circular
so has quality: SO_0000988
location: 1..21117
location: region:1-21117:1
RO_0002162: 120959

NZ_CP045083
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12910285
type: BioSample
SIO_000068: biosample

1
title: Complete genomes of two Mycobacterium kubicae isolates
author: Hendrix, J.R.
author: Epperson, E.
author: Hasan, N.A.
author: Strong, M.
journal: Unpublished

2
title: Direct Submission
author: Hendrix, J.R.
author: Epperson, E.
journal: Submitted (03-OCT-2019) Center for Genes, Environment, and Health, National Jewish Health, 1400 Jackson Street, Denver, CO 80206, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21117:1
position: 21117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21117:1:source
so part of: sequence
organism: Mycobacterium kubicae
mol type: genomic DNA
strain: NJH_MKUB1
isolation source: Bronchial Alveolar lavage
host: Homo sapiens
plasmid: pNJH02
country: USA
lat lon: 39.74 N 104.94 W
collection date: 2016
collected by: National Jewish Health

120959
type: Taxonomy
SIO_000068: taxonomy

GAN17_RS25595
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
gene: mobF
locus tag: GAN17_RS25595
old locus tag: GAN17_25760
so part of: sequence
location: join(19466..21117,1..1180)
location: region:1-21117:1
so has part: feature:19466-21117:1:exon
so has part: feature:1-1180:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:19466-21117:1:exon

position:19466:1
position: 19466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1180:1:exon

position:1180:1
position: 1180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GAN17_RS25595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
gene: mobF
locus tag: GAN17_RS25595
old locus tag: GAN17_25760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013470225.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MLTIAKLSRWSVNYYNDTARAAGQAAKDAQRAGGGLGEYYGEHDTRTPTWLCAGDARAAAELVGLSDTERAGGDADPEVVARWLDEGAAPNGVCGRGFGKRSVHGFDLTFCAPKSVSLIRALRGDDVADKAVLSAHTTAIAEALEYLAAHAGYSRVHNSVTGDKDLVRLPGLVAVAYQHETSRAGDPHLHTHVLVPNRQARGDGRLVSVDGTSLYHEAKAAGVIYQATLRRELHRSLGLEWAPVDPQTGMAEIAGIDPKTITAWSQRSSALREWAADNLTVVDAAKGLSAAQLGAAQKATRPSKPEQLAWAQLAQDWRADARGLRFDRDAYTQARKARQAWSAAATAPLDRRRLLAAAEAMDKATFTRADLVEVIGAQLPVDTERGPREMVEAAVDALGLRVTAPRLAHQREGHDRFTLEAFLAEEQGVLDLVDARDVRAQIWVNEHDAAGLSPDQKRAVHSIAGSPWLVCPLSAPAGAGKTTSLRALAAGARRFRGQVMVVAPTGKAVDVAIREGAGDVGYTVAKALKSLRDGTLTLRRPGVVIVDEAAMIGTDDLRQLLAATTKAGIKAVLVGDAHQLSPVKARGGMFAQLCQDLPWTQTLSEVWRMRDPEERSASLALRDGGPAPIRRAVDWYRANGRLHTGDDIAMAADALTGYQADTAAGKDTLLICDTTEMCDALNRRIHDDTIDSALPTVGAARGHRIAKGDVILSRRNDPTNPVHDAADFAKAADPVRNGQRWRVYAVDSDHDRIAARRLSDGARVAFTGDYLQEHVTHGYAVTVHSAQGVTADTTHAVLGEHTSRNLLYVALTRGRESNEAYLYERRAGETEHEHAEEQPGVHLARRGTSRQAAHLARHIIGTRHDQAHTAHDVAAGAEGREQLPQRVQHLLDRRAHAVQRRRAAYWQSIQATVDERIEQQRFIDEHLSRNQDREQGQDYGLEL
SIO_010081: GAN17_RS25595
subclass of: SO_0000673
so part of: GAN17_RS25595
location: join(19466..21117,1..1180)
location: region:1-21117:1
so has part: feature:19466-21117:1:exon
so has part: feature:1-1180:1:exon

WP_186275192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19466-21117:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1180:1:exon

GAN17_RS25600
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25600
old locus tag: GAN17_25765
so part of: sequence
location: 1592..2788
location: region:1592-2788:1
so has part: feature:1592-2788:1:exon
subclass of: SO_0000010

position:1592:1
position: 1592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2788:1
position: 2788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1592-2788:1:exon

GAN17_RS25600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25600
old locus tag: GAN17_25765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007170186.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ig-like domain-containing protein
translation: MISVMAVAVVVIGRGDDHNGALLTASVPRAEMPATVTVTPGPDAVNVDPLGAVTVSAVNGTLSDVRMVNDQDKPIPGVMAPDHLVWKLGGPLGYGRSYTLTVVSRGQTGTFASQMSSFTTLTPSTQASVSLTTTSGAALRDGGTYGVGTVIVAHFDEPIIDRAAAQRRLTVTTAPAVEGSWYWVDDHNAHWRPEHYYAAGTKITAAANIYGAPLGSGLYGQEDKQTSFTIGDAHVSIADDNTKQVNVYNNGVLVRTMPTSMGMGGTKTVAGQTLTFWTPPGVYTVMDKSNPVVMDSSTYGLPVSSHLGYRETINYATRISPDGIYLHQLDSTVWAQGNTDTSHGCLNLNGDNAKWFFDFSRSGDIVDVRDTGGPPQSLQNNGDWSVPWTQWQAGSALA
SIO_010081: GAN17_RS25600
subclass of: SO_0000673
so part of: GAN17_RS25600
location: 1592..2788
location: region:1592-2788:1
so has part: feature:1592-2788:1:exon

WP_226057963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1592-2788:1:exon

GAN17_RS25605
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25605
old locus tag: GAN17_25770
so part of: sequence
location: 2844..3125
location: region:2844-3125:1
so has part: feature:2844-3125:1:exon
subclass of: SO_0000010

position:2844:1
position: 2844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3125:1
position: 3125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2844-3125:1:exon

GAN17_RS25605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25605
old locus tag: GAN17_25770
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAWLLADAAGPCLTGEQRTMVFVELGCGKNHLAIERILHVVVGKGFPLPTPLLAALTEWLNLYVGSPEERLLRDLTMQVRSLRPDFESGQCSD
SIO_010081: GAN17_RS25605
subclass of: SO_0000673
so part of: GAN17_RS25605
location: 2844..3125
location: region:2844-3125:1
so has part: feature:2844-3125:1:exon

WP_054585745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2844-3125:1:exon

GAN17_RS25610
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25610
old locus tag: GAN17_25775
so part of: sequence
location: 3239..3757
location: region:3239-3757:1
so has part: feature:3239-3757:1:exon
subclass of: SO_0000010

position:3239:1
position: 3239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3757:1
position: 3757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3239-3757:1:exon

GAN17_RS25610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25610
old locus tag: GAN17_25775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011896076.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVPGPPGQQGGDAPSVRQELVASFDHYLDAQRLVDQMSDDGFPVEHVRIIGDGVRTVEHVTGRMTTGKAALAGAGSGAWFGLLVGLLLSIFTAGPLWVWMLLVASIIGAFWGAAFGFIAHASTRGKRDFSSVQALEAQRYDVYVAAQYAAEAAARFVPGSRVDDSDAARTA
SIO_010081: GAN17_RS25610
subclass of: SO_0000673
so part of: GAN17_RS25610
location: 3239..3757
location: region:3239-3757:1
so has part: feature:3239-3757:1:exon

WP_051445806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3239-3757:1:exon

GAN17_RS25615
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25615
old locus tag: GAN17_25780
so part of: sequence
location: 3993..4568
location: region:3993-4568:1
so has part: feature:3993-4568:1:exon
subclass of: SO_0000010

position:3993:1
position: 3993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4568:1
position: 4568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3993-4568:1:exon

GAN17_RS25615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25615
old locus tag: GAN17_25780
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGQPAAAHPTDKPGDRTPAVALDRRRQWVAAAVRIVFGVIWGIDAWLKWQPGFRATFLPNMIATAAAEPHWLAPWFDFVLRLERPAPAMGAYLGAAVETVIAITLIVGVARRAVYVAGAIYSLLVWTTAGGFGAPYPPGATDIGPSIIYAVVFCALLVMLEHGLGNRFALDDTLVRRLPWWSRLAGPPLR
SIO_010081: GAN17_RS25615
subclass of: SO_0000673
so part of: GAN17_RS25615
location: 3993..4568
location: region:3993-4568:1
so has part: feature:3993-4568:1:exon

WP_139315447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3993-4568:1:exon

GAN17_RS25620
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25620
old locus tag: GAN17_25785
so part of: sequence
location: complement(5153..8011)
location: region:5153-8011:-1
so has part: feature:5153-8011:-1:exon
subclass of: SO_0000010

position:5153:-1
position: 5153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8011:-1
position: 8011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5153-8011:-1:exon

GAN17_RS25620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25620
old locus tag: GAN17_25785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007769392.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RND family transporter
translation: MTAGNQTRPRLARFVRRFAVPIILAWLLVTVAVNVFWPPIESAARNHAVTMSPQDAPSMIASKQIGATFHEFDSDSVAMVVLESDTKLGEHAHRYYDGLVHELQGDHKHVQHVQNVWGSPLTAAGVQSRDGKAAYAQLNLAGNQGSTLGNESIKAVRVVLARTPPPAGMRVYLTGPAALTTDMNEAADKSMLTMMGVTGVVIMIMLFLTYRSVSTVLLVLAMVGLEMGTARGVVAILGNYDLLGFSTFVVAMLSSLAIAAGTDYAIFLIGRYQEARQAGEDAETAYYSMFRGTSHIILGSGLTIAGATLCLHLARLAYFRALGIPSALGLLIVVAGALTAAPAIVAVASRFGLLDPKRTVKVRGWRRIATATVRWPAPVLAASLALALVGIAIMPSMKTSYDDRNYIPADLPSNVGYTAAEHHFSTATMNPDILMVKSDHDMRNAGDMIILDRIAKEVFRTPGIAMVQSITRPLGGPVDHTSIPFQISAQSIPIRENLQFMNDRAADMLTMSNDLGAMIGSMQRMYGLVQQMSGATHHMLGDMNNMKATLDDIRDHLADFDDVARPVRSYLYWEPHCLNIPVCWATKSVFESIDGVDKFSENMKTLLGDVSNVDTLIPQMAQQFPPIIAVATAMQASLQTMHSSFAGLVDQITRMTDTASAMGQAFDASKSGDYFYLPPEAFDNPDFQQGLKLFLSPDGHAARFIITHDTDPATPAGIAAVTPELQAAHQAVKGSSLTDARFYLAGTAAVYRDIQAGSKYDLMIVGLAALTLIFAVMLIITRAAIASIAIVGTVLLSLGAAFGLSVLVWQHILGLELNWIAPVFGLIILLAVGSDYNLLLVSRFQEEIGAGLKTGIIRSMGSTGGVVTAAGLVFAFTMMSMAASDLSSIGQAGTTIGLGLLFDTLIVRSLMTPSIAALLGRWFWWPQQTAPRPTSQALHHARNGISTSGGSR
SIO_010081: GAN17_RS25620
subclass of: SO_0000673
so part of: GAN17_RS25620
location: complement(5153..8011)
location: region:5153-8011:-1
so has part: feature:5153-8011:-1:exon

WP_054586225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5153-8011:-1:exon

GAN17_RS25625
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25625
old locus tag: GAN17_25790
so part of: sequence
location: complement(8008..8439)
location: region:8008-8439:-1
so has part: feature:8008-8439:-1:exon
subclass of: SO_0000010

position:8008:-1
position: 8008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8439:-1
position: 8439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8008-8439:-1:exon

GAN17_RS25625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25625
old locus tag: GAN17_25790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015355689.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MmpS family transport accessory protein
translation: MLATLKRAWVPIVVVLVVLLGSIGVFKLRGVFGSDPIFSATAGQAQQLPQINVKHVTYEVFGATGTAGRVSYVDVDSRPAQANFSSLPWRYTIATTMSSVIANVVAQGDSDNLGCRITVNGEVKDEHHSSEHHAQVSCLVKAA
SIO_010081: GAN17_RS25625
subclass of: SO_0000673
so part of: GAN17_RS25625
location: complement(8008..8439)
location: region:8008-8439:-1
so has part: feature:8008-8439:-1:exon

WP_042910275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8008-8439:-1:exon

GAN17_RS25630
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25630
old locus tag: GAN17_25795
so part of: sequence
location: complement(8611..8928)
location: region:8611-8928:-1
so has part: feature:8611-8928:-1:exon
subclass of: SO_0000010

position:8611:-1
position: 8611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8928:-1
position: 8928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8611-8928:-1:exon

GAN17_RS25630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25630
old locus tag: GAN17_25795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003879054.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-sensitive transcriptional regulator
translation: MVKTAGKASLAQPRSAHASQDIEATLNRLRRAHGQLGAVISMIEQGRSCKDVVTQLAAVSRALDRAGFKIIASGLRHCLDAPGDHADGPAPLTIEELEKLFLSLA
SIO_010081: GAN17_RS25630
subclass of: SO_0000673
so part of: GAN17_RS25630
location: complement(8611..8928)
location: region:8611-8928:-1
so has part: feature:8611-8928:-1:exon

WP_051445812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8611-8928:-1:exon

GAN17_RS25635
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25635
old locus tag: GAN17_25800
so part of: sequence
location: 9122..9739
location: region:9122-9739:1
so has part: feature:9122-9739:1:exon
subclass of: SO_0000010

position:9122:1
position: 9122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9739:1
position: 9739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9122-9739:1:exon

GAN17_RS25635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25635
old locus tag: GAN17_25800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007769389.1
GO function: GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsbA family protein
translation: MTDRQPPVTASETLTLWLDPVCPFSWNTARWLSTAADEAGFNIEWRLMSLAILNAGRELPEQQQARMRDSRQVGRLMVALRDELGADAIAKAYFAFGHRYFDESAALDDDLVKHVLAAAGAHHVTAAALSDASLDAAVDDSHQASQDALGEASGSPLITIDGHTVFGPVLTSVPAADKTSAIFEAVATLVGTSEFTQLERPRTHA
SIO_010081: GAN17_RS25635
subclass of: SO_0000673
so part of: GAN17_RS25635
location: 9122..9739
location: region:9122-9739:1
so has part: feature:9122-9739:1:exon

WP_051445808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9122-9739:1:exon

GAN17_RS25640
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25640
old locus tag: GAN17_25805
so part of: sequence
location: 9941..11122
location: region:9941-11122:1
so has part: feature:9941-11122:1:exon
subclass of: SO_0000010

position:9941:1
position: 9941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11122:1
position: 11122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9941-11122:1:exon

GAN17_RS25640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25640
old locus tag: GAN17_25805
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016893159.1
GO function: GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD/NAD(P)-binding oxidoreductase
translation: MTKKLVVLGAGIGGLTVIKELTESGVSLDDLDITVVDEDFSHFLGFTLPWVMRGWRNADSVPIRPSDSTLAGVRRVTGTVRAIDPATRSVTLADGSDIAFDALIIATGARNAIDNVPGLRDATQRGVAVHYYSTDAAAHAHEALQTFSGGKLVFLVTSQPYRCPVAPYEGAMLAADLLRDKGSREHANISVYSPEKQPMPSAGPFAGPELVALLNANDIEFFGEHAVADIDADARQIHFHNGANADFDLLVFIPPHEPAVTLDGPGWIEVDATTMQTQHPGVFAIGDTTVTTSPSGRSLPKAAIFAKNGAKAAALNALHYLGITDTDTALSGEGYCYLDTGGGASALGKGNFFALPHPAIHLSPPSEQLHHDKQDEERDWRAIWEHQPSKPGD
SIO_010081: GAN17_RS25640
subclass of: SO_0000673
so part of: GAN17_RS25640
location: 9941..11122
location: region:9941-11122:1
so has part: feature:9941-11122:1:exon

WP_042910276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9941-11122:1:exon

GAN17_RS25645
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25645
old locus tag: GAN17_25810
so part of: sequence
location: 11340..11912
location: region:11340-11912:1
so has part: feature:11340-11912:1:exon
subclass of: SO_0000010

position:11340:1
position: 11340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11912:1
position: 11912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11340-11912:1:exon

GAN17_RS25645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25645
old locus tag: GAN17_25810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011896331.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTSILGYARVSTTGQDLDGQLTALAAVGVDADRVFTDKLSGSAKTARPGLASMLDYARAGDTVVVTAIDRLGRSVAEVTRTIAELGERRILLRALREGIDTATSTGRAVAAIMATLAELELELGRERRAASRESRRARDLPATKPPKLSAERQQQLCRLAATGEPVAQLATAFGIGRATAYRYLGAAVQG
SIO_010081: GAN17_RS25645
subclass of: SO_0000673
so part of: GAN17_RS25645
location: 11340..11912
location: region:11340-11912:1
so has part: feature:11340-11912:1:exon

WP_042910277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11340-11912:1:exon

GAN17_RS25650
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25650
old locus tag: GAN17_25815
so part of: sequence
location: 11921..12481
location: region:11921-12481:1
so has part: feature:11921-12481:1:exon
subclass of: SO_0000010

position:11921:1
position: 11921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12481:1
position: 12481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11921-12481:1:exon

GAN17_RS25650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25650
old locus tag: GAN17_25815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012296900.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAWLDESGSNQAMDPGTYILSAAICEETHAEAVREAMRGLLVSKRHRKLHWRDEDRGRQATIAKTIAELRVEHLVVVRSEATTTGRPERQRRLCMERMLAELVKMGVRQAILESRGRKDDQRDHQTLDYLRRKRILDGGLHMDHVGGPAEPMLWIADACCGAVTQMRCGDRHCYALIESKVTLVDV
SIO_010081: GAN17_RS25650
subclass of: SO_0000673
so part of: GAN17_RS25650
location: 11921..12481
location: region:11921-12481:1
so has part: feature:11921-12481:1:exon

WP_083651534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11921-12481:1:exon

GAN17_RS25655
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25655
old locus tag: GAN17_25820
so part of: sequence
location: 12721..13716
location: region:12721-13716:1
so has part: feature:12721-13716:1:exon
subclass of: SO_0000010

position:12721:1
position: 12721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13716:1
position: 13716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12721-13716:1:exon

GAN17_RS25655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25655
old locus tag: GAN17_25820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014805724.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ERCC4 domain-containing protein
translation: MAELLIAVNPDDESRLRLLLRVPLAGGDLLFRTSGTWPREKALFAYPVPLEEWPEDPVIVERVPLRSCHRRGAAIDVIADRSRHNRSQLVFTQARGRDAVFWQSPRTRKQARPNVRTPTARAHGIEELAIVIDSHEQYAYRFPTQQVTTVKRALPCGDYGIVIDGQLVASVERKSLADLVASLTGGKLRYQVGELAALPRAAVVIEDRYSQLFKLDRVRPALIADGLAELQIRWPNVPVVFCETRQLAQEWTYRFLAAAHTWAVTEHAALQRISPATIDATELDQASVAPTPSTAEVRAWARSAGLPVPDRGRLRPEIWAAWHDANSPNRT
SIO_010081: GAN17_RS25655
subclass of: SO_0000673
so part of: GAN17_RS25655
location: 12721..13716
location: region:12721-13716:1
so has part: feature:12721-13716:1:exon

WP_042910278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12721-13716:1:exon

GAN17_RS25660
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25660
so part of: sequence
location: complement(13939..14097)
location: region:13939-14097:-1
so has part: feature:13939-14097:-1:exon
subclass of: SO_0000010

position:13939:-1
position: 13939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14097:-1
position: 14097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13939-14097:-1:exon

GAN17_RS25660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25660
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRRRQDDRDQGDDEGRPVLRWLRLARDTASGLVLMYELVDHLYTVAGWLVG
SIO_010081: GAN17_RS25660
subclass of: SO_0000673
so part of: GAN17_RS25660
location: complement(13939..14097)
location: region:13939-14097:-1
so has part: feature:13939-14097:-1:exon

WP_154074437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13939-14097:-1:exon

GAN17_RS25665
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25665
old locus tag: GAN17_25825
so part of: sequence
location: 14309..15010
location: region:14309-15010:1
so has part: feature:14309-15010:1:exon
subclass of: SO_0000010

position:14309:1
position: 14309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15010:1
position: 15010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14309-15010:1:exon

GAN17_RS25665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25665
old locus tag: GAN17_25825
inference: COORDINATES: protein motif:HMM:NF013793.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MQVVAVLSEKGGVGKTTTCMSLAGVTAEASRTLVVDVDPQASASWWSANINDEHRPFDFATATDVTQLGGLRDKAEAEGYDVVFVDTPGSLEGRAILKTVLASSDYAVIPTEPAPLSVEPLIRTVRTLIAPSGVPYRVLCNKIDGRAAGMRDDAFRMLDEQGIHRFRASTRLLSAHAYAPAQGLVVTQYPRDRYSIEAASEYRAVALEMFADWRTPIGRHTQLAVSARNPGGQ
SIO_010081: GAN17_RS25665
subclass of: SO_0000673
so part of: GAN17_RS25665
location: 14309..15010
location: region:14309-15010:1
so has part: feature:14309-15010:1:exon

WP_054585403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14309-15010:1:exon

GAN17_RS25670
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25670
old locus tag: GAN17_25835
so part of: sequence
location: 15754..16500
location: region:15754-16500:1
so has part: feature:15754-16500:1:exon
subclass of: SO_0000010

position:15754:1
position: 15754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16500:1
position: 16500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15754-16500:1:exon

GAN17_RS25670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25670
old locus tag: GAN17_25835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005088169.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NYN domain-containing protein
translation: MRVGVYIDGFNLYYGGKFLCGPSTPGWRWLDLRQLATDLITNHSPWTNVTVERIVYCTARISGVDNPVGQHEQDAYLAALTRGNIVDHIEYGNYVTRTARAPLATPNRRGRPILTAPGGPVMIKNDAGQDEPRARFIVSVARREEKGSDVNVAAHLLLDVLKGQPGHKPIEGAVVISNDTDLKFPIDQVRQLVPLGLVNPTRGYTATSLSAPATTGAGNHWWYQMADADFRACQLADPTGGVHKPLPW
SIO_010081: GAN17_RS25670
subclass of: SO_0000673
so part of: GAN17_RS25670
location: 15754..16500
location: region:15754-16500:1
so has part: feature:15754-16500:1:exon

WP_042910280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15754-16500:1:exon

GAN17_RS25675
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25675
old locus tag: GAN17_25840
so part of: sequence
location: 16873..17181
location: region:16873-17181:1
so has part: feature:16873-17181:1:exon
subclass of: SO_0000010

position:16873:1
position: 16873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17181:1
position: 17181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16873-17181:1:exon

GAN17_RS25675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25675
old locus tag: GAN17_25840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSADLLAIATGYPALARDVHQAALLPAAPTPAPSGGRPTAARDDGSRPTKLRVPSQVYAVLRDCAARHSIAAGSAAADLLAIATGRTEAVRHLDREVLLLAI
SIO_010081: GAN17_RS25675
subclass of: SO_0000673
so part of: GAN17_RS25675
location: 16873..17181
location: region:16873-17181:1
so has part: feature:16873-17181:1:exon

WP_186275191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16873-17181:1:exon

GAN17_RS25680
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25680
old locus tag: GAN17_25845
so part of: sequence
location: 17489..18667
location: region:17489-18667:1
so has part: feature:17489-18667:1:exon
subclass of: SO_0000010

position:17489:1
position: 17489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18667:1
position: 18667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17489-18667:1:exon

GAN17_RS25680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25680
old locus tag: GAN17_25845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008264013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MARTGPRAGALLAANCRAIAAVIVLELGEAPYAGVPCWSGRAQRWATFTVAVAYDCRYDTAVRPLMPGNPISRRALLAVAAARAGYADYGTGRNCRPSNERLAADTGYSVRTVQRADAVLRLLGVASEVLRGRQRTRMERLASWRVGDRGRGWASVWALHDNRQLTGLVSGLSPHPRSGPVRDKHSPNQVVTTGTGGPAGRRQGGAPRRRAPDAGGAGLARAWRADSHAPPWARRHSAAAWAAILAGPAAHGWSPRDLNALIGDWAGVSGRRIPDAPHKPIGLLGAMLAWHGRERLEERPAALDEAREAVERAAHQAHLAAQRAAHTEHERARAAGRAALGSAGHTAARAIAAEAARAAARKRARAAAHDAARVAAAAAAARTPPLRSEPRG
SIO_010081: GAN17_RS25680
subclass of: SO_0000673
so part of: GAN17_RS25680
location: 17489..18667
location: region:17489-18667:1
so has part: feature:17489-18667:1:exon

WP_154074439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17489-18667:1:exon

GAN17_RS25685
type: Gene
subclass of: SO_0000704
RO_0002162: 120959
locus tag: GAN17_RS25685
so part of: sequence
location: complement(18664..18816)
location: region:18664-18816:-1
so has part: feature:18664-18816:-1:exon
subclass of: SO_0000010

position:18664:-1
position: 18664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18816:-1
position: 18816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18664-18816:-1:exon

GAN17_RS25685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120959
locus tag: GAN17_RS25685
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDYETALTELLVRRAQLGSERVLDWLVYGTPLARLPRLDVVCGDHRAGPY
SIO_010081: GAN17_RS25685
subclass of: SO_0000673
so part of: GAN17_RS25685
location: complement(18664..18816)
location: region:18664-18816:-1
so has part: feature:18664-18816:-1:exon

WP_154074436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18664-18816:-1:exon