Mycobacterium kubicae strain NJH_MKUB1 plasmid pNJH02, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex.
Complete genomes of two Mycobacterium kubicae isolates
Submitted (03-OCT-2019) Center for Genes, Environment, and Health, National Jewish Health, 1400 Jackson Street, Denver, CO 80206, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP045083.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 313x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:04:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,156\nCDSs (total) :: 5,101\nGenes (coding) :: 4,992\nCDSs (with protein) :: 4,992\nGenes (RNA) :: 55\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 109\nCDSs (without protein) :: 109\nPseudo Genes (ambiguous residues) :: 0 of 109\nPseudo Genes (frameshifted) :: 48 of 109\nPseudo Genes (incomplete) :: 64 of 109\nPseudo Genes (internal stop) :: 12 of 109\nPseudo Genes (multiple problems) :: 14 of 109\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013470225.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007170186.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011896076.1
COORDINATES: similar to AA sequence:RefSeq:WP_007769392.1
COORDINATES: similar to AA sequence:RefSeq:WP_015355689.1
COORDINATES: similar to AA sequence:RefSeq:WP_003879054.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007769389.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016893159.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011896331.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012296900.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805724.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_005088169.1
COORDINATES: similar to AA sequence:RefSeq:WP_008264013.1
helix-turn-helix domain-containing protein