Celeribacter indicus strain P73 plasmid pP73D, complete sequence.
type: Entry
definition: Celeribacter indicus strain P73 plasmid pP73D, complete sequence.
sequence version: NZ_CP004397.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_CP004397.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03280159
keyword: RefSeq
source: Celeribacter indicus
organism: Celeribacter indicus
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Celeribacter.
reference: 1
references: 25582347
reference: 2
references: 25256706
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP004397.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Soapdenovo v. 1.05\nGenome Coverage :: 488x\nSequencing Technology :: Sanger dideoxy sequencing; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:31:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,918\nCDSs (total) :: 4,861\nGenes (coding) :: 4,801\nCDSs (with protein) :: 4,801\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 20 of 60\nPseudo Genes (incomplete) :: 51 of 60\nPseudo Genes (internal stop) :: 4 of 60\nPseudo Genes (multiple problems) :: 13 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19262
topology: circular
so has quality: SO_0000988
location: 1..19262
location: region:1-19262:1
RO_0002162: 1208324

NZ_CP004397
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03280159
type: BioSample
SIO_000068: biosample

1
title: Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T
author: Cao, J.
author: Lai, Q.
author: Yuan, J.
author: Shao, Z.
journal: Sci Rep 5, 7741 (2015)
pubmed: 25582347
comments: Publication Status: Online-Only

25582347
type: PubMed
SIO_000068: pubmed

2
title: Celeribacter indicus sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium from deep-sea sediment and reclassification of Huaishuia halophila as Celeribacter halophilus comb. nov
author: Lai, Q.
author: Cao, J.
author: Yuan, J.
author: Li, F.
author: Shao, Z.
journal: Int J Syst Evol Microbiol 64 (Pt 12), 4160-4167 (2014)
pubmed: 25256706

25256706
type: PubMed
SIO_000068: pubmed

3
title: Direct Submission
author: Cao, J.
author: Lai, Q.
author: Shao, Z.
journal: Submitted (26-MAR-2013) State of Oceanic Administration (SOA), The Third Institute of State Oceanic Administration (SOA), Daxue Road 184#, Xiamen, Fujian 361005, P.R.China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19262:1
position: 19262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19262:1:source
so part of: sequence
organism: Celeribacter indicus
mol type: genomic DNA
strain: P73
culture collection: MCCC:1A01112
type material: type strain of Celeribacter indicus
plasmid: pP73D

1208324
type: Taxonomy
SIO_000068: taxonomy

P73_RS24060
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24060
old locus tag: P73_4797
so part of: sequence
location: 1..1035
location: region:1-1035:1
so has part: feature:1-1035:1:exon
subclass of: SO_0000010

position:1035:1
position: 1035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1035:1:exon

P73_RS24060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24060
old locus tag: P73_4797
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011382076.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVTDNTNTLAPLLPDRHPQHDLFICDVADAVLKDVMQHMEHPFYSLSKKPETTIKRYENGDKWLQITPSVKGLATIYDKDILIYCISQIMAKLKAGEAVSPRVRINSRELLIFTNRGTSGREYQSLRDALDRLEGTRIRTNIVTGDEEQVDGFGLIDASSIRRKHGLDGRLLWCEVKLSDWVFNAIRNEEVLTLHRDYFRLRKPIERRVYEIARKHCGQQKTWRITLAKLLLKTGSQSPQKRFRQMIRQLAEHDHLPDYHVTFEDEADMVVFTNRGTMSPAQLVEGRIPPLQSDTYEEARHAAPGWDVRFLEREWRDWCVEPPRNADRAFIGFCRKWFEKRGRP
SIO_010081: P73_RS24060
subclass of: SO_0000673
so part of: P73_RS24060
location: 1..1035
location: region:1-1035:1
so has part: feature:1-1035:1:exon

WP_043872377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1035:1:exon

P73_RS24065
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24065
old locus tag: P73_4798
so part of: sequence
location: 1148..1816
location: region:1148-1816:1
so has part: feature:1148-1816:1:exon
subclass of: SO_0000010

position:1148:1
position: 1148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1816:1
position: 1816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148-1816:1:exon

P73_RS24065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24065
old locus tag: P73_4798
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655537.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVIVMASPKGGVGKSTCAVLLASEFARMGADVTVLDCDPNKSLTRWASHGAPSGVTLKSDVGRSEIVPTIRSADGDGKIVIVDLEGVASQLVSRAISQADLVIVPMQPTALDAEIGSEALALVREEEEALGRSIRHAVVLTKTSAAVKSRVHKELEAQLNRAGIDVIEPSLVARSAFSELFAYGGDLTAMMNDPEMVTGGKVDKALANAQAFTEAVYERLK
SIO_010081: P73_RS24065
subclass of: SO_0000673
so part of: P73_RS24065
location: 1148..1816
location: region:1148-1816:1
so has part: feature:1148-1816:1:exon

WP_043872378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148-1816:1:exon

P73_RS24070
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
gene: dcm
locus tag: P73_RS24070
old locus tag: P73_4799
so part of: sequence
location: 2180..3400
location: region:2180-3400:1
so has part: feature:2180-3400:1:exon
subclass of: SO_0000010

position:2180:1
position: 2180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3400:1
position: 3400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2180-3400:1:exon

P73_RS24070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
gene: dcm
locus tag: P73_RS24070
old locus tag: P73_4799
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005628321.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
translation: MTEFEMLLTQSGWSMPEAAKALGYSEGHLYRWKRGEEVPREAVMKLLRMEVRSRQRHDNNASFSFIDLFAGIGGLRRAMEGAGGRCVFTSEWDRFAQQTYHANFPDNRPIAGDIREVDPEDIPDHDVLVAGFPCQPFSIAGVSKKNALGRAHGFLDETQGTLFFDVLRILMHHRPAAFMLENVKNLKSHDKGRTFEVIRRALTEELGYTLHTQIIDAANFVPQHRERIVMVGFREATDFSFEELNLPGRQGRGMRDILHPENGAEAPEGHYTVGPDAKVSDKYTLTDKLWAYLQDYAAKHRAKGNGFGFGLVDGDSIARTLSARYYKDGSEILVSRGEGRNPRRLTPRECARLMGFDDSFRIPVSDTQAYKQFGNSVAVPVFAEVARLMQPHVLKLMDQPRLQKVG
SIO_010081: P73_RS24070
subclass of: SO_0000673
so part of: P73_RS24070
location: 2180..3400
location: region:2180-3400:1
so has part: feature:2180-3400:1:exon

WP_043872379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2180-3400:1:exon

P73_RS24075
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24075
old locus tag: P73_4800
so part of: sequence
location: 3393..3854
location: region:3393-3854:1
so has part: feature:3393-3854:1:exon
subclass of: SO_0000010

position:3393:1
position: 3393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3854:1
position: 3854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3393-3854:1:exon

P73_RS24075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24075
old locus tag: P73_4800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013962693.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: very short patch repair endonuclease
translation: MADVHSADARRRNMAAIRGKDTKPELMIRRALHAKGFRYRLQGRGLPGRPDIVLPKHHAVIFVHGCFWHRHDCPLFRWPQTRQGFWREKINGNARRDAEAVGHLLDVGWRVGIVWECALKGRGKRPLPEVIDSLSLWLSSDTKQFCVEGQWID
SIO_010081: P73_RS24075
subclass of: SO_0000673
so part of: P73_RS24075
location: 3393..3854
location: region:3393-3854:1
so has part: feature:3393-3854:1:exon

WP_043872380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3393-3854:1:exon

P73_RS24080
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24080
old locus tag: P73_4801
so part of: sequence
location: 3832..5175
location: region:3832-5175:1
so has part: feature:3832-5175:1:exon
subclass of: SO_0000010

position:3832:1
position: 3832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5175:1
position: 5175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3832-5175:1:exon

P73_RS24080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24080
old locus tag: P73_4801
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013478978.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MvaI/BcnI family restriction endonuclease
translation: MKANGLTDPVVRILDQMAAHGATRFYAKQLAPNDNSKNQVYLGGGFGALNIIPHGEIEEDGSQVAGSVRDRAKAPVDFWWMDEQGIAPAPDAQLILYPKYPEVRMSGFLRGAARAPAPLMRSRDEGRVLFFGVCQDGRVIGHVVGRETPEAATLADKVDTLEASGVFLDLQSLRQKGASSRQMLLDALRRIHAKGWVPSQKMGKNGLAAPYNARNGGGYTLEAELGISPNGYAEPDYLGWEVKQYGVRDFVKYLAKSPVTLMTPEPTGGVYRDEGVEAFLRRYGYPDKSGKEGRINFGGVYASGRDFHNDTGLKLVLEGFDPDKGKITDVEGQIALIDREDVVAASWGFKGVIGHWNRKHAKAVYVPSLMRAPPPEYSYGSRVELCEGTDVLLLLQALASGAVYYDPGIKMEKADTPAPVTKRRSQFRVKHNDLSGLYQTSKRERLA
SIO_010081: P73_RS24080
subclass of: SO_0000673
so part of: P73_RS24080
location: 3832..5175
location: region:3832-5175:1
so has part: feature:3832-5175:1:exon

WP_217639053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3832-5175:1:exon

P73_RS24085
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24085
old locus tag: P73_4802
so part of: sequence
location: complement(5254..5973)
location: region:5254-5973:-1
so has part: feature:5254-5973:-1:exon
subclass of: SO_0000010

position:5254:-1
position: 5254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5973:-1
position: 5973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5254-5973:-1:exon

P73_RS24085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24085
old locus tag: P73_4802
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQMRDYADERHKGWCIHCNAVLGNVESNLDHVPSKTILDRPFPNDLPTVRICKSCNTSFSNDEEYFTAFLGSVLAGSADPDQQVVARSEKILRSNYRLQDEIDSQLQIVKDAEGNDQITFVPDMAKIQNVVVKNARGHVLFEHGQPAEGEPARVAIQPIPTLSPDILANFETIDYGAGWPEVGSRLMQRLVTGDDMRPDGWVVVQPNVYRFAVMDQGQFVVRTVIREYLATEVAWDRI
SIO_010081: P73_RS24085
subclass of: SO_0000673
so part of: P73_RS24085
location: complement(5254..5973)
location: region:5254-5973:-1
so has part: feature:5254-5973:-1:exon

WP_043872382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5254-5973:-1:exon

P73_RS24090
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24090
old locus tag: P73_4803
so part of: sequence
location: complement(6003..6542)
location: region:6003-6542:-1
so has part: feature:6003-6542:-1:exon
subclass of: SO_0000010

position:6003:-1
position: 6003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6542:-1
position: 6542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6003-6542:-1:exon

P73_RS24090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24090
old locus tag: P73_4803
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655531.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSTEDQSLDAQTDALTAAGANKLFADRISGSKRERPELDRMLEQLRDGDIVTVTKYDRLARSLKDLLEIVETIRGRGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERISERTKEGLASARKRGRIGGRPPALSPAQKEEVRRMRDDEHRAVPEIARLFKVSERTVRRA
SIO_010081: P73_RS24090
subclass of: SO_0000673
so part of: P73_RS24090
location: complement(6003..6542)
location: region:6003-6542:-1
so has part: feature:6003-6542:-1:exon

WP_043872383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6003-6542:-1:exon

P73_RS24095
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24095
old locus tag: P73_4804
so part of: sequence
location: 6658..7710
location: region:6658-7710:1
so has part: feature:6658-7710:1:exon
subclass of: SO_0000010

position:6658:1
position: 6658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7710:1
position: 7710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6658-7710:1:exon

P73_RS24095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24095
old locus tag: P73_4804
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009489285.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MGEVVDLFCGVGSLSHGLMRAGFDIRAGYDTDRRCKHAFETNNEATFHTRDVALLQPEEILAHFSGERPSVLAGCAPCQPFSTYKQRYDEDPRWDLVDSFARLAVKVSPDFITMENVPALLKYKAGAVFSNFSQTLQNAGYHVSWQVAKCELFGVPQKRRRLVVVASKAANPPQLSPTHQTPLTVKDAIANLPPVSAGTRAENDPLHISASLSETNLRRIRASKPGGTWRDWPYELRAKCHQRSSGKTYSGVYARMVWDAPSPTMTTQCYGYGNGRFGHPEQDRAITLREAALLQSFPPHYSFLPDGEIPNMSEVGRWIGNAVPVGLAQAIGRCIGSVIEENEFGSREIT
SIO_010081: P73_RS24095
subclass of: SO_0000673
so part of: P73_RS24095
location: 6658..7710
location: region:6658-7710:1
so has part: feature:6658-7710:1:exon

WP_043872384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6658-7710:1:exon

P73_RS24100
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24100
old locus tag: P73_4805
so part of: sequence
location: 7688..8308
location: region:7688-8308:1
so has part: feature:7688-8308:1:exon
subclass of: SO_0000010

position:7688:1
position: 7688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8308:1
position: 8308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7688-8308:1:exon

P73_RS24100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24100
old locus tag: P73_4805
inference: COORDINATES: protein motif:HMM:NF024977.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MAAEKSPDPYRFEISLSVLNHLGRNLYRNFVTVLGEAISNSWDANAKNVWIEIDRENSSFSIKDDGDGMDSGDFQGKFLKIGYSKRKAGGSKSSTGRPYIGAKGIGKLALLSCAKRVSVFSKTGGTDYVGGVIDNAGLDGAILGDRSTEEYPLEQLDFSLISELREGHQKGTIIYFEGTNDQLKNSDAYINPHYSPSRLGGALEAG
SIO_010081: P73_RS24100
subclass of: SO_0000673
so part of: P73_RS24100
location: 7688..8308
location: region:7688-8308:1
so has part: feature:7688-8308:1:exon

WP_074743467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7688-8308:1:exon

P73_RS24105
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24105
old locus tag: P73_4806
so part of: sequence
location: complement(8488..9909)
location: region:8488-9909:-1
so has part: feature:8488-9909:-1:exon
subclass of: SO_0000010

position:8488:-1
position: 8488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9909:-1
position: 9909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8488-9909:-1:exon

P73_RS24105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24105
old locus tag: P73_4806
inference: COORDINATES: protein motif:HMM:NF025080.2
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1380 family transposase
translation: MGETLRPVTAGFNRSLSIETRAERLTGDPGAVLLREALDATGIIGWMAARMKDSRRQADVVHDLPSLLRTMVLLVAQGWQDHDDADALRHDPAMRVAAASSAGLTPLTGHPGLASQPTLSRCTAMLAEPGNLKVLREAALELAGRNLRAENGGQRRTRMTLDVDSLPIEVHGHQPKAEWNGHYRTRVYHPLVTSIAETGDMLDARLRPGNVGTADGALDVILDVVDRAEASLCKITTVRIDAGFPSGALLSGLEGRGIHHVARLRANAALDRLAAPHMKRPPGRRPTEPRLWTHELEYQAQGWDEPRRVVLVVKEREGDLLLDRFFLVTSISRFQMKGQALLDHYRQRGKAEGHMGELMDVLSPALSSTNRAKTHLRGKKPKSVTPPIDAFACNEVRLLVAMLAYQIMHVARRAMARATKAPWSLRRLRERVLRAGARLIISARRMTLILAATAAPYWAAIWPQIQMLRGADP
SIO_010081: P73_RS24105
subclass of: SO_0000673
so part of: P73_RS24105
location: complement(8488..9909)
location: region:8488-9909:-1
so has part: feature:8488-9909:-1:exon

WP_074743528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8488-9909:-1:exon

P73_RS24110
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24110
old locus tag: P73_4807
so part of: sequence
location: 10050..11105
location: region:10050-11105:1
so has part: feature:10050-11105:1:exon
subclass of: SO_0000010

position:10050:1
position: 10050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11105:1
position: 11105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10050-11105:1:exon

P73_RS24110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24110
old locus tag: P73_4807
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDEEFTIHVSGDPVTVDDLKPLSDATQFLWSVNGYTDAYIDGLNTLELPASEVTTPLDIKGFVASVKKPANLKITGTDERATIDLFVNGRLREKNIIRHIPSQRIVESYIYGQIHFDTLDREGTDPFTSSREGIVEDDEKFRSLMDYLKRDLLTKIIDEWDKFRLEVKDEGDDDNTRKSKRDRKAQALVSEAKKDFQPNDDAPTKDIVEEWLTEMQADAEFNTSAYVDCFLSENLVRKYIGHKNLSPIDGIQKEIVKFKEREEKTKQAANISFPIRQTSLDLSYLDMDALAFTAEGSKSTNTQSLWGDAIGFKPVRNAVGHTGRLTNVAKNHLNTTFENIKARVRTLLSN
SIO_010081: P73_RS24110
subclass of: SO_0000673
so part of: P73_RS24110
location: 10050..11105
location: region:10050-11105:1
so has part: feature:10050-11105:1:exon

WP_052453663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10050-11105:1:exon

P73_RS24115
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24115
old locus tag: P73_4808
so part of: sequence
location: complement(11334..12392)
location: region:11334-12392:-1
so has part: feature:11334-12392:-1:exon
subclass of: SO_0000010

position:11334:-1
position: 11334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12392:-1
position: 12392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11334-12392:-1:exon

P73_RS24115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24115
old locus tag: P73_4808
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015484794.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MSIYALWNNKGGVGKSYLSFQVASEYARTHPQQKVLVVDLCPQANSSSMLLGGMERGEDAIEALSANRPAQTISGYVAERIVSPYMTPHSGANFLTQVSQHNHFVSDNLYLVCGDEELEMQSSQVRLACTAGPADAWRIVHTWISDLIEDVRRSWGQERITVFIDCNPSFTIYTEMAMSAADRLIIPFSADGSSKRAVKSVLSLVYGIQRRPGQVQSEFYRNSMQYRMSLPLIYSYVGNRLTQMNNSSASAFRNVVNEIFDEVFSVWQNQPQLFCPHPSGTPAPTSKRGFKQMFEEQINDANTASVVSGAMGIPINRLTAGQKSFAGRSVMVNQSQLDKQQPNIAGFVQEIE
SIO_010081: P73_RS24115
subclass of: SO_0000673
so part of: P73_RS24115
location: complement(11334..12392)
location: region:11334-12392:-1
so has part: feature:11334-12392:-1:exon

WP_043872386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11334-12392:-1:exon

P73_RS24125
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24125
old locus tag: P73_4810
so part of: sequence
location: complement(12691..13575)
location: region:12691-13575:-1
so has part: feature:12691-13575:-1:exon
subclass of: SO_0000010

position:12691:-1
position: 12691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13575:-1
position: 13575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12691-13575:-1:exon

P73_RS24125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24125
old locus tag: P73_4810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011536558.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MTAEKFDVYSHVTNQIIAQIEAGTPPWRKPWTGGGVSVSLPERFNGEAYRGINILMLWATAMAKDYSSARWMTFNQAKQFGGHVRKGEKSATVVKYGTVEREDENGEERQIPYAKAYRVFNADQIEGLPAEFYILPDPPRDLGTVADPTLEAFFAASGAQIDVTEEPRAYYNIKTDRIHMPPIGTFHRAAGYYGTLAHELTHWTGATKRLDRLGRFNDRKAYAFEELVAEIGNCMLCAQIGVEPEFDQSAAYVEGWLEAMKEDSRAIFRAASEAQKAVDYIMARTAQADRMAAE
SIO_010081: P73_RS24125
subclass of: SO_0000673
so part of: P73_RS24125
location: complement(12691..13575)
location: region:12691-13575:-1
so has part: feature:12691-13575:-1:exon

WP_043872388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12691-13575:-1:exon

P73_RS24130
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24130
old locus tag: P73_4811
so part of: sequence
location: 14036..14245
location: region:14036-14245:1
so has part: feature:14036-14245:1:exon
subclass of: SO_0000010

position:14036:1
position: 14036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14245:1
position: 14245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14036-14245:1:exon

P73_RS24130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24130
old locus tag: P73_4811
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009574101.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNLRERVAKNIIDRRKSIGLSQEDLARQAGLSRAYVGKIENARFSVTIDTIEKIAHALEVEADVLFEPR
SIO_010081: P73_RS24130
subclass of: SO_0000673
so part of: P73_RS24130
location: 14036..14245
location: region:14036-14245:1
so has part: feature:14036-14245:1:exon

WP_043872389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14036-14245:1:exon

P73_RS24135
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24135
old locus tag: P73_4812
so part of: sequence
location: complement(14278..14553)
location: region:14278-14553:-1
so has part: feature:14278-14553:-1:exon
subclass of: SO_0000010

position:14278:-1
position: 14278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14553:-1
position: 14553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14278-14553:-1:exon

P73_RS24135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24135
old locus tag: P73_4812
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009819899.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYEVFNVGKTILLDGKPLSLVTPAGVEGWIEKGIPHSYRYDRVRDPLDGRMKYRCLYETDGADVPFVLVNDPDSGDGRVILFDQKPDAPVE
SIO_010081: P73_RS24135
subclass of: SO_0000673
so part of: P73_RS24135
location: complement(14278..14553)
location: region:14278-14553:-1
so has part: feature:14278-14553:-1:exon

WP_043872390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14278-14553:-1:exon

P73_RS24140
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
gene: mobQ
locus tag: P73_RS24140
old locus tag: P73_4813
so part of: sequence
location: complement(14589..15881)
location: region:14589-15881:-1
so has part: feature:14589-15881:-1:exon
subclass of: SO_0000010

position:14589:-1
position: 14589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15881:-1
position: 15881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14589-15881:-1:exon

P73_RS24140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
gene: mobQ
locus tag: P73_RS24140
old locus tag: P73_4813
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009804240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWATDRSRLWNEVEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHVLTSTRKLEPGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREDALKRGDELSAEELDRDPELKLGPAANSMERRAKAMAERQGREYKPVTERGAVVHAARQARAAFREMRARLELARETYGIEREAGQGRVSAGLAALRAATAKDRDRDRNPEDFRERLARVVARSRDQGDTPKPEDRNYARERLKEIMEKDAGHDGQAAVHKLDGHSEYDLGEETGRAVRKPSVNERLKDVLNKPRERLEIEDEREQERGDDENENTRDRDRGEGHSL
SIO_010081: P73_RS24140
subclass of: SO_0000673
so part of: P73_RS24140
location: complement(14589..15881)
location: region:14589-15881:-1
so has part: feature:14589-15881:-1:exon

WP_043872391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14589-15881:-1:exon

P73_RS24145
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24145
old locus tag: P73_4814
so part of: sequence
location: 16520..16810
location: region:16520-16810:1
so has part: feature:16520-16810:1:exon
subclass of: SO_0000010

position:16520:1
position: 16520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16810:1
position: 16810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16520-16810:1:exon

P73_RS24145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24145
old locus tag: P73_4814
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAETELERAEKRYAQAKARLQALKNREATRQRKLDTRRKVILGGALMDLAERDTSAAAMLDRLIRNLSREQDRKAFAEWDTPSHSPSPDTGQSDAT
SIO_010081: P73_RS24145
subclass of: SO_0000673
so part of: P73_RS24145
location: 16520..16810
location: region:16520-16810:1
so has part: feature:16520-16810:1:exon

WP_043872392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16520-16810:1:exon

P73_RS24150
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24150
old locus tag: P73_4815
so part of: sequence
location: 16810..18468
location: region:16810-18468:1
so has part: feature:16810-18468:1:exon
subclass of: SO_0000010

position:18468:1
position: 18468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16810-18468:1:exon

P73_RS24150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24150
old locus tag: P73_4815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009804242.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MRALSLAFWRLFRFIQVLIVTPILVGGTLVFLLIGAAVGAVVATPLVFAFFDQAPGESLANWLVLIPCMVIGAVVGVAMWFQMSGAETFFGNLVGASHGSARFAGKRELKALEQAKGLLIGRNPRTGKLLSYDGPAHLLTLAPTRAGKGVGTVIPNLLAADRSVLVIDPKGENARIAGAARERFGTVHVLDPFEVSGRSSSAYNPLDRLSADSPDLSEDAASLADALVVDPAHQTGDAHWNEEAKALIGGLIMFCAAHEEPERRNLGSVREYLTLPPDRLKALLELMQESESADGLIARAANRFVGKAEREAASVLSNAQRHTHFLDSPRIAKCMARSDFTFSDLRHRITSVFLVLPPNRLDAYSRWLRLLVSQALQDIARDAERPQGASEGRSERLKAPALFLLDEFAALGRLEAVERAMGLMAGYGLQLWPILQDMSQLRDLYGQRAATFVANAGVQQVFGVNDYDTAKWLSQTMGQETIGYQTESRKPGDMPTTGIQVTGRDLLTPDEIMQFQPELQLLRVQGQATAVAQKLRYYADPEFAGLFTPDAR
SIO_010081: P73_RS24150
subclass of: SO_0000673
so part of: P73_RS24150
location: 16810..18468
location: region:16810-18468:1
so has part: feature:16810-18468:1:exon

WP_043872395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16810-18468:1:exon

P73_RS24155
type: Gene
subclass of: SO_0000704
RO_0002162: 1208324
locus tag: P73_RS24155
old locus tag: P73_4816
so part of: sequence
location: 18486..19037
location: region:18486-19037:1
so has part: feature:18486-19037:1:exon
subclass of: SO_0000010

position:18486:1
position: 18486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19037:1
position: 19037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18486-19037:1:exon

P73_RS24155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1208324
locus tag: P73_RS24155
old locus tag: P73_4816
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009804243.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDTSASPAPLSDDDLRETLDLLATAVASISDRVDDQTRVLDRVNKTATEARSAAFAAQKQTDPEHYGEIVGATIDSRIGDTLTRVGQMAGDLLRASNHTQEVLRKAEDAKSDTTRQLWEREQKLDRFKGRLPWFGLSAVVLALVLTVTLPRFLASNASTCAVLGASWTRTTTGVDACVFYQR
SIO_010081: P73_RS24155
subclass of: SO_0000673
so part of: P73_RS24155
location: 18486..19037
location: region:18486-19037:1
so has part: feature:18486-19037:1:exon

WP_043872393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18486-19037:1:exon