Celeribacter indicus strain P73 plasmid pP73D, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Celeribacter.
Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T
Celeribacter indicus sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium from deep-sea sediment and reclassification of Huaishuia halophila as Celeribacter halophilus comb. nov
Int J Syst Evol Microbiol 64 (Pt 12), 4160-4167 (2014)
Submitted (26-MAR-2013) State of Oceanic Administration (SOA), The Third Institute of State Oceanic Administration (SOA), Daxue Road 184#, Xiamen, Fujian 361005, P.R.China
REFSEQ INFORMATION: The reference sequence is identical to\nCP004397.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Soapdenovo v. 1.05\nGenome Coverage :: 488x\nSequencing Technology :: Sanger dideoxy sequencing; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:31:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,918\nCDSs (total) :: 4,861\nGenes (coding) :: 4,801\nCDSs (with protein) :: 4,801\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 20 of 60\nPseudo Genes (incomplete) :: 51 of 60\nPseudo Genes (internal stop) :: 4 of 60\nPseudo Genes (multiple problems) :: 13 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011382076.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011655537.1
COORDINATES: similar to AA sequence:RefSeq:WP_005628321.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013962693.1
COORDINATES: similar to AA sequence:RefSeq:WP_013478978.1
MvaI/BcnI family restriction endonuclease
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011655531.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489285.1
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF025080.2
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015484794.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536558.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009574101.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009819899.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804240.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503752.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804242.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009804243.1