Celeribacter indicus strain P73 plasmid pP73A, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Celeribacter.
Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T
Celeribacter indicus sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium from deep-sea sediment and reclassification of Huaishuia halophila as Celeribacter halophilus comb. nov
Int J Syst Evol Microbiol 64 (Pt 12), 4160-4167 (2014)
Submitted (26-MAR-2013) State of Oceanic Administration (SOA), The Third Institute of State Oceanic Administration (SOA), Daxue Road 184#, Xiamen, Fujian 361005, P.R.China
REFSEQ INFORMATION: The reference sequence is identical to\nCP004394.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Soapdenovo v. 1.05\nGenome Coverage :: 488x\nSequencing Technology :: Sanger dideoxy sequencing; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:31:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,918\nCDSs (total) :: 4,861\nGenes (coding) :: 4,801\nCDSs (with protein) :: 4,801\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 20 of 60\nPseudo Genes (incomplete) :: 51 of 60\nPseudo Genes (internal stop) :: 4 of 60\nPseudo Genes (multiple problems) :: 13 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005854399.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007802646.1
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495611.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
homoprotocatechuate degradation operon regulator HpaR
COORDINATES: similar to AA sequence:RefSeq:WP_007797893.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572632.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_017979097.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002965036.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018064825.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009572628.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396125.1
GO:0018467 - formaldehyde dehydrogenase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
formaldehyde dehydrogenase, glutathione-independent
COORDINATES: similar to AA sequence:RefSeq:WP_008134767.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF037995.1
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_010442809.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_020042270.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF004824.0
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013533137.1
COORDINATES: protein motif:HMM:NF024799.2
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013533139.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019859239.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009574187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008889673.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008546425.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007091359.1
COORDINATES: similar to AA sequence:RefSeq:WP_006698400.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014753301.1
COORDINATES: similar to AA sequence:RefSeq:WP_020010180.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572620.1
sarcosine oxidase subunit gamma family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010973741.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505681.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015411.2
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018442178.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009522055.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012248202.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000534.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018643399.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003258714.1
COORDINATES: similar to AA sequence:RefSeq:WP_008594619.1
COORDINATES: protein motif:HMM:NF024772.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016999.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_012091472.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014299705.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397477.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973581.1
COORDINATES: similar to AA sequence:RefSeq:WP_014745653.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934002.1
COORDINATES: protein motif:HMM:NF015445.2
COORDINATES: protein motif:HMM:NF014664.2
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020039403.1
COORDINATES: similar to AA sequence:RefSeq:WP_020651934.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399053.1
NADPH:quinone oxidoreductase family protein
COORDINATES: protein motif:HMM:NF014757.2
COORDINATES: similar to AA sequence:RefSeq:WP_002711317.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011582263.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399047.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009521917.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019198734.1
COORDINATES: similar to AA sequence:RefSeq:WP_010141133.1
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332817.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_013654443.1
COORDINATES: similar to AA sequence:RefSeq:WP_009211061.1
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_018442782.1
COORDINATES: similar to AA sequence:RefSeq:WP_006915338.1
COORDINATES: protein motif:HMM:NF015905.2
COORDINATES: similar to AA sequence:RefSeq:WP_016737755.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018000544.1
COORDINATES: similar to AA sequence:RefSeq:WP_014996518.1
COORDINATES: similar to AA sequence:RefSeq:WP_007671014.1
COORDINATES: protein motif:HMM:NF012955.2
N-acyl homoserine lactonase family protein
COORDINATES: protein motif:HMM:NF014758.2
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008905386.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198739.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018313058.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011808032.1
COORDINATES: similar to AA sequence:RefSeq:WP_018269129.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016161.1
COORDINATES: similar to AA sequence:RefSeq:WP_009522058.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000531.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011582597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046470.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503032.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046507.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654922.1
COORDINATES: similar to AA sequence:RefSeq:WP_018904891.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198747.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198745.1
Zn-ribbon domain-containing OB-fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_018000533.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011582268.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018442790.1
COORDINATES: similar to AA sequence:RefSeq:WP_008964290.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434075.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013332695.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019402659.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175302.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572951.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175290.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140908.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572948.1
COORDINATES: similar to AA sequence:RefSeq:WP_007804093.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019949993.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012187049.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798594.1
COORDINATES: similar to AA sequence:RefSeq:WP_008369200.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651930.1
COORDINATES: similar to AA sequence:RefSeq:WP_020039404.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404156.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343511.1
COORDINATES: similar to AA sequence:RefSeq:WP_014402681.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643394.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_005861686.1