Sphingobium cloacae strain JCM 10874 plasmid pSCLO_5, complete sequence.
type: Entry
definition: Sphingobium cloacae strain JCM 10874 plasmid pSCLO_5, complete sequence.
sequence version: NZ_AP017659.1
sequence date: 2022-12-25
sequence: sequence
division: CON
label: NZ_AP017659.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00053320
keyword: RefSeq
source: Sphingobium cloacae
organism: Sphingobium cloacae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP017659.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 0.2.1\nGenome Coverage :: 382x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 02:22:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,611\nCDSs (total) :: 4,552\nGenes (coding) :: 4,390\nCDSs (with protein) :: 4,390\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 162\nCDSs (without protein) :: 162\nPseudo Genes (ambiguous residues) :: 0 of 162\nPseudo Genes (frameshifted) :: 61 of 162\nPseudo Genes (incomplete) :: 120 of 162\nPseudo Genes (internal stop) :: 14 of 162\nPseudo Genes (multiple problems) :: 28 of 162\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 57701
topology: circular
so has quality: SO_0000988
location: 1..57701
location: region:1-57701:1
RO_0002162: 120107

NZ_AP017659
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00053320
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium cloacae JCM 10874T
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Unpublished

2
title: Direct Submission
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Submitted (04-OCT-2016) Contact:Tomoyasu Nishizawa Ibaraki University College of Agriculture, Department of Bioresource sience; 3-21-1 Chuou, Ami, Ibaraki 300-0393, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57701:1
position: 57701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-57701:1:source
so part of: sequence
organism: Sphingobium cloacae
mol type: genomic DNA
strain: JCM 10874
culture collection: JCM:10874
type material: type strain of Sphingobium cloacae
plasmid: pSCLO_5
note: type strain of Sphingobium cloacae

120107
type: Taxonomy
SIO_000068: taxonomy

SCLO_RS21910
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21910
old locus tag: SCLO_5000010
so part of: sequence
location: join(57531..57701,1..657)
location: region:1-57701:1
so has part: feature:57531-57701:1:exon
so has part: feature:1-657:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:57531-57701:1:exon

position:57531:1
position: 57531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-657:1:exon

position:657:1
position: 657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SCLO_RS21910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21910
old locus tag: SCLO_5000010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006954197.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAFLESQLDGWAWWCAGWLSATVELGANPTKACRRSRLIVGKTSTTVHLAYYFKEQGLKVAVIDLDTQGNASFTLGEYDSGALASGLFDAVSQFDLANAGGIAVFSADARLADLEKLDLGAAAGAFKRSLAVIEAEGFDVCLIDTPPSLGVRMAAALLSADFAASPIELEAYSLQGIEKMVTTIANIRRANPALKFLGMIPSKVDGRNPRHGQHLDELTRAYPQLVIPTPIGNRSSVADALASGVPVWSIKRTSARKAAQEMRAMARHIQEKMEI
SIO_010081: SCLO_RS21910
subclass of: SO_0000673
so part of: SCLO_RS21910
location: join(57531..57701,1..657)
location: region:1-57701:1
so has part: feature:57531-57701:1:exon
so has part: feature:1-657:1:exon

WP_096362264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57531-57701:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-657:1:exon

SCLO_RS21915
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21915
old locus tag: SCLO_5000020
so part of: sequence
location: 660..1682
location: region:660-1682:1
so has part: feature:660-1682:1:exon
subclass of: SO_0000010

position:660:1
position: 660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1682:1
position: 1682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660-1682:1:exon

SCLO_RS21915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21915
old locus tag: SCLO_5000020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006954195.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MADNTEDKKPGKSSTKAAQKPAQNAGLGLEGLGDLSSLLASPAAPEGGSGAPLELELALIDEDPNQPRKQFDENSLAEMAETIRERGVKTPISVRPNPKVEGRYLINHGARRYRASLLAEKVTIPGFIDPDYTEADQVIENLQRDALTAREIADYIGRELANGKKKGEIAKAIGKSPAFVTQHAALLDLPEPIAKAFQSGRCKDVTLIYDLVGLHKKHSEGVARWLADADQEITRGSVRLFKEFLESGLSGEAEEESGDDEGNGGASDDAGAGEEKEPKEEDPLKLKKAIVQVSHNKRPARLILNKRPSRDGVAWIKYEDSGEETEADLGKVQLLALLEG
SIO_010081: SCLO_RS21915
subclass of: SO_0000673
so part of: SCLO_RS21915
location: 660..1682
location: region:660-1682:1
so has part: feature:660-1682:1:exon

WP_019053942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:660-1682:1:exon

SCLO_RS21920
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21920
so part of: sequence
location: 1800..1943
location: region:1800-1943:1
so has part: feature:1800-1943:1:exon
subclass of: SO_0000010

position:1800:1
position: 1800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1943:1
position: 1943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1800-1943:1:exon

SCLO_RS21920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQDTPIADPDKFSLDEGTGDPQADADRLLDEARTCWLGTQRVGRWGV
SIO_010081: SCLO_RS21920
subclass of: SO_0000673
so part of: SCLO_RS21920
location: 1800..1943
location: region:1800-1943:1
so has part: feature:1800-1943:1:exon

WP_231923478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1800-1943:1:exon

SCLO_RS21930
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21930
old locus tag: SCLO_5000030
so part of: sequence
location: 2143..3141
location: region:2143-3141:1
so has part: feature:2143-3141:1:exon
subclass of: SO_0000010

position:2143:1
position: 2143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3141:1
position: 3141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2143-3141:1:exon

SCLO_RS21930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21930
old locus tag: SCLO_5000030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008996020.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydroxyquinol 1,2-dioxygenase
translation: MQSAGANALTQTEILPIDNQTGYRAFQAGSFVFRRDDYFARISWPGGTHTMPVDIFLRALMRDVAWGFFYGVVNFDDVIGTINHYGDVTLFAGRFNDAYRNAGRDFEERFASEALMPLFKAMISDWTNEGFDPFAAPMETGLPWGSKNGNNDPAVNRTRVAARRMVGLPGDTPLRTDESGFPVNRMFADVPTDEPVIEAEPGFEDEVSAYNLFNYLARSDVTWNPSVCSVVGDSLFCPTSEEFTLPVDHGNDRCEWFITLSDEIVWDIKDKETGKPRAKVVAKAGDVSCMPADIRHKGYADKRAMLLVWENASPKIPELITQGKAPVVSVTF
SIO_010081: SCLO_RS21930
subclass of: SO_0000673
so part of: SCLO_RS21930
location: 2143..3141
location: region:2143-3141:1
so has part: feature:2143-3141:1:exon

WP_231923479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2143-3141:1:exon

SCLO_RS21935
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21935
old locus tag: SCLO_5000040
so part of: sequence
location: 3238..4701
location: region:3238-4701:1
so has part: feature:3238-4701:1:exon
subclass of: SO_0000010

position:3238:1
position: 3238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4701:1
position: 4701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3238-4701:1:exon

SCLO_RS21935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21935
old locus tag: SCLO_5000040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003448668.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldehyde dehydrogenase family protein
translation: MQTRLLIGGRWVDGAGGGELAVINPYNGAEICKIAEAREEDVDRAVAAAQAAAPGWARLAAHERGRLLLKLADAIEADKDYLARLEATNTGHPVRDCQNLDVPRTVLCFRYFGGMADKLEGAVIPVDAGFLNYVEREPIGVVGQIVPWNFPLMFVSWKLGPALAAGNTVVMKPSEITPLSTLRIGELIKDVGFPDGVVNIVPGYGGTAGQRIADHPHIGKISFTGSTAVGRSIVRASAGNLKKVQLELGGKGPNIVFEDAVIPAAVGGSAFGIFHNQGQACIAASRLILHEKVADAFLEKFINLARSIRLGDPLDTETEMGPLTSRLHHERVLSFVEVARQEGGEILLGGKTPDRDDLRNGFFIEPTVVRADPSHRVQQEEVFGPFVSVTTFRNDEEALAIANGTAYGLGSGLWTQDLARAHRFAKRLHAGMVWINSYKRVHPASPFGGVGESGYGREMGFEAMREYTQPKSVWINVDAPIPPFYPR
SIO_010081: SCLO_RS21935
subclass of: SO_0000673
so part of: SCLO_RS21935
location: 3238..4701
location: region:3238-4701:1
so has part: feature:3238-4701:1:exon

WP_169925574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3238-4701:1:exon

SCLO_RS21940
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21940
so part of: sequence
location: 4849..5073
location: region:4849-5073:1
so has part: feature:4849-5073:1:exon
subclass of: SO_0000010

position:4849:1
position: 4849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5073:1
position: 5073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4849-5073:1:exon

SCLO_RS21940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSLAREEISASSQPLDHVRWHPKSHATFSDALAAVRHELWTSSNFATSRQDGDMQKIPANLLNCLMLVACRPP
SIO_010081: SCLO_RS21940
subclass of: SO_0000673
so part of: SCLO_RS21940
location: 4849..5073
location: region:4849-5073:1
so has part: feature:4849-5073:1:exon

WP_096362267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4849-5073:1:exon

SCLO_RS21945
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21945
old locus tag: SCLO_5000050
so part of: sequence
location: 5245..5841
location: region:5245-5841:1
so has part: feature:5245-5841:1:exon
subclass of: SO_0000010

position:5245:1
position: 5245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5841:1
position: 5841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5245-5841:1:exon

SCLO_RS21945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21945
old locus tag: SCLO_5000050
inference: COORDINATES: protein motif:HMM:NF019335.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor plug domain-containing protein
translation: MQGRKFFAACLACSALALPGGAWAQAQAVAAQPDGSRIDEIIVTANKREQNLSKVGAAVAAFSGGDLAAARVTSVADLPNVTPGLAYTVTANATPVYTLRGVGFYEASLAAYPSVSLYMDQAPLPLPIMASLSLFDLERVEVLKGPQGTLFGNNATAGAINFIAAKPTDQFAAGRRSAIRGSTPSRPRASSPVRSPTG
SIO_010081: SCLO_RS21945
subclass of: SO_0000673
so part of: SCLO_RS21945
location: 5245..5841
location: region:5245-5841:1
so has part: feature:5245-5841:1:exon

WP_169925569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5245-5841:1:exon

SCLO_RS21950
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21950
old locus tag: SCLO_5000060
so part of: sequence
location: 5856..7697
location: region:5856-7697:1
so has part: feature:5856-7697:1:exon
subclass of: SO_0000010

position:5856:1
position: 5856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7697:1
position: 7697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5856-7697:1:exon

SCLO_RS21950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21950
old locus tag: SCLO_5000060
inference: COORDINATES: protein motif:HMM:NF012801.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MRAENGDGWQRSVSRPGDKLGKKDNIAGRFLVDWRAADRLNFSLNVTGWRDQNDPQAPQLTRAAFPNPPGSVGLGGVVPADLPIFAQAPIPEGKARLADWSVGSSLVGASLRPFNDNKFWSAALRTDFDVTEAIQLTSLTSYNRFKMNSTADFDGSPLVVTQYDNHRGSIKNFNQELRLSDDDGAFRWVVGANYEDTKTGELYDADTWDSSSAALNGATTNRTDNFQRMRNYAGFGNVEFDVVDRVTLKGGIRQSRAERSSNGAVYTVPGADHYPGIPYSYTEFFNIVYGLIYGPGTVPPIQPGQSLVLDTRLNPDGTPVDPGTYLTTGRFFGKLNEDSTSWSVGADFRLSDDALLYANVRKGYKSGSFPAITGAIFDALLPVTQESLLDYEAGFKLSLMERMISLSGAAFYYDYKDKQLLTKFVDPVFGLLDRLQNVPKSRVKGAELELSVRPSRQLELSGSVLYLDAKVKDYNGVIGEQVVGGLRQPVLASFEGVALPFSAKWQYSVRAELTQPLSGELEGFVNASVHGQSKSYSTLALTAQSRADYLIDGYALVDGAIGVKTTDERWRLTLWGKNIFNKYYVTNRYLPYDSYVRYAGRPAEYGVTAAFRY
SIO_010081: SCLO_RS21950
subclass of: SO_0000673
so part of: SCLO_RS21950
location: 5856..7697
location: region:5856-7697:1
so has part: feature:5856-7697:1:exon

WP_096362269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5856-7697:1:exon

SCLO_RS21955
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21955
old locus tag: SCLO_5000070
so part of: sequence
location: 8040..8426
location: region:8040-8426:1
so has part: feature:8040-8426:1:exon
subclass of: SO_0000010

position:8040:1
position: 8040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8426:1
position: 8426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8040-8426:1:exon

SCLO_RS21955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21955
old locus tag: SCLO_5000070
inference: COORDINATES: protein motif:HMM:NF024092.2
GO process: GO:0030638 - polyketide metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ester cyclase
translation: MSEQHDVEANRELVLRFYQALERGDFSLEGILFDESYKQHSVMAGDGVKGLKEMAAWMAKEWPDRKLTIHQTICEGDKVACHVHFERWPGDPGLAAVDIFRVENGKVVEHWDVVQEIPTEFKHNNGMF
SIO_010081: SCLO_RS21955
subclass of: SO_0000673
so part of: SCLO_RS21955
location: 8040..8426
location: region:8040-8426:1
so has part: feature:8040-8426:1:exon

WP_169925570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8040-8426:1:exon

SCLO_RS21960
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21960
old locus tag: SCLO_5000080
so part of: sequence
location: complement(8863..9888)
location: region:8863-9888:-1
so has part: feature:8863-9888:-1:exon
subclass of: SO_0000010

position:8863:-1
position: 8863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9888:-1
position: 9888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8863-9888:-1:exon

SCLO_RS21960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21960
old locus tag: SCLO_5000080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018116989.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MGEYIGLDISLKDTTISVRRGGKRIWRGKCPSDPKLIAETIRKHAPNPQRVVFETGPLSVWFYHALVAEGLPAICIDARHAKAALDMAPNKTDANDADGLAQLAEVGFYREVRVKGFDSMLTRTLVTARTRLIRIATELSNQIRGLMKTFGLVVAKGGGRVFEANVRRLLSGHEQLAVIILPLLEAWRSIRGHAAELDRQLVAAARQSQSCQLLMSIPGVGAVTAASFTAAIEDPDNFQRSRSVGAWLGLTTRRFQSGEVDFDGHISRRGDAHLRGLLYEAATVILTRSTADSALRTWGLQLRAKIGFKRTAVAVARKLAVIMHRMLTTGELFNRSAGVPA
SIO_010081: SCLO_RS21960
subclass of: SO_0000673
so part of: SCLO_RS21960
location: complement(8863..9888)
location: region:8863-9888:-1
so has part: feature:8863-9888:-1:exon

WP_096362271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8863-9888:-1:exon

SCLO_RS21965
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21965
old locus tag: SCLO_5000090
pseudo: true
so part of: sequence
location: 10142..>10474
location: region:10142-10474:1
so has part: feature:10142-10474:1:exon
subclass of: SO_0000010

position:10142:1
position: 10142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10474:1
position: 10474
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10142-10474:1:exon

SCLO_RS21965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21965
old locus tag: SCLO_5000090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013833393.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS110 family transposase
SIO_010081: SCLO_RS21965
subclass of: SO_0000673
so part of: SCLO_RS21965
location: 10142..>10474
location: region:10142-10474:1
so has part: feature:10142-10474:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10142-10474:1:exon

SCLO_RS21970
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21970
old locus tag: SCLO_5000100
so part of: sequence
location: 10542..10928
location: region:10542-10928:1
so has part: feature:10542-10928:1:exon
subclass of: SO_0000010

position:10542:1
position: 10542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10928:1
position: 10928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10542-10928:1:exon

SCLO_RS21970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21970
old locus tag: SCLO_5000100
inference: COORDINATES: protein motif:HMM:NF013677.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MAEAIVSEPKGERRRWSDDEKRAAVELSLEPGASVKEVAACFGVSPAQLYAWRRELREGCAGADAPLFLPAVVERVPEGDAAPPAPRWLMPEALVAVALEVGGASVVIARGAEPALAAAVISALQGMR
SIO_010081: SCLO_RS21970
subclass of: SO_0000673
so part of: SCLO_RS21970
location: 10542..10928
location: region:10542-10928:1
so has part: feature:10542-10928:1:exon

WP_096362272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10542-10928:1:exon

SCLO_RS23535
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
gene: tnpB
locus tag: SCLO_RS23535
old locus tag: SCLO_5000110
so part of: sequence
location: 10925..11299
location: region:10925-11299:1
so has part: feature:10925-11299:1:exon
subclass of: SO_0000010

position:10925:1
position: 10925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11299:1
position: 11299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10925-11299:1:exon

SCLO_RS23535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
gene: tnpB
locus tag: SCLO_RS23535
old locus tag: SCLO_5000110
inference: COORDINATES: protein motif:HMM:NF017528.2
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MIGPGSDLRVLICTKPVDFRLGIDGLVALIQNQLGFDPYAGGIAYVFRAKRKDRCKILLWDQTGLVLVTKRLEDTGGFCWPQVHDGTYRLTAAEFSVLFSGADWRRVRSKRRPLAPKVDLANTA
SIO_010081: SCLO_RS23535
subclass of: SO_0000673
so part of: SCLO_RS23535
location: 10925..11299
location: region:10925-11299:1
so has part: feature:10925-11299:1:exon

WP_169925571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10925-11299:1:exon

SCLO_RS21980
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21980
old locus tag: SCLO_5000120
so part of: sequence
location: 11366..12976
location: region:11366-12976:1
so has part: feature:11366-12976:1:exon
subclass of: SO_0000010

position:11366:1
position: 11366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12976:1
position: 12976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11366-12976:1:exon

SCLO_RS21980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21980
old locus tag: SCLO_5000120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004209593.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MDAALALPTSLEASHALIIKMAQEAAERERCLAEAQAAKAALEDELAAAKDEIRRVTDILDAFKRHRFGSRSERLSPDQYSLVLEELETTLGRAEAGLEAVAEKIGKTAAKPRRKKNLGHLSPHLPRVEQLIDIEDKACPCCGGDLHVIDEDVAERLDVVPVQLRVLVTRRPLYGCRACDKEGSGPVVQAKAPPFIVKAGLPTNALVAHVVVSKFSDHTPLHRQERILQRQGIHIDRSTLADWVGHAAWHVERLHRHLMAELKSSVRLFADETRMPVQAPGTGKTTSGQLWTYARDDSPWGGTAPPAVVYIYERDRKGCRPVEHLSGYRGWLQVDGYAGYNQVGQGNAVTLALCLSHCRRRFYDLAEKEPVAAEVLRRFALIYRIEASLRGKSPEERLAGRQALMKDEVDKLFAYLTANRRRFSAKSKMGEAIAYGLNHQAGLTRFLEDGRLELDTNIVERAIKPQALTRRNALFCATHEGAAHWAVLASLLHTAHINNVDPLAWLTHALDTLARDGDSADLAALMPWHFPKIEGR
SIO_010081: SCLO_RS21980
subclass of: SO_0000673
so part of: SCLO_RS21980
location: 11366..12976
location: region:11366-12976:1
so has part: feature:11366-12976:1:exon

WP_096362273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11366-12976:1:exon

SCLO_RS21985
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21985
old locus tag: SCLO_5000130
pseudo: true
so part of: sequence
location: <13014..13853
location: region:13014-13853:1
so has part: feature:13014-13853:1:exon
subclass of: SO_0000010

position:13014:1
position: 13014
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:13853:1
position: 13853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13014-13853:1:exon

SCLO_RS21985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21985
old locus tag: SCLO_5000130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011053406.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS110 family transposase
SIO_010081: SCLO_RS21985
subclass of: SO_0000673
so part of: SCLO_RS21985
location: <13014..13853
location: region:13014-13853:1
so has part: feature:13014-13853:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13014-13853:1:exon

SCLO_RS23540
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS23540
so part of: sequence
location: 13982..14125
location: region:13982-14125:1
so has part: feature:13982-14125:1:exon
subclass of: SO_0000010

position:13982:1
position: 13982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14125:1
position: 14125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13982-14125:1:exon

SCLO_RS23540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS23540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQRLTLQACQPGGLGTRHALQRIGNRQQSEHGAVVVLARCSLTEFSW
SIO_010081: SCLO_RS23540
subclass of: SO_0000673
so part of: SCLO_RS23540
location: 13982..14125
location: region:13982-14125:1
so has part: feature:13982-14125:1:exon

WP_169925572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13982-14125:1:exon

SCLO_RS21990
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21990
pseudo: true
so part of: sequence
location: complement(14562..15969)
location: region:14562-15969:-1
so has part: feature:14562-15969:-1:exon
subclass of: SO_0000010

position:14562:-1
position: 14562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15969:-1
position: 15969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14562-15969:-1:exon

SCLO_RS21990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009489568.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS4 family transposase
SIO_010081: SCLO_RS21990
subclass of: SO_0000673
so part of: SCLO_RS21990
location: complement(14562..15969)
location: region:14562-15969:-1
so has part: feature:14562-15969:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14562-15969:-1:exon

SCLO_RS21995
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS21995
old locus tag: SCLO_5000160
so part of: sequence
location: complement(16298..17227)
location: region:16298-17227:-1
so has part: feature:16298-17227:-1:exon
subclass of: SO_0000010

position:16298:-1
position: 16298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17227:-1
position: 17227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16298-17227:-1:exon

SCLO_RS21995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS21995
old locus tag: SCLO_5000160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013848413.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: intradiol ring-cleavage dioxygenase
translation: MSETTRSERDLAYFDAARSADVVNARMGPDILPRMREVMTIIVTHLHAAVKEARLTTEEWMAGIEFLTKTGQMCSDWRQEFILLSDVLGVSMLVDALNHDRPEGSTENTVLGPFYVEDAPRYENGTNICLDGKGEPLVVRGRVTDNEGHPVVGATVDVWATNDDGFYDVQQKGIQPDYNLRGVFTTDARGEYWFRTAKPRFYPIPDDGTVGKLLAALGRHPNRAAHLHFIVKAPGYDTVVTHIFTPDCQYLAEDTVFGVKHSLIADFRKVDDAAEADKLGFNAPFWAVDRNFVLARNEDVGRNRRAAGR
SIO_010081: SCLO_RS21995
subclass of: SO_0000673
so part of: SCLO_RS21995
location: complement(16298..17227)
location: region:16298-17227:-1
so has part: feature:16298-17227:-1:exon

WP_096362274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16298-17227:-1:exon

SCLO_RS22000
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22000
old locus tag: SCLO_5000170
so part of: sequence
location: complement(17261..18325)
location: region:17261-18325:-1
so has part: feature:17261-18325:-1:exon
subclass of: SO_0000010

position:17261:-1
position: 17261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18325:-1
position: 18325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17261-18325:-1:exon

SCLO_RS22000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22000
old locus tag: SCLO_5000170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013848414.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: maleylacetate reductase
translation: MRDFVYNAHPARVIFGSGSLGQVGDEAQRLGMERVLVLSTPEQKRSAEQVAELLGKFCADVFPGATMHTPVAVTEEAMELVASKKVDGVVAVGGGSTVGLGKAIALRSDLPQIVIPTTYAGSEVTPIIGETKDGLKTTQTTPKVLPEVVIYDVDLTLGLPTGLSVTSGINAVAHAVEALYAKDGNPIIDMMAEEGVRAIVRSLPAIVQDPGNREARSDAQYGAWLCGTCLGSVGMSLHHKLCHTLGGTFNLPHAETHTVVLPHALQYNAPAAPRAIDALARVFEERDPARALYDLAGALGAPRALRDLGMPEAGIDQATDLALANAYWNPRPLAREAVRACIAAAWAGEPPQDR
SIO_010081: SCLO_RS22000
subclass of: SO_0000673
so part of: SCLO_RS22000
location: complement(17261..18325)
location: region:17261-18325:-1
so has part: feature:17261-18325:-1:exon

WP_096362275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17261-18325:-1:exon

SCLO_RS22005
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22005
old locus tag: SCLO_5000180
so part of: sequence
location: complement(18555..19148)
location: region:18555-19148:-1
so has part: feature:18555-19148:-1:exon
subclass of: SO_0000010

position:18555:-1
position: 18555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19148:-1
position: 19148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18555-19148:-1:exon

SCLO_RS22005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22005
old locus tag: SCLO_5000180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013039114.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTPDQKLSLQHDALNAAGCDRIFDDHASGAKADRPGLTEALAYLRSGDTLVVWKLDRLGRSMSHLIEKVGELATRGIGFRSLTENIDTTTSGGMLVFNIFGSLAQFERDLIRERTHAGLKAARERGRAGGRRPVVTPDKLRKARDHIASGLTVREAAARLKIGKTALYKALESMDRDTKPTRSRSVRP
SIO_010081: SCLO_RS22005
subclass of: SO_0000673
so part of: SCLO_RS22005
location: complement(18555..19148)
location: region:18555-19148:-1
so has part: feature:18555-19148:-1:exon

WP_066522055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18555-19148:-1:exon

SCLO_RS22010
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22010
old locus tag: SCLO_5000190
so part of: sequence
location: 19317..22244
location: region:19317-22244:1
so has part: feature:19317-22244:1:exon
subclass of: SO_0000010

position:19317:1
position: 19317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22244:1
position: 22244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19317-22244:1:exon

SCLO_RS22010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22010
old locus tag: SCLO_5000190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020817917.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MLAGHYDPSLDEREIARHFTLTRDDLELIASRRGDVTRLGYAMLMLYLRWPGRVLEAGEAPPMPILAFVAHQLDVSPASWRDYARRDETRRSHLADLSRRFGHLVFSRADFHALVAFAMPIAQTVTQSSRLAGIVIDEMRRRRLLLPPVTVIEAIVRRARQQAGDLVHDVLAGDLGEPERATLDALLSRRDDKSATWLSWLRNPPLSPAPRNILRLIERLDQVRALGLAASRAATIPQAAFDRIADEAARITPQHLAELPDLRRHAILVAAGIRLEESLTDAVLTMMDKLLGSMMRRAENRTKDKAIGTIRSLQAQLRLLTGSCRTLLDARARGVDSLAAISSIDWERLGTAVVDAELLIAPETIDRTAELIERQRSLRSVIGPFLNAFEFRGGGAVQGLLDAVRLIADIYRTGRRRLPDNPPLRFVPPSWRPFVLRDGVVVRAAYELCVLTQLRDRLRAGDIWVAASRHYRAFDSYLLPPATFDAMRARGPLPLAIDTDFDSFVAGRRASLDTAIERVTILARQGELPQVRLDDNGLVVSPLKAITPPDAENMRRVAYDRLPRVKITDLLLEVDSWTGFSECFTHRRSGRVADDRNALLTVILADGINLGLTRMAETCQGATLRQLAHLHDWHISEAAYSEALGRLIDVHRTVPLSALWGDGTTSSSDGQLFHAGGRGAAIGDINARNGNEPGVSFYTHVSDQYDPFSSRVIAATAGEAPYVLDGLLYHATGLSIEEHYTDTGGASDHVFGLMPFFGYRFAPRLRDLKDRRLHLLPGQEAGPLLAGMTGDPVAIGHVAAHWDELLRLTTSIRSGTATASAMLRRLSAYPRQNGLALALREVGRIERSIFMLDWLRDLDLRRRTQAGLNKGEARNALARALFFNQLGELRDRRFENQTYRASGLNLLVAAIILWNTRYLERAVGALAIPEDVARHIAPLGWEHISLTGDYRWNVESRPDPGQLRPLRTPSSLLAA
SIO_010081: SCLO_RS22010
subclass of: SO_0000673
so part of: SCLO_RS22010
location: 19317..22244
location: region:19317-22244:1
so has part: feature:19317-22244:1:exon

WP_174521995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19317-22244:1:exon

SCLO_RS22015
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22015
old locus tag: SCLO_5000200
so part of: sequence
location: 22648..23280
location: region:22648-23280:1
so has part: feature:22648-23280:1:exon
subclass of: SO_0000010

position:22648:1
position: 22648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23280:1
position: 23280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22648-23280:1:exon

SCLO_RS22015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22015
old locus tag: SCLO_5000200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011950391.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT-like domain-containing protein
translation: MEQDNRESWLNRVAIGMGPLFKALDAPLPSRVRVAIGFTSRGAKGKAIGECWDNRRSGDGHFEIFIRPDLAHAPDAMPAQIAAILAHELVHAAVGIAAGHGRAFKRIAIGLGLVGPMRATTPGDAFLSAIAPILAAVGPLPHARLDTGSATTRPRKQAARMLKCECATCGYTVRTARKWLETAGAPLCPVERHGPMRHDPISNGSEDELG
SIO_010081: SCLO_RS22015
subclass of: SO_0000673
so part of: SCLO_RS22015
location: 22648..23280
location: region:22648-23280:1
so has part: feature:22648-23280:1:exon

WP_066522052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22648-23280:1:exon

SCLO_RS22020
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22020
old locus tag: SCLO_5000210
so part of: sequence
location: 23353..24006
location: region:23353-24006:1
so has part: feature:23353-24006:1:exon
subclass of: SO_0000010

position:23353:1
position: 23353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24006:1
position: 24006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23353-24006:1:exon

SCLO_RS22020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22020
old locus tag: SCLO_5000210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165392.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MQVWAVIAQKGGQSKTTLTTGFAVEAAREGASVVILDADDRQGSALYWSERRDDDDVMVKDSSVAGLPLHVSRGRSSGKIDLIIIDTPANSKDIAMLAAEQADFVIIPVAPRGLDVHSVLQTVKQVQQAGTPFAVILTQVPHQGGEGQEAHAGFAAKGVTMFDSRLHFRKDFYKATPLGRTAAETDPDSKAAAELRAAYDEAKRLSGFTTKQVSEVG
SIO_010081: SCLO_RS22020
subclass of: SO_0000673
so part of: SCLO_RS22020
location: 23353..24006
location: region:23353-24006:1
so has part: feature:23353-24006:1:exon

WP_061939917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23353-24006:1:exon

SCLO_RS22025
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22025
old locus tag: SCLO_5000220
so part of: sequence
location: 24003..24329
location: region:24003-24329:1
so has part: feature:24003-24329:1:exon
subclass of: SO_0000010

position:24003:1
position: 24003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24329:1
position: 24329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24003-24329:1:exon

SCLO_RS22025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22025
old locus tag: SCLO_5000220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007406247.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMAKKTSALAGIFDDEPDAPAPVADTTPAPQPAAPRRSRRAADTPAPAAPARRSSHPGKKPVLIHIPEDMHRTLRQLSVEEGGEPLTVITERLLRQYLVQRGHTRFAP
SIO_010081: SCLO_RS22025
subclass of: SO_0000673
so part of: SCLO_RS22025
location: 24003..24329
location: region:24003-24329:1
so has part: feature:24003-24329:1:exon

WP_231923468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24003-24329:1:exon

SCLO_RS22030
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22030
old locus tag: SCLO_5000230
so part of: sequence
location: 24326..25279
location: region:24326-25279:1
so has part: feature:24326-25279:1:exon
subclass of: SO_0000010

position:24326:1
position: 24326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25279:1
position: 25279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24326-25279:1:exon

SCLO_RS22030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22030
old locus tag: SCLO_5000230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007406232.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MSKRRDPNPEFDLFIPALGDLPLKDQREVMERPFFSLQKRKRLKPIEYRSPDGDAWVRVQAIPDYGMATIWDADILIWAASTLNRMKQQGLNDLPRTLTTTPYDLLRAIKRSTGGRDYQELQAALLRLQTTSITTSIRATKRRQKAGFNWLDSWTFDTDAETEQPRGMTLTLSDWVYEGIVNEKSLLTMHPDYFLLSGGLERALYRIARKHAGTQRGGWTCRVEVLRDKTGSDAQPKEFNRMLRRVIEADQLPDYAMELTETTDKSPAVLFRLRGEAEALALAERMRAEEERRARFDAERKRAEEVDAHMDRLAGRR
SIO_010081: SCLO_RS22030
subclass of: SO_0000673
so part of: SCLO_RS22030
location: 24326..25279
location: region:24326-25279:1
so has part: feature:24326-25279:1:exon

WP_061939919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24326-25279:1:exon

SCLO_RS22035
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22035
old locus tag: SCLO_5000240
pseudo: true
so part of: sequence
location: complement(25851..>26722)
location: region:25851-26722:-1
so has part: feature:25851-26722:-1:exon
subclass of: SO_0000010

position:25851:-1
position: 25851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26722:-1
position: 26722
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25851-26722:-1:exon

SCLO_RS22035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22035
old locus tag: SCLO_5000240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213374.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: SCLO_RS22035
subclass of: SO_0000673
so part of: SCLO_RS22035
location: complement(25851..>26722)
location: region:25851-26722:-1
so has part: feature:25851-26722:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25851-26722:-1:exon

SCLO_RS22040
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22040
old locus tag: SCLO_5000250
pseudo: true
so part of: sequence
location: complement(26804..>27310)
location: region:26804-27310:-1
so has part: feature:26804-27310:-1:exon
subclass of: SO_0000010

position:26804:-1
position: 26804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27310:-1
position: 27310
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26804-27310:-1:exon

SCLO_RS22040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22040
old locus tag: SCLO_5000250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007683476.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: SCLO_RS22040
subclass of: SO_0000673
so part of: SCLO_RS22040
location: complement(26804..>27310)
location: region:26804-27310:-1
so has part: feature:26804-27310:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26804-27310:-1:exon

SCLO_RS22050
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22050
old locus tag: SCLO_5000260
so part of: sequence
location: complement(27374..28138)
location: region:27374-28138:-1
so has part: feature:27374-28138:-1:exon
subclass of: SO_0000010

position:27374:-1
position: 27374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28138:-1
position: 28138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27374-28138:-1:exon

SCLO_RS22050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22050
old locus tag: SCLO_5000260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: SCLO_RS22050
subclass of: SO_0000673
so part of: SCLO_RS22050
location: complement(27374..28138)
location: region:27374-28138:-1
so has part: feature:27374-28138:-1:exon

WP_001389365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27374-28138:-1:exon

SCLO_RS22055
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22055
old locus tag: SCLO_5000270
so part of: sequence
location: 28351..29517
location: region:28351-29517:1
so has part: feature:28351-29517:1:exon
subclass of: SO_0000010

position:28351:1
position: 28351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29517:1
position: 29517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28351-29517:1:exon

SCLO_RS22055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22055
old locus tag: SCLO_5000270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020820505.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERFHPLAADTDVPPEELALAQGECALALGRLDGLLASLTDIEKRLFCVGLLREVLLSSLAQAGFADAEHRFNAWFAGLDRGPQETPLTGCSAYAVVRALLGELSRHPWEPLADAAQTIALAARFGADRPMQAEDALAEEAIGRAITLMKQAGADDETPLPFAGLARLHALLRADPRFAPLERAVQIRSFGNRAVAIEQAATRTPLWAVDAALGRLLTASGAWARALPCPGAVTAQTLQPQLWPGERAMLAARSLQRSVTRLAELVAQARRRAVLMREQLGHLRSSARAPQVWILLAGFAPLGLDQITWAFGISRRGTYAIGDALVAARMARRETVKGKALLVVEEPGRDGQPASLDQATALPHAALAEFDAAMGEIDRLLAGSSGHP
SIO_010081: SCLO_RS22055
subclass of: SO_0000673
so part of: SCLO_RS22055
location: 28351..29517
location: region:28351-29517:1
so has part: feature:28351-29517:1:exon

WP_007686500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28351-29517:1:exon

SCLO_RS22060
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22060
old locus tag: SCLO_5000280
so part of: sequence
location: 29614..30012
location: region:29614-30012:1
so has part: feature:29614-30012:1:exon
subclass of: SO_0000010

position:29614:1
position: 29614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30012:1
position: 30012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29614-30012:1:exon

SCLO_RS22060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22060
old locus tag: SCLO_5000280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007686501.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2384 domain-containing protein
translation: MATTAHSGVPAKAPSRKDLSGPALRTFFRIADAWDLKEAEQMKLLGLDSRSTFQTWKRGAVAAIPKDALERISYVMGIYKGLKMLLPRTANEWVRKPNEAPLFAGRPAIERMASGNVADLYVVRQYIDAQRG
SIO_010081: SCLO_RS22060
subclass of: SO_0000673
so part of: SCLO_RS22060
location: 29614..30012
location: region:29614-30012:1
so has part: feature:29614-30012:1:exon

WP_007686501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29614-30012:1:exon

SCLO_RS22065
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22065
old locus tag: SCLO_5000290
so part of: sequence
location: 30012..30695
location: region:30012-30695:1
so has part: feature:30012-30695:1:exon
subclass of: SO_0000010

position:30695:1
position: 30695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30012-30695:1:exon

SCLO_RS22065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22065
old locus tag: SCLO_5000290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013041559.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RES family NAD+ phosphorylase
translation: MDAIATTQVRWQPCYRIVASRFPPISLFEDVADPADLEAVYAIEAMTNDRLRDEVGDLALVPPEDRVSGPGTSAIMAAFTHLNPDGSRFCDGSFGLFYAASTIETAVAETRHHRTRFMAYTHEPAQELDMRVYAVDLDAMLHDIRGLRDERPALYAPDSYAAGQALGRHLREQGSDGIVYQSVRDADGECAAVFRPRLLANSRQERHLCYVWDGRAIVTVYEKKTFA
SIO_010081: SCLO_RS22065
subclass of: SO_0000673
so part of: SCLO_RS22065
location: 30012..30695
location: region:30012-30695:1
so has part: feature:30012-30695:1:exon

WP_013041559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30012-30695:1:exon

SCLO_RS22070
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22070
old locus tag: SCLO_5000300
so part of: sequence
location: complement(30740..31090)
location: region:30740-31090:-1
so has part: feature:30740-31090:-1:exon
subclass of: SO_0000010

position:30740:-1
position: 30740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31090:-1
position: 31090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30740-31090:-1:exon

SCLO_RS22070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22070
old locus tag: SCLO_5000300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015449221.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAAFQDDIRENEIISPRRLAERLRFSMAHLARVARLDPKAMTLYPSAPTVQIKLEEIARVITRAAELAGEEGKAVIWFKHQPISGVGKTAAELVANGDIDIVMEDLDRMAAGVYS
SIO_010081: SCLO_RS22070
subclass of: SO_0000673
so part of: SCLO_RS22070
location: complement(30740..31090)
location: region:30740-31090:-1
so has part: feature:30740-31090:-1:exon

WP_007688086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30740-31090:-1:exon

SCLO_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22075
old locus tag: SCLO_5000310
so part of: sequence
location: complement(31155..32168)
location: region:31155-32168:-1
so has part: feature:31155-32168:-1:exon
subclass of: SO_0000010

position:31155:-1
position: 31155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32168:-1
position: 32168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31155-32168:-1:exon

SCLO_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22075
old locus tag: SCLO_5000310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183652.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MSKKNANFAADLVAGIDPGAQAPAARRPGIGASVLAGRESRLAELATGSVVSRTHELVDPARCRMWAGHNREYALLNEERCADLIESIKAQGKQEMPAIVRRVKDDPAFDFEVICGARRHWTISWLRAHNYPDFRFLVDIRSLTDEEAFRLADLENRARDDLTDLERARDYLRALDAYYEGRQKVMAERINVTESWLSRYLDLARLPAELMAAFALPQDLRIKHVTAIKPLLKPEDRRQRVFAEAGRLAQVQSDRAAPMPVPDIIRALALAADPPKRSGSPKKSGKPETIVSEGGKPLLKVEAVDRKGLKLTLLPHAGGTRAEAEAALKALLDQHWS
SIO_010081: SCLO_RS22075
subclass of: SO_0000673
so part of: SCLO_RS22075
location: complement(31155..32168)
location: region:31155-32168:-1
so has part: feature:31155-32168:-1:exon

WP_013849890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31155-32168:-1:exon

SCLO_RS22080
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22080
old locus tag: SCLO_5000320
so part of: sequence
location: complement(32216..33418)
location: region:32216-33418:-1
so has part: feature:32216-33418:-1:exon
subclass of: SO_0000010

position:32216:-1
position: 32216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33418:-1
position: 33418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32216-33418:-1:exon

SCLO_RS22080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22080
old locus tag: SCLO_5000320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007688084.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MAASLDIEGTQDLLSVSTLAQRTSSVLERLRDSARSARADERREPTFPIGKAAELVGRTAAAIREAEKDGRLPPPPRTENNRRVGYTLAQLNDMRGLFGTRPWRAATDPCCVIAVQNFKGGVGKSTLSVHLAQYLAIKGYRVALIDCDSQASATTLFGYVPDLDLTEEDTLYPFLRHDDMESLDYALRKTHFDGLELVPANLRLFQSEYEIAARMARGQGNLIDRMAQGIASIADRFDVVVLDPPPALGAISLSVLRAANALVVPVPPTVMDFSSTAAFLAMLDETIETLADRGLAPSLQFLRFVASKVDENKSMQKELLNLMRTLFGHAIVRTPLKDSAEIDNATARLMTVYELDGPVTSSTVRNRCLAYLDGVNSEIEVDIRSMWPSHLTRLRKEGLA
SIO_010081: SCLO_RS22080
subclass of: SO_0000673
so part of: SCLO_RS22080
location: complement(32216..33418)
location: region:32216-33418:-1
so has part: feature:32216-33418:-1:exon

WP_007688084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32216-33418:-1:exon

SCLO_RS22085
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22085
old locus tag: SCLO_5000330
so part of: sequence
location: complement(33614..34702)
location: region:33614-34702:-1
so has part: feature:33614-34702:-1:exon
subclass of: SO_0000010

position:33614:-1
position: 33614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34702:-1
position: 34702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33614-34702:-1:exon

SCLO_RS22085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22085
old locus tag: SCLO_5000330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017183650.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MRVAAALQAKGGDEFAKPGSIVEVKFVKGQSLSLTASRLLALMILTAGGDAWEDRPHKMRKADIRRGHKGNERISDMLEELHRTLFAVDDKSWRGKKATLRFSLISSSREEAEDEEGADAGWIEWEFTPEARKLIQESETYAVLNRQAVLGFRSTYALKLYEIGALRLHRRQSLWKGDMTALRALLGIAPDVYKDFAQLRRKVLEKAKAEIDQLAHFRVEWREIRQGRTVTEIEFRFEPKDAPAQIATVDEIGRHSAGRKARREDEVETVAVEAVTQAAVAALVSKDKAGAGEVTFPNGTIRFGSDTLAAIGRSAGGGWDIDLIADAYRAQMGERLAKLKGAKLIASWTGFCESFLARRGRP
SIO_010081: SCLO_RS22085
subclass of: SO_0000673
so part of: SCLO_RS22085
location: complement(33614..34702)
location: region:33614-34702:-1
so has part: feature:33614-34702:-1:exon

WP_007688083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33614-34702:-1:exon

SCLO_RS22090
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22090
so part of: sequence
location: complement(35089..35289)
location: region:35089-35289:-1
so has part: feature:35089-35289:-1:exon
subclass of: SO_0000010

position:35089:-1
position: 35089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35289:-1
position: 35289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35089-35289:-1:exon

SCLO_RS22090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDCIRRDADLFLKIKRIKTPLLAAEAFPIQKDSDSGGRKHSISAGLSKLILTGRGILPALPGALP
SIO_010081: SCLO_RS22090
subclass of: SO_0000673
so part of: SCLO_RS22090
location: complement(35089..35289)
location: region:35089-35289:-1
so has part: feature:35089-35289:-1:exon

WP_013041755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35089-35289:-1:exon

SCLO_RS22095
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22095
old locus tag: SCLO_5000340
so part of: sequence
location: 35369..35695
location: region:35369-35695:1
so has part: feature:35369-35695:1:exon
subclass of: SO_0000010

position:35369:1
position: 35369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35695:1
position: 35695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35369-35695:1:exon

SCLO_RS22095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22095
old locus tag: SCLO_5000340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009824075.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MINFAKFEIIGRIGEIDARPKVTLLSVCANYRRKGDDNEWQEDSHWNRVSVFSEGQRKHIADRAQVGDLVRIAGRLKDNSYERDGATHYTTDRIVEEFGILAPKGMPG
SIO_010081: SCLO_RS22095
subclass of: SO_0000673
so part of: SCLO_RS22095
location: 35369..35695
location: region:35369-35695:1
so has part: feature:35369-35695:1:exon

WP_007688082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35369-35695:1:exon

SCLO_RS22100
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22100
old locus tag: SCLO_5000350
so part of: sequence
location: 35757..36623
location: region:35757-36623:1
so has part: feature:35757-36623:1:exon
subclass of: SO_0000010

position:35757:1
position: 35757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36623:1
position: 36623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35757-36623:1:exon

SCLO_RS22100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22100
old locus tag: SCLO_5000350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007688081.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toprim domain-containing protein
translation: MPIAAPHRAKAIVEALGGIWRGTRGECRCPAHNDHGPSLSVRLGERAILFHCFAGCDTRDVLAALRRRKLHDAEPLTMPRPKAAADHRALALRLWKASQPIAGSPAADYLAARGLPPPYPRCLRYNPRTIVGAGERRRFFPAMIAAVENDLGVVAVQRTCLDLADILHKPMPKPKIALGLLGDAAIRLAPAGEELGLAEGIEDALSAMAWFGTPTWALGGVERLGLVAIPERVKRIIVYGDRGAAAAAMLKKARPHLTANGRELVLRLPERHADWNDAWRVRRAAEAA
SIO_010081: SCLO_RS22100
subclass of: SO_0000673
so part of: SCLO_RS22100
location: 35757..36623
location: region:35757-36623:1
so has part: feature:35757-36623:1:exon

WP_007688081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35757-36623:1:exon

SCLO_RS22105
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22105
old locus tag: SCLO_5000360
so part of: sequence
location: 36690..38882
location: region:36690-38882:1
so has part: feature:36690-38882:1:exon
subclass of: SO_0000010

position:36690:1
position: 36690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38882:1
position: 38882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36690-38882:1:exon

SCLO_RS22105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22105
old locus tag: SCLO_5000360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013041753.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: strawberry notch family protein
translation: MATHPLALTLPLDDPARTAAQGIADRLSEGCPVARNDLLAEMTSAFGGSSADGLWSLRDAYDVLELAQVLHLKNATLPADANARLAQLIAMTAALPTQSVRSETQIAFQQFSTPAPIGFLAAKAAAITAHDIVLEPSAGTGLLAVHAHLAGARLLLNDIDAWRTRLLRHAFPEGRLSTHDGELIDDMLDPQLVPSVVLLNPPFSRSQGRARDRHAALRHLRSALLRLAPGGRCAVILPDRIETEDADWLHATAGAHARLHLDLPPDAYAKHGTGQAVQLILLEKDGAGGSVPRQTCTTLGAALAAIDAMATPCAPQPQPISRPSGLFRGLTRRTRPVCSRAAVTLPTTRAVAYHRLDAPAPAGEPQGIYLPYRPSRLLIADAREHPSALVESQAMGSIAAPPVAYEPVLPARILDDGLLSDAQLETLIYAGAAFERDLPGRFISSEEGLSLSPAEAGNAYRTGFFLGDGTGAGKGRQVAGVILDQWLRGNRRHLWISKSETLVEDARRDWSALGGLPLDIQHLNQWKLGTPIALGDGILFLTYATLRSNRGDRGTRLRQLIEWMGEDFSGVIVFDEAHEMAGVAGGEGRFGATKGSEQGIAGVRLQNLAPRARILYASATGASDVNNLAYATRLGLWGPQTAFADRRAFVESLRRGGIAAMELIARDLKAQGLYAARALSFAVAHDDFPPFLAEGHRSVGRHIALARPVEVAQYLNGGNRFRAALSGPEL
SIO_010081: SCLO_RS22105
subclass of: SO_0000673
so part of: SCLO_RS22105
location: 36690..38882
location: region:36690-38882:1
so has part: feature:36690-38882:1:exon

WP_231923471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36690-38882:1:exon

SCLO_RS24090
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24090
so part of: sequence
location: complement(39481..39705)
location: region:39481-39705:-1
so has part: feature:39481-39705:-1:exon
subclass of: SO_0000010

position:39481:-1
position: 39481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39705:-1
position: 39705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39481-39705:-1:exon

SCLO_RS24090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24090
inference: COORDINATES: protein motif:HMM:NF025079.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4158 domain-containing protein
translation: MIEAAAKAAWATDKGMTIAMGVVTVLREARILLPSISTIERASSAGRARARKQAAYALIARSQHRTGPSPRSAF
SIO_010081: SCLO_RS24090
subclass of: SO_0000673
so part of: SCLO_RS24090
location: complement(39481..39705)
location: region:39481-39705:-1
so has part: feature:39481-39705:-1:exon

WP_231923472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39481-39705:-1:exon

SCLO_RS24095
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24095
old locus tag: SCLO_5000370
so part of: sequence
location: complement(39702..40091)
location: region:39702-40091:-1
so has part: feature:39702-40091:-1:exon
subclass of: SO_0000010

position:39702:-1
position: 39702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40091:-1
position: 40091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39702-40091:-1:exon

SCLO_RS24095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24095
old locus tag: SCLO_5000370
inference: COORDINATES: protein motif:HMM:NF025079.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4158 domain-containing protein
translation: MAKRKHQLLTESERDQILAIPTDRDRLARLYTFEPADIEIIGARRERRNQLGVALQLALLRHPGVTLAQLIQDRGAIPHDLAAFVAEQLGLHVADLANYAARVQTMTDHARELAVRLGLRGRPAPIFPS
SIO_010081: SCLO_RS24095
subclass of: SO_0000673
so part of: SCLO_RS24095
location: complement(39702..40091)
location: region:39702-40091:-1
so has part: feature:39702-40091:-1:exon

WP_231923473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39702-40091:-1:exon

SCLO_RS22115
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22115
old locus tag: SCLO_5000380
pseudo: true
so part of: sequence
location: 40230..>40788
location: region:40230-40788:1
so has part: feature:40230-40788:1:exon
subclass of: SO_0000010

position:40230:1
position: 40230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40788:1
position: 40788
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40230-40788:1:exon

SCLO_RS22115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22115
old locus tag: SCLO_5000380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017501669.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: SCLO_RS22115
subclass of: SO_0000673
so part of: SCLO_RS22115
location: 40230..>40788
location: region:40230-40788:1
so has part: feature:40230-40788:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40230-40788:1:exon

SCLO_RS24100
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24100
old locus tag: SCLO_5000390
so part of: sequence
location: 40793..41551
location: region:40793-41551:1
so has part: feature:40793-41551:1:exon
subclass of: SO_0000010

position:40793:1
position: 40793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41551:1
position: 41551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40793-41551:1:exon

SCLO_RS24100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24100
old locus tag: SCLO_5000390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRLKSAHDLSGLMKYMGRAPWDEMMDEMLFAHLGPACEATDLEPDDIFDVIGDHWQGQLWGCAFEDLLTQELEPEGLNLVDDYLKRRGWNEKAPNKAYMRALRDTVMSLYEVSEVIPGHSMTLRDLLRDIAPVTVREHSATQTLVNWDKIAARVVDVNGRHGISGALLPFSADGAGRVIEAFSQLENDGPGTGRLSPSERDGLLKASGPIFTNIWLLDSLGKAMPGSVPEMVNADGDDLVFHRIVFPWRRA
SIO_010081: SCLO_RS24100
subclass of: SO_0000673
so part of: SCLO_RS24100
location: 40793..41551
location: region:40793-41551:1
so has part: feature:40793-41551:1:exon

WP_231923480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40793-41551:1:exon

SCLO_RS24105
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24105
so part of: sequence
location: 41548..41820
location: region:41548-41820:1
so has part: feature:41548-41820:1:exon
subclass of: SO_0000010

position:41548:1
position: 41548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41820:1
position: 41820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41548-41820:1:exon

SCLO_RS24105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGKSVVRRLNAAQWLEPASDTFWNWLAPVTKNRKPRTTKGGQAFVTTMEDGTPVFANVELVGRKLIVEVNSAARASKRSRICANGSVIA
SIO_010081: SCLO_RS24105
subclass of: SO_0000673
so part of: SCLO_RS24105
location: 41548..41820
location: region:41548-41820:1
so has part: feature:41548-41820:1:exon

WP_231923474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41548-41820:1:exon

SCLO_RS24110
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24110
so part of: sequence
location: 41859..42056
location: region:41859-42056:1
so has part: feature:41859-42056:1:exon
subclass of: SO_0000010

position:41859:1
position: 41859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42056:1
position: 42056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41859-42056:1:exon

SCLO_RS24110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADDAARAPQEEPLDIPSDERERIVHEMLTREYTKTLDEAVPASATRHRGLWPVQRQAGRKLPTG
SIO_010081: SCLO_RS24110
subclass of: SO_0000673
so part of: SCLO_RS24110
location: 41859..42056
location: region:41859-42056:1
so has part: feature:41859-42056:1:exon

WP_231923475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41859-42056:1:exon

SCLO_RS22125
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22125
so part of: sequence
location: complement(42475..42756)
location: region:42475-42756:-1
so has part: feature:42475-42756:-1:exon
subclass of: SO_0000010

position:42475:-1
position: 42475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42756:-1
position: 42756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42475-42756:-1:exon

SCLO_RS22125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013635002.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MMHNPPHPGELLRDEVISALALSVTEAANRLAMSRVALSRVLNGKAAISPDLAVRLEQGASTARAWLAMQANYDLWCAMQHEQPPVRRLQDAA
SIO_010081: SCLO_RS22125
subclass of: SO_0000673
so part of: SCLO_RS22125
location: complement(42475..42756)
location: region:42475-42756:-1
so has part: feature:42475-42756:-1:exon

WP_096362279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42475-42756:-1:exon

SCLO_RS22130
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22130
so part of: sequence
location: complement(42767..43045)
location: region:42767-43045:-1
so has part: feature:42767-43045:-1:exon
subclass of: SO_0000010

position:42767:-1
position: 42767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43045:-1
position: 43045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42767-43045:-1:exon

SCLO_RS22130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006956727.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIIGFRHKGLEAFYHSGTTRGVQASHVKKLRNILGLLEVAAGPDDMNLPSFKLHPLKGDLRGHWSVWVNGNWRITFRFVGTDAELVDYQDYH
SIO_010081: SCLO_RS22130
subclass of: SO_0000673
so part of: SCLO_RS22130
location: complement(42767..43045)
location: region:42767-43045:-1
so has part: feature:42767-43045:-1:exon

WP_061939934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42767-43045:-1:exon

SCLO_RS22135
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22135
old locus tag: SCLO_5000400
pseudo: true
so part of: sequence
location: complement(43153..43633)
location: region:43153-43633:-1
so has part: feature:43153-43633:-1:exon
subclass of: SO_0000010

position:43153:-1
position: 43153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43633:-1
position: 43633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43153-43633:-1:exon

SCLO_RS22135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22135
old locus tag: SCLO_5000400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007568457.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: SCLO_RS22135
subclass of: SO_0000673
so part of: SCLO_RS22135
location: complement(43153..43633)
location: region:43153-43633:-1
so has part: feature:43153-43633:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43153-43633:-1:exon

SCLO_RS22145
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
gene: dnaE2
locus tag: SCLO_RS22145
pseudo: true
so part of: sequence
location: <44249..>44583
location: region:44249-44583:1
so has part: feature:44249-44583:1:exon
subclass of: SO_0000010

position:44249:1
position: 44249
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:44583:1
position: 44583
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44249-44583:1:exon

SCLO_RS22145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
gene: dnaE2
locus tag: SCLO_RS22145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010161711.1
note: DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: error-prone DNA polymerase
SIO_010081: SCLO_RS22145
subclass of: SO_0000673
so part of: SCLO_RS22145
location: <44249..>44583
location: region:44249-44583:1
so has part: feature:44249-44583:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44249-44583:1:exon

SCLO_RS24115
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24115
old locus tag: SCLO_5000420
so part of: sequence
location: complement(44833..45156)
location: region:44833-45156:-1
so has part: feature:44833-45156:-1:exon
subclass of: SO_0000010

position:44833:-1
position: 44833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45156:-1
position: 45156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44833-45156:-1:exon

SCLO_RS24115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24115
old locus tag: SCLO_5000420
inference: COORDINATES: protein motif:HMM:NF012792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MQSRPSSAIYPRDGTWYLGFMIVDAAQRGRGVGRSIYSTVESWAAARGATEIRLAVLEANEAAERFWRSLGFIEYRRVGPDTFKMRSHRRIELSRRLSGATVEGSNK
SIO_010081: SCLO_RS24115
subclass of: SO_0000673
so part of: SCLO_RS24115
location: complement(44833..45156)
location: region:44833-45156:-1
so has part: feature:44833-45156:-1:exon

WP_231923476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44833-45156:-1:exon

SCLO_RS24120
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24120
so part of: sequence
location: complement(45119..45364)
location: region:45119-45364:-1
so has part: feature:45119-45364:-1:exon
subclass of: SO_0000010

position:45119:-1
position: 45119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45364:-1
position: 45364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45119-45364:-1:exon

SCLO_RS24120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMMTGAPIKLTQADAADVADLYNRCSDYFLLQDGAAPTLDDARELFSDVPPEKSAHNQAVLGWKGPGGLYAIAAILRDLSA
SIO_010081: SCLO_RS24120
subclass of: SO_0000673
so part of: SCLO_RS24120
location: complement(45119..45364)
location: region:45119-45364:-1
so has part: feature:45119-45364:-1:exon

WP_231923477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45119-45364:-1:exon

SCLO_RS22155
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22155
old locus tag: SCLO_5000430
so part of: sequence
location: complement(45361..45981)
location: region:45361-45981:-1
so has part: feature:45361-45981:-1:exon
subclass of: SO_0000010

position:45361:-1
position: 45361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45981:-1
position: 45981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45361-45981:-1:exon

SCLO_RS22155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22155
old locus tag: SCLO_5000430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007686149.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYARVSKADGSQSLDLQHDALRAAGVEPGNIYDDRASGSRDDRPGLAACLKSLRDGDVLIVWKLDRLGRTLTHLVSTVQNLSDRGIGLRVLTGKGAQIDTTTPSGRMVFGIFATLAEFERDMIRERTMAGLAAARARGRKGGRKFALSKAQVRLAQAAMAQRDTSVSDLCKELGIERVTLYRYVGPNGELRDYGQRVLAAKTR
SIO_010081: SCLO_RS22155
subclass of: SO_0000673
so part of: SCLO_RS22155
location: complement(45361..45981)
location: region:45361-45981:-1
so has part: feature:45361-45981:-1:exon

WP_008832583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45361-45981:-1:exon

SCLO_RS24125
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24125
so part of: sequence
location: complement(46068..46268)
location: region:46068-46268:-1
so has part: feature:46068-46268:-1:exon
subclass of: SO_0000010

position:46068:-1
position: 46068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46268:-1
position: 46268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46068-46268:-1:exon

SCLO_RS24125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQREAKTIVGAPALADMPEILIAEGIVPQQLTLIDRQVKQRLALSIGQGHATRHTCSLFFPSYGLR
SIO_010081: SCLO_RS24125
subclass of: SO_0000673
so part of: SCLO_RS24125
location: complement(46068..46268)
location: region:46068-46268:-1
so has part: feature:46068-46268:-1:exon

WP_037523605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46068-46268:-1:exon

SCLO_RS24130
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24130
old locus tag: SCLO_5000440
pseudo: true
so part of: sequence
location: 46182..47575
location: region:46182-47575:1
so has part: feature:46182-47575:1:exon
subclass of: SO_0000010

position:46182:1
position: 46182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47575:1
position: 47575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46182-47575:1:exon

SCLO_RS24130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24130
old locus tag: SCLO_5000440
inference: COORDINATES: protein motif:HMM:NF025079.2
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF4158 domain-containing protein
SIO_010081: SCLO_RS24130
subclass of: SO_0000673
so part of: SCLO_RS24130
location: 46182..47575
location: region:46182-47575:1
so has part: feature:46182-47575:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46182-47575:1:exon

SCLO_RS24240
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24240
pseudo: true
so part of: sequence
location: 47832..>48427
location: region:47832-48427:1
so has part: feature:47832-48427:1:exon
subclass of: SO_0000010

position:47832:1
position: 47832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48427:1
position: 48427
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47832-48427:1:exon

SCLO_RS24240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24240
inference: COORDINATES: protein motif:HMM:NF013676.2
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: SCLO_RS24240
subclass of: SO_0000673
so part of: SCLO_RS24240
location: 47832..>48427
location: region:47832-48427:1
so has part: feature:47832-48427:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47832-48427:1:exon

SCLO_RS24245
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS24245
old locus tag: SCLO_5000450
pseudo: true
so part of: sequence
location: 48520..48992
location: region:48520-48992:1
so has part: feature:48520-48992:1:exon
subclass of: SO_0000010

position:48520:1
position: 48520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48992:1
position: 48992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48520-48992:1:exon

SCLO_RS24245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS24245
old locus tag: SCLO_5000450
inference: COORDINATES: protein motif:HMM:NF013676.2
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: SCLO_RS24245
subclass of: SO_0000673
so part of: SCLO_RS24245
location: 48520..48992
location: region:48520-48992:1
so has part: feature:48520-48992:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48520-48992:1:exon

SCLO_RS22165
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22165
old locus tag: SCLO_5000460
pseudo: true
so part of: sequence
location: 49156..49433
location: region:49156-49433:1
so has part: feature:49156-49433:1:exon
subclass of: SO_0000010

position:49156:1
position: 49156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49433:1
position: 49433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49156-49433:1:exon

SCLO_RS22165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22165
old locus tag: SCLO_5000460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011408759.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
SIO_010081: SCLO_RS22165
subclass of: SO_0000673
so part of: SCLO_RS22165
location: 49156..49433
location: region:49156-49433:1
so has part: feature:49156-49433:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49156-49433:1:exon

SCLO_RS22170
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22170
so part of: sequence
location: 49421..49714
location: region:49421-49714:1
so has part: feature:49421-49714:1:exon
subclass of: SO_0000010

position:49421:1
position: 49421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49714:1
position: 49714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49421-49714:1:exon

SCLO_RS22170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013651621.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPRLIWTPEALADVDRLHRWLKPKDADAASRAVAAIRAGVKILAQSPRVGRPAEDMDPEYREKLIDFGDSGYVVLYRLDGETVALLAVRHQKEAGYS
SIO_010081: SCLO_RS22170
subclass of: SO_0000673
so part of: SCLO_RS22170
location: 49421..49714
location: region:49421-49714:1
so has part: feature:49421-49714:1:exon

WP_066522399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49421-49714:1:exon

SCLO_RS22175
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22175
so part of: sequence
location: 49762..50028
location: region:49762-50028:1
so has part: feature:49762-50028:1:exon
subclass of: SO_0000010

position:49762:1
position: 49762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50028:1
position: 50028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49762-50028:1:exon

SCLO_RS22175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22175
inference: COORDINATES: protein motif:HMM:NF025120.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MAATAFVRARITARVKSWDVPQGQVAKRLGLTRLRLNDLLRGKFNGFSLDDLMTIATAAGVEPPAARKSSWDDLRGMGSVLAEGGMTP
SIO_010081: SCLO_RS22175
subclass of: SO_0000673
so part of: SCLO_RS22175
location: 49762..50028
location: region:49762-50028:1
so has part: feature:49762-50028:1:exon

WP_083949265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49762-50028:1:exon

SCLO_RS22180
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22180
old locus tag: SCLO_5000480
pseudo: true
so part of: sequence
location: complement(50025..>52468)
location: region:50025-52468:-1
so has part: feature:50025-52468:-1:exon
subclass of: SO_0000010

position:50025:-1
position: 50025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52468:-1
position: 52468
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50025-52468:-1:exon

SCLO_RS22180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22180
old locus tag: SCLO_5000480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: SCLO_RS22180
subclass of: SO_0000673
so part of: SCLO_RS22180
location: complement(50025..>52468)
location: region:50025-52468:-1
so has part: feature:50025-52468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50025-52468:-1:exon

SCLO_RS22185
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22185
old locus tag: SCLO_5000490
so part of: sequence
location: complement(52514..53278)
location: region:52514-53278:-1
so has part: feature:52514-53278:-1:exon
subclass of: SO_0000010

position:52514:-1
position: 52514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53278:-1
position: 53278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52514-53278:-1:exon

SCLO_RS22185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22185
old locus tag: SCLO_5000490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MDDFKGRHFTGEVILWAVRWYCRYGISYRDLEEMLADRGIDVDHTTIYRWVQRYAPEMEKRLRWFWRRGFDPSWRLDETYVRVRGKWTYLYRAVDKRGDTIDFFLSSTRSAKAAKRFLGKALRGLKDWEKPTKLNTDKAPSYGAAIAELKREGKLAEETEHRQVKYLNNVIEADHGKLKMLIKPVRGFKSMPTAYATIKGFEVMRALRKGQARAWCLQPGIRGEVRLIERSFGIGPSVMTEAMDVLNQHFANAA
SIO_010081: SCLO_RS22185
subclass of: SO_0000673
so part of: SCLO_RS22185
location: complement(52514..53278)
location: region:52514-53278:-1
so has part: feature:52514-53278:-1:exon

WP_066522521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52514-53278:-1:exon

SCLO_RS22190
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22190
old locus tag: SCLO_5000500
so part of: sequence
location: 53574..54566
location: region:53574-54566:1
so has part: feature:53574-54566:1:exon
subclass of: SO_0000010

position:53574:1
position: 53574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54566:1
position: 54566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53574-54566:1:exon

SCLO_RS22190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22190
old locus tag: SCLO_5000500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: serine/threonine protein phosphatase
translation: MRAIGNPVIEDLLPASPEQLLSIEMPAARAAWNIIADRLPFCVIPGNHDYDHLWTDHEFPAEIGGGIKGNKVEGIGGLQVSGLANWTNIFGASSPFFDGKAWYVSFHDEGCSSAQIFSAGGYRFLHLGLEMCPNEETLAWADGVINAYPGLPTIVSIHEFLNEEGERASIVYLDMTLRDSRRFGPARLWERFISRHDQILMTLNGHFHGVRHRIDLNQHGHKVYQFLVNYQGRKQSLKDTGSSARVIDGIGDGWLRLLRFDLAAAMPTLYLRAYSTHYKGFAPDLPRYAEWYGKEHPGMPAEEFLRLDDIAFDLEDFRQRFGPPGAAADP
SIO_010081: SCLO_RS22190
subclass of: SO_0000673
so part of: SCLO_RS22190
location: 53574..54566
location: region:53574-54566:1
so has part: feature:53574-54566:1:exon

WP_123905556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53574-54566:1:exon

SCLO_RS22195
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22195
old locus tag: SCLO_5000510
so part of: sequence
location: complement(54755..55519)
location: region:54755-55519:-1
so has part: feature:54755-55519:-1:exon
subclass of: SO_0000010

position:54755:-1
position: 54755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55519:-1
position: 55519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54755-55519:-1:exon

SCLO_RS22195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22195
old locus tag: SCLO_5000510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MDDFKGRHFTGEVILWAVRWYCRYGISYRDLEEMLADRGIDVDHTTIYRWVQRYAPEMEKRLRWFWRRGFDPSWRLDETYVRVRGKWTYLYRAVDKRGDTIDFFLSSTRSAKAAKRFLGKALRGLKDWEKPTKLNTDKAPSYGAAIAELKREGKLAEETEHRQVKYLNNVIEADHGKLKMLIKPVRGFKSMPTAYATIKGFEVMRALRKGQARAWCLQPGIRGEVRLIERSFGIGPSVMTEAMDVLNQHFANAA
SIO_010081: SCLO_RS22195
subclass of: SO_0000673
so part of: SCLO_RS22195
location: complement(54755..55519)
location: region:54755-55519:-1
so has part: feature:54755-55519:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54755-55519:-1:exon

SCLO_RS22200
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22200
old locus tag: SCLO_5000520
so part of: sequence
location: 55587..56147
location: region:55587-56147:1
so has part: feature:55587-56147:1:exon
subclass of: SO_0000010

position:55587:1
position: 55587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56147:1
position: 56147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55587-56147:1:exon

SCLO_RS22200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22200
old locus tag: SCLO_5000520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019054269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKLGYARVSTEDQNLEIQRGRLSEAGCEMMFEEKISGAARGRPELEKLMGHLRKDDVLVVARLDRLARSTIELLHIAERIKEKQAGLQSLDEPWADTTSPSGVMIMTVFAGIAQFERTLILSRTEEGRKAAMARGVSFGRPKKMRPDQAELARQLVLEGKSISAVARTFNVHPATIYRCIEPNSAL
SIO_010081: SCLO_RS22200
subclass of: SO_0000673
so part of: SCLO_RS22200
location: 55587..56147
location: region:55587-56147:1
so has part: feature:55587-56147:1:exon

WP_011950653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55587-56147:1:exon

SCLO_RS22205
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22205
old locus tag: SCLO_5000530
pseudo: true
so part of: sequence
location: <56184..>56885
location: region:56184-56885:1
so has part: feature:56184-56885:1:exon
subclass of: SO_0000010

position:56184:1
position: 56184
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:56885:1
position: 56885
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56184-56885:1:exon

SCLO_RS22205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22205
old locus tag: SCLO_5000530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012755369.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: SCLO_RS22205
subclass of: SO_0000673
so part of: SCLO_RS22205
location: <56184..>56885
location: region:56184-56885:1
so has part: feature:56184-56885:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56184-56885:1:exon

SCLO_RS22210
type: Gene
subclass of: SO_0000704
RO_0002162: 120107
locus tag: SCLO_RS22210
pseudo: true
so part of: sequence
location: complement(<56954..57097)
location: region:56954-57097:-1
so has part: feature:56954-57097:-1:exon
subclass of: SO_0000010

position:56954:-1
position: 56954
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:57097:-1
position: 57097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56954-57097:-1:exon

SCLO_RS22210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 120107
locus tag: SCLO_RS22210
inference: COORDINATES: protein motif:HMM:NF016144.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: GrpB family protein
SIO_010081: SCLO_RS22210
subclass of: SO_0000673
so part of: SCLO_RS22210
location: complement(<56954..57097)
location: region:56954-57097:-1
so has part: feature:56954-57097:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56954-57097:-1:exon