Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium cloacae JCM 10874T
Submitted (04-OCT-2016) Contact:Tomoyasu Nishizawa Ibaraki University College of Agriculture, Department of Bioresource sience; 3-21-1 Chuou, Ami, Ibaraki 300-0393, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP017656.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 0.2.1\nGenome Coverage :: 382x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 02:22:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,611\nCDSs (total) :: 4,552\nGenes (coding) :: 4,390\nCDSs (with protein) :: 4,390\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 162\nCDSs (without protein) :: 162\nPseudo Genes (ambiguous residues) :: 0 of 162\nPseudo Genes (frameshifted) :: 61 of 162\nPseudo Genes (incomplete) :: 120 of 162\nPseudo Genes (internal stop) :: 14 of 162\nPseudo Genes (multiple problems) :: 28 of 162\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011906626.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019054311.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: similar to AA sequence:RefSeq:WP_010339856.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212862.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824028.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212864.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004212865.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039112.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406847.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004212870.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183571.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039111.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004212877.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018251219.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020820506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212880.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183574.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212882.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212885.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212886.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368198.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004213255.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213251.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004213249.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004213247.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449233.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007686149.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686150.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013039108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683329.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406408.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406384.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039107.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683334.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406428.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212653.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212654.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007406426.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406382.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824016.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009824015.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406380.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406411.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449267.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016743863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406388.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449265.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212674.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212677.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_009823975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683345.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017501296.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213136.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004213137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213138.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449259.1
COORDINATES: similar to AA sequence:RefSeq:WP_016743854.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501299.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016743853.1
COORDINATES: protein motif:HMM:NF013694.2
COORDINATES: similar to AA sequence:RefSeq:WP_013039094.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020820519.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406406.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683361.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683363.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683367.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683370.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212741.1
GO:0042597 - periplasmic space [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611857.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016811.2
COORDINATES: similar to AA sequence:RefSeq:WP_007407174.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017503238.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017502557.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503240.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005100728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503242.1
COORDINATES: similar to AA sequence:RefSeq:WP_019922233.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
COORDINATES: similar to AA sequence:RefSeq:WP_010188495.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_016509647.1
COORDINATES: similar to AA sequence:RefSeq:WP_007682619.1
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_017183201.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004212962.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017980793.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486672.1
COORDINATES: protein motif:HMM:NF019886.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_017502281.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183605.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391264.1
MobA/MobL family protein; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019086524.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007407007.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017183478.1
COORDINATES: similar to AA sequence:RefSeq:WP_019830903.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007407020.1
COORDINATES: similar to AA sequence:RefSeq:WP_007407012.1
COORDINATES: similar to AA sequence:RefSeq:WP_007407000.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813195.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406999.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437044.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212957.1
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_007407009.1
COORDINATES: similar to AA sequence:RefSeq:WP_007407006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406998.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212951.1
COORDINATES: similar to AA sequence:RefSeq:WP_007407018.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212945.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501305.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405505.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212939.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738598.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406374.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212743.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212744.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406387.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501312.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017501313.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012562033.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017501316.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017501317.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501318.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405654.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501320.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405656.1
COORDINATES: protein motif:HMM:NF012645.2
COORDINATES: similar to AA sequence:RefSeq:WP_017501323.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017501324.1
COORDINATES: similar to AA sequence:RefSeq:WP_008261590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503370.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849922.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212750.1
COORDINATES: similar to AA sequence:RefSeq:WP_011800660.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039077.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010405516.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339794.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339793.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007406699.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406724.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007406702.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896601.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR03558.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017669446.1
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008829948.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406710.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406721.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076987.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008813514.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020303743.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406723.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406701.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406700.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406719.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007406725.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406703.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460523.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_011950625.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_007406605.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_007406582.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406578.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406613.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406604.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339780.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_019054286.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406603.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_007406606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406589.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_007406615.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_007406612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406595.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406581.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015600.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019527405.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406600.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406611.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004374506.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007679804.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406594.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_020818487.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010339469.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015930988.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406577.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832944.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491057.1
COORDINATES: similar to AA sequence:RefSeq:WP_012287629.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406580.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406609.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
YbaL family putative K(+) efflux transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011583194.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406280.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339459.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406251.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007406290.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406270.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832564.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339448.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02037.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406254.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406248.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016674.2
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406230.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339443.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406284.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406291.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339440.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406010.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406273.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831132.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406275.1
DnaJ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007406245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406296.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406278.1
COORDINATES: similar to AA sequence:RefSeq:WP_017977536.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_020820384.1
COORDINATES: similar to AA sequence:RefSeq:WP_015596990.1
COORDINATES: protein motif:HMM:NF025056.2
COORDINATES: similar to AA sequence:RefSeq:WP_018264113.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:TIGR01439.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012850369.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010409231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014074677.1
COORDINATES: similar to AA sequence:RefSeq:WP_008993488.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251282.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404100.1
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018251279.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: protein motif:HMM:NF012739.2
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: similar to AA sequence:RefSeq:WP_006611780.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF014430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012338661.1
COORDINATES: similar to AA sequence:RefSeq:WP_017979358.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007665754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018147835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012274988.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415894.1
COORDINATES: similar to AA sequence:RefSeq:WP_012274987.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834186.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834185.1
COORDINATES: similar to AA sequence:RefSeq:WP_012274978.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006834183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012274975.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834190.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006834191.1
COORDINATES: similar to AA sequence:RefSeq:WP_018147836.1
COORDINATES: protein motif:HMM:NF025008.2
COORDINATES: protein motif:HMM:NF015048.2
COORDINATES: similar to AA sequence:RefSeq:WP_018251275.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339517.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339516.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339515.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_005667001.1
COORDINATES: similar to AA sequence:RefSeq:WP_020307064.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823644.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012411052.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_018251263.1
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: similar to AA sequence:RefSeq:WP_013041396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011542358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011540697.1
COORDINATES: protein motif:HMM:NF027219.2
COORDINATES: similar to AA sequence:RefSeq:WP_010185723.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_004212667.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010404824.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011253226.1
bifunctional transaldolase/phosoglucose isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_019831499.1
GO:0004802 - transketolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022391.2
COORDINATES: similar to AA sequence:RefSeq:WP_010161711.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008603814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076972.1
COORDINATES: similar to AA sequence:RefSeq:WP_014077236.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459640.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459639.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012977160.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950545.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008828894.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006310245.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413799.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950488.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339740.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829880.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054787.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011950430.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008829877.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829876.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460600.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405783.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339732.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829869.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015549.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405790.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339725.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219942.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950504.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950502.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950505.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339722.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829640.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124614.1
COORDINATES: similar to AA sequence:RefSeq:WP_006953756.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503651.1
COORDINATES: similar to AA sequence:RefSeq:WP_013040147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405796.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409098.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011950517.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054356.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846908.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339712.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846910.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054428.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846912.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339708.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339707.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819415.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829636.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950521.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124620.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339702.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819409.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010124621.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405810.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339700.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054339.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339860.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406375.1