Mycoplasma wenyonii str. Massachusetts, complete sequence.
Bacteria; Mycoplasmatota; Mollicutes; Mycoplasmataceae; Mycoplasma.
Complete genome sequence of Mycoplasma wenyonii strain Massachusetts
Submitted (05-JUL-2012) Comparative Pathobiology, Purdue University, 725 Harrison Street, West Lafayette, IN 47907, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003703.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 02:23:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 749\nCDSs (total) :: 712\nGenes (coding) :: 711\nCDSs (with protein) :: 711\nGenes (RNA) :: 37\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 2\nPseudo Genes (total) :: 1\nCDSs (without protein) :: 1\nPseudo Genes (ambiguous residues) :: 0 of 1\nPseudo Genes (frameshifted) :: 0 of 1\nPseudo Genes (incomplete) :: 0 of 1\nPseudo Genes (internal stop) :: 1 of 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013608710.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015511385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858099.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013468.2
GO:0003725 - double-stranded RNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:TIGR01956.2
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_014582798.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF015113.2
His/Gly/Thr/Pro-type tRNA ligase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013608720.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858107.1
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014858108.1
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858110.1
GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]
signal recognition particle receptor subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015511398.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014582807.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511401.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013609554.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608730.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014850145.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858117.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858118.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF021106.2
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849812.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849813.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849786.1
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609561.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013608757.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511416.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849568.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849567.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF018155.2
COORDINATES: similar to AA sequence:RefSeq:WP_014849703.1
COORDINATES: similar to AA sequence:RefSeq:WP_014582838.1
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014849600.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850109.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511502.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858198.1
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit delta
COORDINATES: protein motif:HMM:TIGR00168.2
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511507.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014858571.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609120.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014858576.1
aspartyl/glutamyl-tRNA amidotransferase subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_015511641.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858484.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858483.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858482.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511645.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858479.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858478.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609132.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849574.1
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609136.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609137.1
COORDINATES: similar to AA sequence:RefSeq:WP_014582917.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609141.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858381.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511666.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858379.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511668.1
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609148.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609154.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609169.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511681.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858734.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609173.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013860.2
COORDINATES: protein motif:HMM:NF023433.2
HsdR family type I site-specific deoxyribonuclease
COORDINATES: protein motif:HMM:NF037510.2
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886563.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_014849690.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850090.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850080.1
COORDINATES: protein motif:HMM:TIGR01031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608972.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511543.1
COORDINATES: protein motif:HMM:NF036968.2
COORDINATES: similar to AA sequence:RefSeq:WP_013608992.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511538.1
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_015511535.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858226.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014858225.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511531.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_013609802.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858222.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0031554 - regulation of termination of DNA-templated transcription [Evidence IEA]
NusA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013609803.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511527.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609007.1
COORDINATES: protein motif:HMM:NF013205.2
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511524.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858216.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609011.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609809.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609013.1
COORDINATES: protein motif:HMM:NF013528.2
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: protein motif:HMM:NF013832.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609813.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511516.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609018.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858207.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858206.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013609021.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_014849754.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850029.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849710.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849994.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608759.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511418.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511419.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849781.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511421.1
COORDINATES: similar to AA sequence:RefSeq:WP_014273059.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_015511423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858136.1
COORDINATES: similar to AA sequence:RefSeq:WP_015727303.1
spermidine/putrescine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_013608771.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849694.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849700.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609431.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF025873.2
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019880.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014858892.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609426.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511871.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858887.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609418.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849900.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850017.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849793.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849743.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849899.1
COORDINATES: protein motif:HMM:NF012432.2
COORDINATES: similar to AA sequence:RefSeq:WP_014271992.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858785.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858783.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858782.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609352.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858780.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858779.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_014850087.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849689.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849794.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849810.1
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014858191.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_013608947.1
COORDINATES: similar to AA sequence:RefSeq:WP_014035217.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608948.1
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511500.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511501.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014850014.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858947.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013610166.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511883.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: similar to AA sequence:RefSeq:WP_014849902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849559.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849884.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849995.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849739.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849755.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283803.1
COORDINATES: protein motif:HMM:NF012372.2
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014273045.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858145.1
phenylalanyl-tRNA synthetase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013608775.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014858142.1
COORDINATES: protein motif:HMM:TIGR00329.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_014849760.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849874.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850146.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511568.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_014858302.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858303.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858304.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858305.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858306.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849829.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849834.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00011
COORDINATES: similar to AA sequence:RefSeq:WP_013609051.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858426.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609054.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609055.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858430.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335581.1
COORDINATES: similar to AA sequence:RefSeq:WP_014584225.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858667.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609849.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511585.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609064.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026223.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609066.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858660.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609852.1
COORDINATES: protein motif:HMM:NF012567.2
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013057.2
COORDINATES: similar to AA sequence:RefSeq:WP_015511595.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609073.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609855.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858616.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858615.1
COORDINATES: similar to AA sequence:RefSeq:WP_003696792.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609083.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609863.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609864.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014849817.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849816.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849878.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849877.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849929.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849927.1
COORDINATES: protein motif:HMM:NF013874.2
COORDINATES: similar to AA sequence:RefSeq:WP_013609865.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609089.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850015.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850016.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511610.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609868.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609093.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609094.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609871.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511618.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609100.1
COORDINATES: protein motif:HMM:NF013250.2
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014858555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004424135.1
COORDINATES: similar to AA sequence:RefSeq:WP_010720461.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511625.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609108.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609882.1
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014271973.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_013609111.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609885.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609114.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849890.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849889.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271979.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849961.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849948.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849956.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849951.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609369.1
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: similar to AA sequence:RefSeq:WP_013610086.1
COORDINATES: protein motif:HMM:TIGR00348.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014849986.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850147.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849981.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849544.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849790.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850114.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850008.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850002.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850003.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858162.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608943.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858159.1
COORDINATES: similar to AA sequence:RefSeq:WP_013608940.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511790.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858815.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850022.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850020.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014271986.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858150.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511441.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511443.1
COORDINATES: protein motif:HMM:NF014801.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014850098.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511789.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850044.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858300.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858299.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024255.2
GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (adenine(22)-N(1))-methyltransferase TrmK
COORDINATES: similar to AA sequence:RefSeq:WP_013609041.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609040.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858291.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609035.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_014858281.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511555.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511554.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609771.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]; GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858277.1
GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511551.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858243.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013608959.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_013608960.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014850081.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850086.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849644.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850076.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849975.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849642.1
COORDINATES: protein motif:HMM:NF016220.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014849578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849999.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850117.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850115.1
COORDINATES: similar to AA sequence:RefSeq:WP_013610168.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609458.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015511889.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511890.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858952.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014272130.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609463.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF013804.2
COORDINATES: protein motif:HMM:NF012975.2
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511897.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014583022.1
iron-sulfur cluster assembly scaffold protein
COORDINATES: similar to AA sequence:RefSeq:WP_015511902.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
cysteine peptidase family C39 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013610183.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511911.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858995.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849820.1
COORDINATES: similar to AA sequence:RefSeq:WP_014850151.1
COORDINATES: similar to AA sequence:RefSeq:WP_015726047.1
GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013609487.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858999.1
COORDINATES: protein motif:HMM:TIGR02397.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014859002.1
COORDINATES: similar to AA sequence:RefSeq:WP_013609492.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014859004.1
COORDINATES: similar to AA sequence:RefSeq:WP_014859005.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014859006.1
COORDINATES: similar to AA sequence:RefSeq:WP_014859011.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015511925.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012616.2
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_014859015.1
GO:0032977 - membrane insertase activity [Evidence IEA]
YidC/Oxa1 family membrane protein insertase
COORDINATES: similar to AA sequence:RefSeq:WP_014859016.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010321002.1