Siniperca chuatsi mitochondrion, complete genome.
type: Entry
definition: Siniperca chuatsi mitochondrion, complete genome.
sequence version: NC_015822.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_015822.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Siniperca chuatsi (mandarin fish)
organism: Siniperca chuatsi
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca.
reference: 1
references: 22409749
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JF972568.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16496
topology: circular
so has quality: SO_0000988
location: 1..16496
location: region:1-16496:1
RO_0002162: 119488

NC_015822
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Phylogenetic studies of three sinipercid fishes (Perciformes: Sinipercidae) based on complete mitochondrial DNA sequences
author: Chen, D.X.
author: Chu, W.Y.
author: Liu, X.L.
author: Nong, X.X.
author: Li, Y.L.
author: Du, S.J.
author: Zhang, J.S.
journal: Mitochondrial DNA
volume: 23
issue: 2
pages: 70-76
year: 2012
pubmed: 22409749

22409749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (13-JUL-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Chen, D.X.
author: Chu, W.Y.
author: Zhang, J.S.
journal: Submitted (17-MAY-2011) Bioengineering Environmental Sciences, Changsha University, 98 Hongshanqiao Rd, Changsha, Hunan 410003, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16496:1
position: 16496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16496:1:source
so part of: sequence
organism: Siniperca chuatsi
organelle: mitochondrion
mol type: genomic DNA
isolate: a-c-GT

119488
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Phe
anticodon: (pos:31..33,aa:Phe,seq:gaa)
codon recognized: UUC
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 119488
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1014
location: region:69-1014:1
so has part: feature:69-1014:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1014:1
position: 1014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1014:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Val
anticodon: (pos:1048..1050,aa:Val,seq:tac)
codon recognized: GUA
so part of: sequence
location: 1015..1086
location: region:1015-1086:1
so has part: feature:1015-1086:1:region

position:1015:1
position: 1015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1086:1
position: 1086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1015-1086:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 119488
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1087..2778
location: region:1087-2778:1
so has part: feature:1087-2778:1:region

position:1087:1
position: 1087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2778:1
position: 2778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1087-2778:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Leu
anticodon: (pos:2814..2816,aa:Leu,seq:taa)
codon recognized: UUA
so part of: sequence
location: 2779..2852
location: region:2779-2852:1
so has part: feature:2779-2852:1:region

position:2779:1
position: 2779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2852:1
position: 2852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2779-2852:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND1
so part of: sequence
location: 2853..3827
location: region:2853-3827:1
so has part: feature:2853-3827:1:exon
subclass of: SO_0000010

10965121
type: Gene
SIO_000068: ncbigene

position:2853:1
position: 2853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3827:1
position: 3827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2853-3827:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MISTLITHIINPLAFIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPILFLLTPMLALTLALTLWAPMPLPYPVIDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFNIAQESVWLILPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGAAHIPTIPELTAVNLMTKAALLSIVFLWVRASYPRFRYDQLMHLIWKNFLPLTLSLVIWHLSLPIAFAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2853..3827
location: region:2853-3827:1
so has part: feature:2853-3827:1:exon

YP_004733906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2853-3827:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Ile
anticodon: (pos:3863..3865,aa:Ile,seq:gat)
codon recognized: AUC
so part of: sequence
location: 3832..3902
location: region:3832-3902:1
so has part: feature:3832-3902:1:region

position:3832:1
position: 3832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3902:1
position: 3902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3832-3902:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Gln
anticodon: (pos:complement(3938..3940),aa:Gln,seq:ttg)
codon recognized: CAA
so part of: sequence
location: complement(3902..3972)
location: region:3902-3972:-1
so has part: feature:3902-3972:-1:region

position:3902:-1
position: 3902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3972:-1
position: 3972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3902-3972:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Met
anticodon: (pos:4003..4005,aa:Met,seq:cat)
codon recognized: AUG
so part of: sequence
location: 3973..4041
location: region:3973-4041:1
so has part: feature:3973-4041:1:region

position:3973:1
position: 3973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4041:1
position: 4041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3973-4041:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND2
so part of: sequence
location: 4042..5091
location: region:4042-5091:1
so has part: feature:4042-5091:1:exon
subclass of: SO_0000010

10965120
type: Gene
SIO_000068: ncbigene

position:4042:1
position: 4042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5091:1
position: 5091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4042-5091:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYILATLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMLLFASTTNAWLTGQWDIQQMSHPLPVTLITLALALKIGLAPVHAWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQPANSTILIILGLMSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILILQFSPSLTLLALLTYFIMTFSTFLVFKLNKSTTINALATSWAKAPMLTSLAPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALTALLSLYFYLRLTYAMTLTMSPNNLTGTTPWRLPSTQLNPTSSRLNYSHLILITPHPSSSCPINPL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4042..5091
location: region:4042-5091:1
so has part: feature:4042-5091:1:exon

YP_004733907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4042-5091:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Trp
anticodon: (pos:5121..5123,aa:Trp,seq:tca)
codon recognized: UGA
so part of: sequence
location: 5089..5159
location: region:5089-5159:1
so has part: feature:5089-5159:1:region

position:5089:1
position: 5089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5159:1
position: 5159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5089-5159:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Ala
anticodon: (pos:complement(5197..5199),aa:Ala,seq:tgc)
codon recognized: GCA
so part of: sequence
location: complement(5161..5229)
location: region:5161-5229:-1
so has part: feature:5161-5229:-1:region

position:5161:-1
position: 5161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5229:-1
position: 5229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5161-5229:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Asn
so part of: sequence
location: complement(5231..5303)
location: region:5231-5303:-1
so has part: feature:5231-5303:-1:region

position:5231:-1
position: 5231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5303:-1
position: 5303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5231-5303:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Cys
anticodon: (pos:complement(5377..5379),aa:Cys,seq:gca)
codon recognized: UGC
so part of: sequence
location: complement(5341..5407)
location: region:5341-5407:-1
so has part: feature:5341-5407:-1:region

position:5341:-1
position: 5341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5407:-1
position: 5407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5341-5407:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Tyr
anticodon: (pos:complement(5444..5446),aa:Tyr,seq:gta)
codon recognized: UAC
so part of: sequence
location: complement(5408..5477)
location: region:5408-5477:-1
so has part: feature:5408-5477:-1:region

position:5408:-1
position: 5408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5477:-1
position: 5477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5408-5477:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5479..7038
location: region:5479-7038:1
so has part: feature:5479-7038:1:exon
subclass of: SO_0000010

10965112
type: Gene
SIO_000068: ncbigene

position:5479:1
position: 5479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7038:1
position: 7038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5479-7038:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIMFLFIIWEAFAAKREVLAVELTTTNVEWLHGCPPPYHTFEEPAFVQVQSNWRE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5479..7038
location: region:5479-7038:1
so has part: feature:5479-7038:1:exon

YP_004733908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5479-7038:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Ser
anticodon: (pos:complement(7066..7068),aa:Ser,seq:tga)
codon recognized: UCA
so part of: sequence
location: complement(7030..7100)
location: region:7030-7100:-1
so has part: feature:7030-7100:-1:region

position:7030:-1
position: 7030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7100:-1
position: 7100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7030-7100:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Asp
anticodon: (pos:7137..7139,aa:Asp,seq:gtc)
codon recognized: GAC
so part of: sequence
location: 7104..7175
location: region:7104-7175:1
so has part: feature:7104-7175:1:region

position:7104:1
position: 7104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7175:1
position: 7175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7104-7175:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 7184..7874
location: region:7184-7874:1
so has part: feature:7184-7874:1:exon
subclass of: SO_0000010

10965113
type: Gene
SIO_000068: ncbigene

position:7184:1
position: 7184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7874:1
position: 7874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7184-7874:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
alternative label: COII
gene: COX2
gene synonym: COII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7874,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTVLPAVILILIALPSLRILYLMDEVNDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVIPVESPIRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7184..7874
location: region:7184-7874:1
so has part: feature:7184-7874:1:exon

YP_004733909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7184-7874:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Lys
anticodon: (pos:7909..7911,aa:Lys,seq:ttt)
codon recognized: AAA
so part of: sequence
location: 7875..7948
location: region:7875-7948:1
so has part: feature:7875-7948:1:region

position:7875:1
position: 7875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7948:1
position: 7948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7875-7948:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ATP8
so part of: sequence
location: 7950..8117
location: region:7950-8117:1
so has part: feature:7950-8117:1:exon
subclass of: SO_0000010

10965114
type: Gene
SIO_000068: ncbigene

position:7950:1
position: 7950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8117:1
position: 8117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7950-8117:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFTWLIFLTVIPPKVLAHTFPNEPTLQSAETPKTEPWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7950..8117
location: region:7950-8117:1
so has part: feature:7950-8117:1:exon

YP_004733910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7950-8117:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ATP6
so part of: sequence
location: 8108..8791
location: region:8108-8791:1
so has part: feature:8108-8791:1:exon
subclass of: SO_0000010

10965115
type: Gene
SIO_000068: ncbigene

position:8108:1
position: 8108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8791:1
position: 8791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8108-8791:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSFFDQFMSPTYLGIPLMALALSLPWILYPIPSSRWLNNRLLALQNWFINRFTQQLLLPLSPGGHKWAALFTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTIALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8108..8791
location: region:8108-8791:1
so has part: feature:8108-8791:1:exon

YP_004733911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8108-8791:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 8791..9575
location: region:8791-9575:1
so has part: feature:8791-9575:1:exon
subclass of: SO_0000010

10965116
type: Gene
SIO_000068: ncbigene

position:9575:1
position: 9575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8791-9575:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
alternative label: COIII
gene: COX3
gene synonym: COIII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9574..9575,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAIAALLMTSGLAIWFHFHSTTLMSLGMVLLLLTMFQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLALTILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8791..9575
location: region:8791-9575:1
so has part: feature:8791-9575:1:exon

YP_004733912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8791-9575:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Gly
anticodon: (pos:9609..9611,aa:Gly,seq:tcc)
codon recognized: GGA
so part of: sequence
location: 9576..9647
location: region:9576-9647:1
so has part: feature:9576-9647:1:region

position:9576:1
position: 9576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9647:1
position: 9647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9576-9647:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND3
so part of: sequence
location: 9648..9996
location: region:9648-9996:1
so has part: feature:9648-9996:1:exon
subclass of: SO_0000010

10965122
type: Gene
SIO_000068: ncbigene

position:9648:1
position: 9648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9996:1
position: 9996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9996:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9996,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVTTIISIAIVLSTILAIVSFWLPQMSPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLSSPLTTFLWASAVLALLTLGLIYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9648..9996
location: region:9648-9996:1
so has part: feature:9648-9996:1:exon

YP_004733913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9996:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Arg
anticodon: (pos:10027..10029,aa:Arg,seq:tcg)
codon recognized: CGA
so part of: sequence
location: 9997..10065
location: region:9997-10065:1
so has part: feature:9997-10065:1:region

position:9997:1
position: 9997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10065:1
position: 10065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9997-10065:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND4L
so part of: sequence
location: 10066..10362
location: region:10066-10362:1
so has part: feature:10066-10362:1:exon
subclass of: SO_0000010

10965117
type: Gene
SIO_000068: ncbigene

position:10066:1
position: 10066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10362:1
position: 10362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10066-10362:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFTFSSTFLLGLTGLALHRTHLLSALLCLEGMMLSLFIALSLWTLQLDSTNFSASPMLLLAFSACEASAGLALLVATARTHGSDRLQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10066..10362
location: region:10066-10362:1
so has part: feature:10066-10362:1:exon

YP_004733914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10066-10362:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND4
so part of: sequence
location: 10356..11736
location: region:10356-11736:1
so has part: feature:10356-11736:1:exon
subclass of: SO_0000010

10965119
type: Gene
SIO_000068: ncbigene

position:10356:1
position: 10356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11736:1
position: 11736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10356-11736:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11736,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLVPTIWFSPAKWLWPSSLLHSLVIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLILAFSATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTLSMLTLQYSDPMLLSTYADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAAVLLKLGGYGMMRMMVMLEPLTKELSYPFLIFALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMFLMTQRGPLPAHIIALDPSHSREHLLMALHLLPLILLILKPELIWGWAA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10356..11736
location: region:10356-11736:1
so has part: feature:10356-11736:1:exon

YP_004733915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10356-11736:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-His
anticodon: (pos:11767..11769,aa:His,seq:gtg)
codon recognized: CAC
so part of: sequence
location: 11737..11805
location: region:11737-11805:1
so has part: feature:11737-11805:1:region

position:11737:1
position: 11737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11805:1
position: 11805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11737-11805:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Ser
anticodon: (pos:11833..11835,aa:Ser,seq:gct)
codon recognized: AGY
so part of: sequence
location: 11806..11875
location: region:11806-11875:1
so has part: feature:11806-11875:1:region

position:11806:1
position: 11806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11875:1
position: 11875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11806-11875:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Leu
anticodon: (pos:11911..11913,aa:Leu,seq:tag)
codon recognized: CUN
so part of: sequence
location: 11878..11950
location: region:11878-11950:1
so has part: feature:11878-11950:1:region

position:11878:1
position: 11878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11950:1
position: 11950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11878-11950:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND5
so part of: sequence
location: 11951..13789
location: region:11951-13789:1
so has part: feature:11951-13789:1:exon
subclass of: SO_0000010

10965118
type: Gene
SIO_000068: ncbigene

position:11951:1
position: 11951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13789:1
position: 13789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11951-13789:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTSLMMTSSLIIIFLLLAYPVFTTLTPQPSGTNWALSQVKTAVKLAFFTSLLPLGLFLNEGAEVIITNWNWMNTLTFDVNISLKFDHYSIIFTPVALYVTWSILEFASWYMHADPYMNRFFKYLLVFLIAMITLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVLYNRVGDVGLIFAMAWMATNFNSWEMQQMFAAAKDFDLTFPLLGLIIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRLSPLMEHNQTALTVCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIESLNTSHLNAWALTLTILATSFTAIYSLRVVYFVSMGHPRFSPMSPINENNPAVINPIKRLAWGSIVAGLLITSNIIPLKTPVMTMPPLLKLAALVVTISGLLIALELASLTNKQFKPLPQLTTHHFSNMLGFFPMIIHRLTPKLNLTLGQTIASQMIDQTWLEKTGPKAIISSNIPLVTTTSNAQQGMIKTYLTLFLLTLILATLVFIF
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11951..13789
location: region:11951-13789:1
so has part: feature:11951-13789:1:exon

YP_004733916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11951-13789:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: ND6
so part of: sequence
location: complement(13786..14307)
location: region:13786-14307:-1
so has part: feature:13786-14307:-1:exon
subclass of: SO_0000010

10965110
type: Gene
SIO_000068: ncbigene

position:13786:-1
position: 13786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14307:-1
position: 14307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13786-14307:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYIMSLFLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGPFLSLILFLIYLGGMLVVFAYSAALAAEPYPESWGSRPVAAYMLVYGIGVALVSGLFWGGWYEVSWVPVDELGEFTVLRGDTGGVALMYSLGGGMLVVSAWVLLLTLFVVLELTRGLSRGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13786..14307)
location: region:13786-14307:-1
so has part: feature:13786-14307:-1:exon

YP_004733917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13786-14307:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Glu
anticodon: (pos:complement(14344..14346),aa:Glu,seq:ttc)
codon recognized: GAA
so part of: sequence
location: complement(14308..14376)
location: region:14308-14376:-1
so has part: feature:14308-14376:-1:region

position:14308:-1
position: 14308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14376:-1
position: 14376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14308-14376:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 119488
gene: CYTB
so part of: sequence
location: 14381..15521
location: region:14381-15521:1
so has part: feature:14381-15521:1:exon
subclass of: SO_0000010

10965111
type: Gene
SIO_000068: ncbigene

position:14381:1
position: 14381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15521:1
position: 15521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14381-15521:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 119488
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15521,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLVIQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNIHANGASFFFICIYMHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAATVIHLLFLHETGSNNPLGLNSDADKVSFHPYFSYKDLLGLAVLLMTLTSLALFSPNLLGGPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRSLTFRPITQFLFWALVADVAILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLTPLAGWLENKALGWS
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14381..15521
location: region:14381-15521:1
so has part: feature:14381-15521:1:exon

YP_004733918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14381-15521:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Thr
anticodon: (pos:15554..15556,aa:Thr,seq:tgt)
codon recognized: ACA
so part of: sequence
location: 15522..15593
location: region:15522-15593:1
so has part: feature:15522-15593:1:region

position:15522:1
position: 15522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15593:1
position: 15593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15522-15593:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 119488
product: tRNA-Pro
anticodon: (pos:complement(15629..15631),aa:Pro,seq:tgg)
codon recognized: CCA
so part of: sequence
location: complement(15593..15662)
location: region:15593-15662:-1
so has part: feature:15593-15662:-1:region

position:15593:-1
position: 15593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15662:-1
position: 15662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15593-15662:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 119488
so part of: sequence
location: 15663..16496
location: region:15663-16496:1
so has part: feature:15663-16496:1:region

position:15663:1
position: 15663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15663-16496:1:region